Rw2G034110

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001640
Physical Location & Seq
Forward (+)
55933598 .. 55934744
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034110.1

Sequence Viewer

Length: 537 bp
ATGTCGTTTGCTGCTCTACCTGAAAACGACACCAAATCTCTCAGGCGCAGCTGTATTCTCTCCAGCAAGCTCTACTTTGATGTCCCGAGCTCCAAAGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTTGGAATCTGAGAATTTCGCCAAGTTTACATCTTGGCATTGAGAAGCTGCATCCGTTCGATTTGGCTAAATGGGGTCGGATATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTATAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTACCTCCTGTTGCCCTGTTTCTAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGAGAGGATGGGCCATCAATATGGGAGGACTGGGTTTATCATTGTTGTGGGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGGTGATGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

6.93

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AcsI RAATTY 2 cut(s) 113, 153
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 6 cut(s) 51, 70, 90, 187, 284, 402
AluI AGCT 6 cut(s) 51, 70, 90, 187, 284, 402
Alw21I GWGCWC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 6 cut(s) 11, 48, 187, 284, 340, 394
ApoI RAATTY 2 cut(s) 113, 153
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 536
AvaI CYCGRG 1 cut(s) 85
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 5 cut(s) 60, 174, 271, 352, 381
BccI CCATC 3 cut(s) 394, 413, 433
BciT130I CCWGG 1 cut(s) 374
BglII AGATCT 1 cut(s) 295
BisI GCNGC 6 cut(s) 12, 49, 188, 285, 341, 395
BlsI GCNGC 6 cut(s) 13, 50, 189, 286, 342, 396
Bme1390I CCNGG 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 306, 384
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 451
BpmI CTGGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 104, 446
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 190, 247, 424
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 3 cut(s) 55, 140, 367
BseNI ACTGG 2 cut(s) 104, 446
BseXI GCAGC 5 cut(s) 60, 174, 271, 352, 381
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 1 cut(s) 424
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 237
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 3 cut(s) 54, 141, 366
BspLI GGNNCC 2 cut(s) 306, 384
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 2 cut(s) 104, 446
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 68, 404
BstDEI CTNAG 3 cut(s) 41, 149, 353
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 190, 247, 424
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstV1I GCAGC 5 cut(s) 60, 174, 271, 352, 381
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 190, 247, 424
Cac8I GCNNGC 2 cut(s) 68, 404
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 422
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 238
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 41, 149, 353
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 241
FaiI YATR 6 cut(s) 223, 239, 269, 433, 489, 509
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 12, 49, 188, 285, 341, 395
FokI GGATG 3 cut(s) 177, 254, 431
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 12, 49, 188, 285, 341, 395
GlaI GCGC 1 cut(s) 47
GluI GCNGC 6 cut(s) 12, 49, 188, 285, 341, 395
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 424
HhaI GCGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 3 cut(s) 145, 228, 477
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 3 cut(s) 135, 167, 253
Hpy188I TCNGA 2 cut(s) 150, 219
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 3 cut(s) 135, 167, 253
HpyCH4V TGCA 8 cut(s) 190, 264, 287, 340, 397, 406, 507, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 3 cut(s) 41, 149, 353
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 46
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 5 cut(s) 60, 174, 271, 352, 381
LweI GCATC 1 cut(s) 199
MabI ACCWGGT 1 cut(s) 372
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 113, 153, 259, 328
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 5 cut(s) 318, 369, 409, 430, 464
MseI TTAA 1 cut(s) 535
MslI CAYNNNNRTG 2 cut(s) 430, 456
MspA1I CMGCKG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 403
NcoI CCATGG 1 cut(s) 237
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 306, 384
PfeI GAWTC 3 cut(s) 145, 228, 477
PkrI GCNGC 6 cut(s) 13, 50, 189, 286, 342, 396
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 306, 384
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 51
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 2 cut(s) 430, 456
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 6 cut(s) 12, 49, 188, 285, 341, 395
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 372
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 430, 456
Sse9I AATT 4 cut(s) 113, 153, 259, 328
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 198
TasI AATT 4 cut(s) 113, 153, 259, 328
TfiI GAWTC 3 cut(s) 145, 228, 477
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TseI GCWGC 6 cut(s) 11, 48, 187, 284, 340, 394
TspGWI ACGGA 1 cut(s) 183
XapI RAATTY 2 cut(s) 113, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.