RchiOBHm_Chr6g0269961

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001640
Physical Location & Seq
Reverse (-)
27584064 .. 27585587
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24217

Sequence Viewer

Length: 384 bp
ATGATAATTGAGGTACCTCCTGTTACCCTGTTTCCAAATTACTTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGCAATTCGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGGTTTTATCATTATTGTAGGGGAAAAGGAGGATTATGAAGCAAGGAGATTCATTAATCAGAGGGTTGAAGTAGCAGTGAGCCGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGACGTATATACTTAGAAGTCATGTGCTGCCAACTTCCATGTGGACTGAAGAACCTGATATGAATGTTGGGTTGCCGCTCATAATTTTGCCCCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

9.39

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 361
AciI CCGC 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 2 cut(s) 15, 263
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 118, 280
AluI AGCT 2 cut(s) 118, 280
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 3 cut(s) 49, 110, 310
AseI ATTAAT 1 cut(s) 213
Asp718I GGTACC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 61, 97, 297
BccI CCATC 2 cut(s) 129, 149
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 83
BisI GCNGC 4 cut(s) 50, 111, 311, 359
BlsI GCNGC 4 cut(s) 51, 112, 312, 360
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 76, 368
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 61, 97, 297
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 13
BsnI GGCC 1 cut(s) 140
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 75, 369
BspLI GGNNCC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 361
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 62, 296, 377
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 61, 97, 297
BstXI CCANNNNNNTGG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 14, 262
CviAII CATG 2 cut(s) 305, 322
CviJI RGCY 5 cut(s) 110, 118, 140, 240, 280
CviKI_1 RGCY 5 cut(s) 110, 118, 140, 240, 280
CviQI GTAC 2 cut(s) 14, 262
DdeI CTNAG 3 cut(s) 62, 296, 377
Eco57I CTGAAG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 308, 325
FaiI YATR 7 cut(s) 195, 291, 293, 306, 323, 344, 365
FatI CATG 2 cut(s) 304, 321
Fnu4HI GCNGC 4 cut(s) 50, 111, 311, 359
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 4 cut(s) 50, 111, 311, 359
GluI GCNGC 4 cut(s) 50, 111, 311, 359
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 2 cut(s) 308, 325
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 49, 113, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 3 cut(s) 62, 296, 377
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 308, 325
KpnI GGTACC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 33, 41, 68, 95, 143, 351
Lsp1109I GCAGC 3 cut(s) 61, 97, 297
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 22
MbiI CCGCTC 1 cut(s) 361
MboII GAAGA 1 cut(s) 344
MluCI AATT 4 cut(s) 6, 37, 87, 366
MnlI CCTC 7 cut(s) 4, 27, 78, 125, 146, 181, 213
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 308, 325
NlaIV GGNNCC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 4 cut(s) 51, 112, 312, 360
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 138
RsaI GTAC 2 cut(s) 15, 263
RsaNI GTAC 2 cut(s) 14, 262
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 50, 111, 311, 359
Sau96I GGNCC 1 cut(s) 138
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 83
SetI ASST 6 cut(s) 15, 19, 120, 282, 290, 340
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 4 cut(s) 6, 37, 87, 366
SsiI CCGC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 290
TasI AATT 4 cut(s) 6, 37, 87, 366
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 240
TseI GCWGC 3 cut(s) 49, 110, 310
TspDTI ATGAA 4 cut(s) 199, 210, 290, 359
TspRI CASTG 1 cut(s) 240
VspI ATTAAT 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 321
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.