FvH4_2g32010

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001640
Physical Location & Seq
Forward (+)
24381700 .. 24385533
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32010.t3

Sequence Viewer

Length: 1176 bp
ATGTGGACCGAATCGACTCGGAACCGAGTCATAGTCATAGTCCTCACCTTCGCCGCCACCGTCAAACTCTCTCACTCTCTCTACCGCTACAAGCTCCGCCGCTCCAAAGCTCGCTCCGGAACGATGTCGCTCGCTCCTCCGTCGGAAACCGACGCCGAATCTCTCAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACTTCGACGTCCCGAGCTCCAAGGTTCCGTTGATTTACTCTTCGAGTTATGATATCGCATTTCTCGGCATCGAGAAGCTGCACCCGTTCGATTCTGCTAAATGGGGCCGGATATGTAGATTCCTATCCATGGATGATGTTGTGGAGAAGAATTGCCTTGTGGAGCCAAAGCAAGCTTCAAAGGAAGATCTTCTTGTGGTGCATACTGAAGCATACTTGAAGAGTTTGAAGAGTAGTTTAGATGTTGCTATGATAATTGAGGTACCTCCTGTTGCCCTATTCCCAAACTGCCTTGTACAGCAGAAAGTTCTCGGGCCATTTCGCAACCAGGTGGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGAGGGTTTCATCATTGTTGTGGGGCAAAAGGAGGTGGATTCTGTGCTTATGCCGATATTTCTCTTTGCATACATTTTGCCTTTGTGTGGTTAAACATATCAAGGGTCATGATTATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACGGATTTTGCAAATGACAGTCGAGTCTATATCCTGGATATGTACAACCCTGGAATATATCCATTTGATTATGAGGCAAGGAGATACATTGATCAGAGGGTTGAAGTACCGAGTGGCACTACAACAGCCGAGTACTTGAGGAAGTTAGATGAAGCTCTTGAGGTTGCTGCTCATAATTTTGAACCTGAGTTGGTAGTATACAATGCTGGAACTGATATTCTCGATGGAGATCCTCTGGGCAGGTTGAAGATCAGTCCTGATGGGATAACTCACAGGGATGAGAAAGTCTTCAAGTTTGCTCGGGAGAGAAATATTCCCATTGTCATGCTCACATCAGGTGGTTACATGAAGTCAAGTGCAAGAGTTATAGCAGACTCGATAACCAACCTCTCAAATAAATCCTTGATTGATACGGGGAGAAACAGAACTTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

392

Amino Acids

43.62

Weight (kDa)

8.54

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 93 - 329 4.9e-47 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 761
AatII GACGTC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 969
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 936
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 4 cut(s) 54, 85, 97, 100
AclWI GGATC 1 cut(s) 962
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 2 cut(s) 153, 204
AfaI GTAC 5 cut(s) 459, 492, 782, 846, 872
AfiI CCNNNNNNNGG 4 cut(s) 325, 529, 675, 739
AgsI TTSAA 7 cut(s) 375, 415, 424, 842, 920, 985, 1030
AjnI CCWGG 3 cut(s) 522, 771, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 8 cut(s) 94, 110, 193, 213, 274, 371, 553, 893
AluI AGCT 8 cut(s) 94, 110, 193, 213, 274, 371, 553, 893
Alw21I GWGCWC 1 cut(s) 215
AlwI GGATC 1 cut(s) 962
Ama87I CYCGRG 3 cut(s) 208, 506, 1038
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 4 cut(s) 301, 509, 573, 730
ApeKI GCWGC 4 cut(s) 171, 274, 545, 905
Asp700I GAANNNNTTC 2 cut(s) 384, 1025
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 6, 301, 509, 573
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 3 cut(s) 208, 506, 1038
AvaII GGWCC 1 cut(s) 6
BalI TGGCCA 1 cut(s) 732
BanI GGYRCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 1018
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 183, 261, 532, 892
BccI CCATC 4 cut(s) 564, 584, 956, 992
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 3 cut(s) 524, 773, 789
BclI TGATCA 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 969
BglII AGATCT 1 cut(s) 382
BisI GCNGC 6 cut(s) 54, 100, 172, 275, 546, 906
BlsI GCNGC 6 cut(s) 55, 101, 173, 276, 547, 907
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 3 cut(s) 524, 773, 789
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 3 cut(s) 208, 506, 1038
BmgT120I GGNCC 4 cut(s) 6, 301, 509, 573
BmiI GGNNCC 5 cut(s) 23, 222, 302, 360, 459
BmrFI CCNGG 3 cut(s) 524, 773, 789
BmsI GCATC 2 cut(s) 273, 703
BpiI GAAGAC 1 cut(s) 1018
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 895, 917
BsaBI GATNNNNATC 3 cut(s) 319, 717, 966
BsaHI GRCGYC 2 cut(s) 153, 204
BsaJI CCNNGG 3 cut(s) 216, 324, 787
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 529, 675, 739
Bse8I GATNNNNATC 3 cut(s) 319, 717, 966
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 3 cut(s) 524, 773, 789
BseDI CCNNGG 3 cut(s) 216, 324, 787
BseGI GGATG 3 cut(s) 334, 575, 1021
BseJI GATNNNNATC 3 cut(s) 319, 717, 966
BseLI CCNNNNNNNGG 4 cut(s) 325, 529, 675, 739
BseMII CTCAG 2 cut(s) 178, 915
BseRI GAGGAG 2 cut(s) 126, 603
BseXI GCAGC 4 cut(s) 183, 261, 532, 892
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 4 cut(s) 303, 511, 575, 732
BshNI GGYRCC 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 3 cut(s) 208, 506, 1038
BsiSI CCGG 2 cut(s) 117, 304
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 4 cut(s) 325, 529, 675, 739
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 4 cut(s) 303, 511, 575, 732
BsoBI CYCGRG 3 cut(s) 208, 506, 1038
Bsp1286I GDGCHC 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 116
Bsp1407I TGTACA 2 cut(s) 490, 780
Bsp143I GATC 5 cut(s) 382, 706, 829, 967, 987
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 4 cut(s) 54, 85, 97, 100
BspANI GGCC 4 cut(s) 303, 511, 575, 732
BspCNI CTCAG 2 cut(s) 177, 916
BspEI TCCGGA 1 cut(s) 116
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 5 cut(s) 23, 222, 302, 360, 459
BspMI ACCTGC 1 cut(s) 969
BspPI GGATC 1 cut(s) 962
BspT107I GGYRCC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 102
BsrGI TGTACA 2 cut(s) 490, 780
BssECI CCNNGG 3 cut(s) 216, 324, 787
BssMI GATC 5 cut(s) 382, 706, 829, 967, 987
BssNAI GTATAC 1 cut(s) 937
BssNI GRCGYC 2 cut(s) 153, 204
BssT1I CCWWGG 2 cut(s) 216, 324
Bst1107I GTATAC 1 cut(s) 937
Bst2UI CCWGG 3 cut(s) 524, 773, 789
Bst4CI ACNGT 2 cut(s) 61, 758
Bst6I CTCTTC 3 cut(s) 241, 410, 419
BstACI GRCGYC 2 cut(s) 153, 204
BstAPI GCANNNNNTGC 1 cut(s) 554
BstAUI TGTACA 2 cut(s) 490, 780
BstC8I GCNNGC 5 cut(s) 112, 132, 191, 369, 555
BstDEI CTNAG 2 cut(s) 164, 924
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 334, 575, 1021
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 5 cut(s) 385, 709, 832, 970, 990
BstMBI GATC 5 cut(s) 382, 706, 829, 967, 987
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 3 cut(s) 524, 773, 789
BstSCI CCNGG 3 cut(s) 522, 771, 787
BstV1I GCAGC 4 cut(s) 183, 261, 532, 892
BstV2I GAAGAC 1 cut(s) 1018
BstX2I RGATCY 2 cut(s) 382, 967
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 382, 967
BstZ17I GTATAC 1 cut(s) 937
BsuRI GGCC 4 cut(s) 303, 511, 575, 732
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 3 cut(s) 334, 575, 1021
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 5 cut(s) 112, 132, 191, 369, 555
CciI TCATGA 1 cut(s) 696
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 4 cut(s) 6, 301, 509, 573
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 522
Csp6I GTAC 5 cut(s) 458, 491, 781, 845, 871
CviAII CATG 6 cut(s) 325, 697, 734, 1063, 1084, 1173
CviQI GTAC 5 cut(s) 458, 491, 781, 845, 871
DdeI CTNAG 2 cut(s) 164, 924
DpnI GATC 5 cut(s) 384, 708, 831, 969, 989
DpnII GATC 5 cut(s) 382, 706, 829, 967, 987
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 3 cut(s) 241, 410, 419
EarI CTCTTC 3 cut(s) 241, 410, 419
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 216, 324
Eco24I GRGCYC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 3 cut(s) 208, 506, 1038
EcoICRI GAGCTC 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 522, 771, 787
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 216, 324
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 2 cut(s) 216, 324
FaeI CATG 6 cut(s) 328, 700, 737, 1066, 1087, 1176
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 372, 404
FaqI GGGAC 1 cut(s) 191
FatI CATG 6 cut(s) 324, 696, 733, 1062, 1083, 1172
FbaI TGATCA 1 cut(s) 829
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 6 cut(s) 54, 100, 172, 275, 546, 906
FokI GGATG 3 cut(s) 341, 582, 1028
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 6 cut(s) 54, 100, 172, 275, 546, 906
GlaI GCGC 1 cut(s) 170
GluI GCNGC 6 cut(s) 54, 100, 172, 275, 546, 906
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 4 cut(s) 303, 511, 575, 732
HapII CCGG 2 cut(s) 117, 304
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 2 cut(s) 153, 204
Hin1II CATG 6 cut(s) 328, 700, 737, 1066, 1087, 1176
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 369, 551
HinfI GANTC 9 cut(s) 11, 16, 27, 158, 287, 315, 627, 762, 1112
HpaII CCGG 2 cut(s) 117, 304
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 6, 937
Hpy188I TCNGA 3 cut(s) 21, 145, 834
Hpy188III TCNNGA 9 cut(s) 117, 208, 268, 697, 710, 896, 959, 995, 1040
Hpy8I GTNNAC 2 cut(s) 6, 937
Hpy99I CGWCG 3 cut(s) 145, 155, 206
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 61, 758
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 8 cut(s) 277, 397, 548, 557, 657, 716, 749, 1097
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 164, 924
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 153, 204
Hsp92II CATG 6 cut(s) 328, 700, 737, 1066, 1087, 1176
HspAI GCGC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 116
KpnI GGTACC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 5 cut(s) 382, 706, 829, 967, 987
LmnI GCTCC 6 cut(s) 99, 107, 119, 139, 218, 358
Lsp1109I GCAGC 4 cut(s) 183, 261, 532, 892
LweI GCATC 2 cut(s) 273, 703
MabI ACCWGGT 1 cut(s) 522
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 1079
MalI GATC 5 cut(s) 384, 708, 831, 969, 989
MbiI CCGCTC 1 cut(s) 102
MboI GATC 5 cut(s) 382, 706, 829, 967, 987
MboII GAAGA 8 cut(s) 228, 355, 377, 392, 427, 436, 997, 1018
MflI RGATCY 2 cut(s) 382, 967
MhlI GDGCHC 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 3 cut(s) 346, 450, 913
MluNI TGGCCA 1 cut(s) 732
MlyI GAGTC 4 cut(s) 10, 36, 771, 1106
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 732
MroI TCCGGA 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 384, 1025
MscI TGGCCA 1 cut(s) 732
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 4 cut(s) 581, 606, 1014, 1061
Msp20I TGGCCA 1 cut(s) 732
MspI CCGG 2 cut(s) 117, 304
MspR9I CCNGG 3 cut(s) 524, 773, 789
MvaI CCWGG 3 cut(s) 524, 773, 789
MwoI GCNNNNNNNGC 1 cut(s) 554
NcoI CCATGG 1 cut(s) 324
NdeII GATC 5 cut(s) 382, 706, 829, 967, 987
NlaIII CATG 6 cut(s) 328, 700, 737, 1066, 1087, 1176
NlaIV GGNNCC 5 cut(s) 23, 222, 302, 360, 459
NmeAIII GCCGAG 2 cut(s) 240, 892
PagI TCATGA 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 384, 1025
PfeI GAWTC 5 cut(s) 11, 158, 287, 315, 627
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 6 cut(s) 55, 101, 173, 276, 547, 907
PleI GAGTC 4 cut(s) 10, 35, 770, 1106
PpsI GAGTC 4 cut(s) 10, 35, 770, 1106
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 3 cut(s) 522, 771, 787
PspGI CCWGG 3 cut(s) 522, 771, 787
PspN4I GGNNCC 5 cut(s) 23, 222, 302, 360, 459
PspPI GGNCC 4 cut(s) 6, 301, 509, 573
PsuI RGATCY 2 cut(s) 382, 967
RsaI GTAC 5 cut(s) 459, 492, 782, 846, 872
RsaNI GTAC 5 cut(s) 458, 491, 781, 845, 871
RseI CAYNNNNRTG 4 cut(s) 581, 606, 1014, 1061
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 6 cut(s) 54, 100, 172, 275, 546, 906
Sau3AI GATC 5 cut(s) 382, 706, 829, 967, 987
Sau96I GGNCC 4 cut(s) 6, 301, 509, 573
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 4 cut(s) 10, 36, 771, 1106
ScrFI CCNGG 3 cut(s) 524, 773, 789
SduI GDGCHC 1 cut(s) 215
SexAI ACCWGGT 1 cut(s) 522
SfaNI GCATC 2 cut(s) 273, 703
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 4 cut(s) 581, 606, 1014, 1061
SmlI CTYRAG 2 cut(s) 874, 896
SmoI CTYRAG 2 cut(s) 874, 896
Sse9I AATT 3 cut(s) 346, 450, 913
SsiI CCGC 4 cut(s) 54, 85, 97, 100
SspI AATATT 1 cut(s) 1051
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 522, 771, 787
StyI CCWWGG 2 cut(s) 216, 324
TaaI ACNGT 2 cut(s) 61, 758
TaiI ACGT 1 cut(s) 207
TaqI TCGA 8 cut(s) 14, 201, 239, 267, 285, 760, 960, 1115
TaqII GACCGA 1 cut(s) 23
TasI AATT 3 cut(s) 346, 450, 913
TatI WGTACW 3 cut(s) 490, 780, 870
TauI GCSGC 2 cut(s) 56, 102
TfiI GAWTC 5 cut(s) 11, 158, 287, 315, 627
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TseI GCWGC 4 cut(s) 171, 274, 545, 905
TspDTI ATGAA 4 cut(s) 587, 750, 903, 1100
TspGWI ACGGA 3 cut(s) 129, 213, 755
VpaK11BI GGWCC 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 936
XmnI GAANNNNTTC 2 cut(s) 384, 1025
ZraI GACGTC 1 cut(s) 205
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.