Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Forward (+)

44576514 .. 44579755

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCGTTTGCTGCTCCACCTGAAAACGACGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACTTTGACATCCCGAGCTTCAACGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTCGGAATATGAGAATTTCGCCAAGTTTACATCTCGGCATTGAGAAGCTGCATCCGTTCGATTCGGCTAAATGGGGTCGGGTATGTATTTTCTTGTCCATGGATGATGTTATGGACAATAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGCAATTCGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGATTTTATCATTGTTGTAGGGGAAAAGGAGGATTATGAAGCAAGGAGATTCATTGATCAGAGGATTGAAGTAGCAGTGAGCCGTGGCACTACAACAATCGAGTACTTGAGAAAGATGAAGCTCTTGAGGTATATACTTAGAAGTCATGTGCTGCCGTGTTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

205

Amino Acids

23.24

Weight (kDa)

9.46

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AcsI	RAATTY	2 cut(s)	113, 153
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	306, 554
AgsI	TTSAA	3 cut(s)	94, 130, 518
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	6 cut(s)	70, 90, 187, 284, 409, 571
AluI	AGCT	6 cut(s)	70, 90, 187, 284, 409, 571
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	7 cut(s)	11, 48, 187, 284, 340, 401, 601
ApoI	RAATTY	2 cut(s)	113, 153
Asp718I	GGTACC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	304
BbvI	GCAGC	6 cut(s)	60, 174, 271, 352, 388, 588
BccI	CCATC	2 cut(s)	420, 440
BceAI	ACGGC	3 cut(s)	36, 516, 589
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	505
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	7 cut(s)	12, 49, 188, 285, 341, 402, 602
BlsI	GCNGC	7 cut(s)	13, 50, 189, 286, 342, 403, 603
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	577, 595
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	237, 532
Bse1I	ACTGG	2 cut(s)	104, 453
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	237, 532
BseGI	GGATG	4 cut(s)	81, 190, 247, 431
BseMII	CTCAG	2 cut(s)	55, 367
BseNI	ACTGG	2 cut(s)	104, 453
BseXI	GCAGC	6 cut(s)	60, 174, 271, 352, 388, 588
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	295, 505
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	54, 366
BspLI	GGNNCC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	104, 453
BssECI	CCNNGG	2 cut(s)	237, 532
BssMI	GATC	2 cut(s)	295, 505
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	68, 411
BstDEI	CTNAG	3 cut(s)	41, 353, 587
BstDSI	CCRYGG	2 cut(s)	237, 532
BstF5I	GGATG	4 cut(s)	81, 190, 247, 431
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	298, 508
BstMBI	GATC	2 cut(s)	295, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstV1I	GCAGC	6 cut(s)	60, 174, 271, 352, 388, 588
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	2 cut(s)	237, 532
BtsCI	GGATG	4 cut(s)	81, 190, 247, 431
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	68, 411
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	429
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	305, 553
CviAII	CATG	2 cut(s)	238, 596
CviQI	GTAC	2 cut(s)	305, 553
DdeI	CTNAG	3 cut(s)	41, 353, 587
DpnI	GATC	2 cut(s)	297, 507
DpnII	GATC	2 cut(s)	295, 505
Eco130I	CCWWGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	241, 599
FaiI	YATR	8 cut(s)	149, 223, 239, 251, 486, 582, 584, 597
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	237, 595
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	7 cut(s)	12, 49, 188, 285, 341, 402, 602
FokI	GGATG	4 cut(s)	68, 177, 254, 438
Fsp4HI	GCNGC	7 cut(s)	12, 49, 188, 285, 341, 402, 602
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	7 cut(s)	12, 49, 188, 285, 341, 402, 602
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	431
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	241, 599
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	200, 498
Hpy166II	GTNNAC	2 cut(s)	135, 167
Hpy188I	TCNGA	3 cut(s)	144, 510, 617
Hpy188III	TCNNGA	2 cut(s)	85, 574
Hpy8I	GTNNAC	2 cut(s)	135, 167
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	190, 264, 287, 340, 404, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	41, 353, 587
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	241, 599
HspAI	GCGC	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	295, 505
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	9 cut(s)	28, 33, 76, 117, 324, 332, 359, 386, 434
Lsp1109I	GCAGC	6 cut(s)	60, 174, 271, 352, 388, 588
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	297, 507
MboI	GATC	2 cut(s)	295, 505
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	5 cut(s)	113, 153, 259, 328, 378
MnlI	CCTC	7 cut(s)	318, 369, 416, 437, 472, 504, 570
MslI	CAYNNNNRTG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	295, 505
NlaIII	CATG	2 cut(s)	241, 599
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	200, 498
PkrI	GCNGC	7 cut(s)	13, 50, 189, 286, 342, 403, 603
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	306, 554
RsaNI	GTAC	2 cut(s)	305, 553
RseI	CAYNNNNRTG	1 cut(s)	437
SatI	GCNGC	7 cut(s)	12, 49, 188, 285, 341, 402, 602
Sau3AI	GATC	2 cut(s)	295, 505
Sau96I	GGNCC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	556, 574
SmoI	CTYRAG	2 cut(s)	556, 574
Sse9I	AATT	5 cut(s)	113, 153, 259, 328, 378
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	198, 549
TasI	AATT	5 cut(s)	113, 153, 259, 328, 378
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	200, 498
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	7 cut(s)	11, 48, 187, 284, 340, 401, 601
TspDTI	ATGAA	3 cut(s)	490, 501, 581
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	531
XapI	RAATTY	2 cut(s)	113, 153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.