RLG00000021179

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001640
Physical Location & Seq
Reverse (-)
72674065 .. 72676964
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021179

Sequence Viewer

Length: 729 bp
ATGATTCATAGTTCTGGATGTCGTCGTCGATTGGTGGAGTGGTGGTTGTGGAGGAAGGCAATAGAGAATATGAGAATTTCACCAAGTTTACATCTCGGCATTGAGAAGCTGCATCTGTTCAATTCGGCTAAATGGGGTCGGGTATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGGTGATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACACTATTCTATATCCTGGATATGTACAACCTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAAGGTTGAAAGTGGCACATGTACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGGTATATACCTAGGAGTCATTTGATGGTCTACAATGCTGGAACTGATATTCTACATGGCGATCCTCTGGGCAGGTTGAAGTCATCCATGGAGGAGAAGAGGAAATTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

243

Amino Acids

27.72

Weight (kDa)

8.42

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 119 - 236 1.1e-10 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 2 cut(s) 403, 675
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 642
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 4 cut(s) 228, 507, 580, 590
AfiI CCNNNNNNNGG 2 cut(s) 301, 353
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 3 cut(s) 121, 566, 691
AjnI CCWGG 3 cut(s) 294, 496, 511
AluBI AGCT 4 cut(s) 109, 206, 324, 607
AluI AGCT 4 cut(s) 109, 206, 324, 607
AlwI GGATC 1 cut(s) 668
AoxI GGCC 2 cut(s) 344, 457
ApeKI GCWGC 4 cut(s) 109, 206, 262, 316
ApoI RAATTY 1 cut(s) 75
AseI ATTAAT 1 cut(s) 432
Asp718I GGTACC 1 cut(s) 226
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 72, 433
AvrII CCTAGG 1 cut(s) 623
BalI TGGCCA 1 cut(s) 459
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 96, 193, 274, 303
BccI CCATC 3 cut(s) 335, 355, 631
BciT130I CCWGG 3 cut(s) 296, 498, 513
BclI TGATCA 1 cut(s) 553
BfaI CTAG 1 cut(s) 624
BfuAI ACCTGC 2 cut(s) 403, 675
BglII AGATCT 1 cut(s) 217
BisI GCNGC 4 cut(s) 110, 207, 263, 317
BlnI CCTAGG 1 cut(s) 623
BlsI GCNGC 4 cut(s) 111, 208, 264, 318
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 296, 498, 513
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 296, 498, 513
BmsI GCATC 2 cut(s) 121, 430
BpuEI CTTGAG 2 cut(s) 613, 631
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 159, 623, 699
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 353
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 3 cut(s) 296, 498, 513
BseDI CCNNGG 3 cut(s) 159, 623, 699
BseGI GGATG 4 cut(s) 23, 169, 346, 695
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 301, 353
BseMII CTCAG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 719
BseXI GCAGC 4 cut(s) 96, 193, 274, 303
BsgI GTGCAG 2 cut(s) 281, 431
BshFI GGCC 2 cut(s) 346, 459
BshNI GGYRCC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 301, 353
BsnI GGCC 2 cut(s) 346, 459
Bsp1407I TGTACA 2 cut(s) 505, 578
Bsp143I GATC 3 cut(s) 217, 553, 673
Bsp19I CCATGG 2 cut(s) 159, 699
BspACI CCGC 1 cut(s) 418
BspANI GGCC 2 cut(s) 346, 459
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 2 cut(s) 403, 675
BspPI GGATC 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 226
BsrGI TGTACA 2 cut(s) 505, 578
BssECI CCNNGG 3 cut(s) 159, 623, 699
BssMI GATC 3 cut(s) 217, 553, 673
BssT1I CCWWGG 3 cut(s) 159, 623, 699
Bst2UI CCWGG 3 cut(s) 296, 498, 513
Bst6I CTCTTC 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 325
BstAUI TGTACA 2 cut(s) 505, 578
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 2 cut(s) 159, 699
BstF5I GGATG 4 cut(s) 23, 169, 346, 695
BstKTI GATC 3 cut(s) 220, 556, 676
BstMBI GATC 3 cut(s) 217, 553, 673
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 3 cut(s) 296, 498, 513
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 3 cut(s) 294, 496, 511
BstV1I GCAGC 4 cut(s) 96, 193, 274, 303
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 2 cut(s) 346, 459
BtgI CCRYGG 2 cut(s) 159, 699
BtsCI GGATG 4 cut(s) 23, 169, 346, 695
BveI ACCTGC 2 cut(s) 403, 675
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 4 cut(s) 227, 506, 579, 589
CviAII CATG 5 cut(s) 160, 461, 576, 668, 700
CviJI RGCY 9 cut(s) 109, 128, 196, 206, 316, 324, 346, 459, 607
CviKI_1 RGCY 9 cut(s) 109, 128, 196, 206, 316, 324, 346, 459, 607
CviQI GTAC 4 cut(s) 227, 506, 579, 589
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 219, 555, 675
DpnII GATC 3 cut(s) 217, 553, 673
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
Eco130I CCWWGG 3 cut(s) 159, 623, 699
EcoRII CCWGG 3 cut(s) 294, 496, 511
EcoT14I CCWWGG 3 cut(s) 159, 623, 699
ErhI CCWWGG 3 cut(s) 159, 623, 699
FaeI CATG 5 cut(s) 163, 464, 579, 671, 703
FatI CATG 5 cut(s) 159, 460, 575, 667, 699
FauI CCCGC 1 cut(s) 411
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 110, 207, 263, 317
FokI GGATG 4 cut(s) 30, 176, 353, 682
Fsp4HI GCNGC 4 cut(s) 110, 207, 263, 317
FspBI CTAG 1 cut(s) 624
GluI GCNGC 4 cut(s) 110, 207, 263, 317
HaeIII GGCC 2 cut(s) 346, 459
Hin1II CATG 5 cut(s) 163, 464, 579, 671, 703
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 5 cut(s) 4, 150, 369, 546, 628
HphI GGTGA 2 cut(s) 72, 433
Hpy166II GTNNAC 3 cut(s) 89, 175, 643
Hpy188I TCNGA 1 cut(s) 558
Hpy188III TCNNGA 3 cut(s) 15, 437, 610
Hpy8I GTNNAC 3 cut(s) 89, 175, 643
Hpy99I CGWCG 2 cut(s) 27, 30
HpyAV CCTTC 2 cut(s) 49, 553
HpyCH4V TGCA 9 cut(s) 112, 186, 209, 262, 319, 328, 399, 412, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 5 cut(s) 163, 464, 579, 671, 703
KpnI GGTACC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 217, 553, 673
Lsp1109I GCAGC 4 cut(s) 96, 193, 274, 303
LweI GCATC 2 cut(s) 121, 430
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 1 cut(s) 624
MalI GATC 3 cut(s) 219, 555, 675
MboI GATC 3 cut(s) 217, 553, 673
MboII GAAGA 2 cut(s) 227, 721
MflI RGATCY 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 5 cut(s) 75, 121, 181, 250, 716
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 1 cut(s) 637
MnlI CCTC 9 cut(s) 45, 240, 291, 331, 356, 606, 687, 697, 705
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
MseI TTAA 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 459
MspR9I CCNGG 3 cut(s) 296, 498, 513
MvaI CCWGG 3 cut(s) 296, 498, 513
MwoI GCNNNNNNNGC 1 cut(s) 325
NcoI CCATGG 2 cut(s) 159, 699
NdeII GATC 3 cut(s) 217, 553, 673
NlaIII CATG 5 cut(s) 163, 464, 579, 671, 703
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 75
NspI RCATGY 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 575
PfeI GAWTC 4 cut(s) 4, 150, 369, 546
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 4 cut(s) 111, 208, 264, 318
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
PscI ACATGT 1 cut(s) 575
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 3 cut(s) 294, 496, 511
PspGI CCWGG 3 cut(s) 294, 496, 511
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 4 cut(s) 228, 507, 580, 590
RsaNI GTAC 4 cut(s) 227, 506, 579, 589
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 110, 207, 263, 317
Sau3AI GATC 3 cut(s) 217, 553, 673
Sau96I GGNCC 1 cut(s) 344
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 1 cut(s) 637
ScrFI CCNGG 3 cut(s) 296, 498, 513
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 2 cut(s) 121, 430
SmlI CTYRAG 2 cut(s) 592, 610
SmoI CTYRAG 2 cut(s) 592, 610
Sse9I AATT 5 cut(s) 75, 121, 181, 250, 716
SsiI CCGC 1 cut(s) 418
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 294, 496, 511
StyI CCWWGG 3 cut(s) 159, 623, 699
TaqI TCGA 1 cut(s) 28
TasI AATT 5 cut(s) 75, 121, 181, 250, 716
TatI WGTACW 3 cut(s) 505, 578, 588
TfiI GAWTC 4 cut(s) 4, 150, 369, 546
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseI GCWGC 4 cut(s) 109, 206, 262, 316
TspDTI ATGAA 4 cut(s) 477, 538, 549, 617
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 579
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 1 cut(s) 624
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.