RLG00000010461

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001640
Physical Location & Seq
Forward (+)
1784484 .. 1787270
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010461

Sequence Viewer

Length: 1173 bp
ATGTGGACCGGTTCGACTCGGAACCGAGTCATAGTCATAGTCCTCACCTTCGCCGCCACCGTCAAACTCTCTCACTCTCTCTACCGCAAACTCCGCCGTTCAGGAACTCGCTCCCGAACGATGTCGTTTGCTGCTCCACCGGAAAACGACACCGAATCTCTCAGACGCAGCCGTATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGAGCTCCAAGGTGCCGTTGATTTACTCTTCGACGTATGATATCGCATTTCTCGGCATTGAGAAGCTGCACCCGTTCGATTCGGCTAAATGGGGTCGGATATGTAGATTCCTGTCCATGGATGATGTTGTGGACAAAAATTGCATTGTAGAGCCAAAGGAAGCTACAAAGGAAGATCTTCTTGTGGTGCATACAGAAGCATACTTGAATAGTCTAAAGAAAAGTGCAGATGTTGCTATGATAATTGAGGTACCTCCTGTTGCCCTATTTCCGAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCATTTCGCAACCAGGTGGGGGGAACTATCTTAGCTGCCAAGCTTGCAAAAGAACGAGGATGGGCCATCAATGTGGGAGGAGGGTTTCATCATTGTTGTGGGGGAAAAGGAGGTGGATTCTGTGCTTATGCTGATATTTCTCTTTGCATACATTTTGCCTTTGTGCGGTTAAACATATCAAGGGTGATGATTATTGATCTTGATGCGCATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACAGTCGAGTCTATATCCTGGATATGTACAACCCAGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGAGTGGCACTACAACAGCCGAGTACTTGAGAAAGTTAGATGAAGCTCTTGAGGTTGCTGCTCATAATTTTGCTCCTGAGTTGATAGTCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTCTGGGCAGGTTGAAGATCAGTCCTGATGGGATAACTCATAGGGATGAGAAAGTCTTCAGGTTTGCTCTTGAGAGGAATATTCCCATTGTCATGCTCACATCAGGTGGTTACATGAAGTCTAGTGCAAGAGTTATCGCAGACTCGATAGCCAATCTCTCAAACAAATCCGTGATTGATATGGGGAGAAAGACTTCTTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

391

Amino Acids

43.3

Weight (kDa)

8.71

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 92 - 371 1.4e-57 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
AatII GACGTC 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 714
Acc36I ACCTGC 1 cut(s) 966
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 2 cut(s) 217, 454
AccI GTMKAC 1 cut(s) 933
AciI CCGC 4 cut(s) 54, 85, 94, 673
AclWI GGATC 1 cut(s) 959
AcoI YGGCCR 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 1009
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 3 cut(s) 456, 779, 869
AfiI CCNNNNNNNGG 3 cut(s) 322, 526, 672
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 412, 839, 982
AjnI CCWGG 3 cut(s) 519, 768, 784
AluBI AGCT 7 cut(s) 190, 210, 271, 368, 542, 550, 890
AluI AGCT 7 cut(s) 190, 210, 271, 368, 542, 550, 890
Alw21I GWGCWC 1 cut(s) 212
AlwI GGATC 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 570, 727
ApeKI GCWGC 6 cut(s) 131, 168, 271, 490, 542, 902
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 3 cut(s) 381, 1022, 1159
Asp718I GGTACC 1 cut(s) 454
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 2 cut(s) 6, 570
AsuHPI GGTGA 2 cut(s) 37, 703
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 6
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 2 cut(s) 217, 454
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 6 cut(s) 118, 180, 258, 502, 529, 889
BccI CCATC 4 cut(s) 561, 581, 953, 989
BceAI ACGGC 3 cut(s) 81, 156, 205
BciT130I CCWGG 3 cut(s) 521, 770, 786
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 826
BfaI CTAG 2 cut(s) 956, 1089
BfuAI ACCTGC 1 cut(s) 966
BfuI GTATCC 1 cut(s) 185
BglII AGATCT 1 cut(s) 379
BisI GCNGC 7 cut(s) 54, 132, 169, 272, 491, 543, 903
BlsI GCNGC 7 cut(s) 55, 133, 170, 273, 492, 544, 904
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 3 cut(s) 521, 770, 786
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 6, 570
BmiI GGNNCC 3 cut(s) 23, 219, 456
BmrFI CCNGG 3 cut(s) 521, 770, 786
BmsI GCATC 2 cut(s) 700, 724
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 3 cut(s) 892, 914, 1058
BsaBI GATNNNNATC 2 cut(s) 714, 963
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 213, 321, 784
BsaWI WCCGGW 2 cut(s) 8, 139
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 526, 672
Bse118I RCCGGY 1 cut(s) 8
Bse8I GATNNNNATC 2 cut(s) 714, 963
BseBI CCWGG 3 cut(s) 521, 770, 786
BseDI CCNNGG 3 cut(s) 213, 321, 784
BseGI GGATG 3 cut(s) 331, 572, 1018
BseJI GATNNNNATC 2 cut(s) 714, 963
BseLI CCNNNNNNNGG 3 cut(s) 322, 526, 672
BseMII CTCAG 3 cut(s) 175, 517, 912
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 6 cut(s) 118, 180, 258, 502, 529, 889
BsgI GTGCAG 3 cut(s) 257, 450, 509
BshFI GGCC 2 cut(s) 572, 729
BshNI GGYRCC 2 cut(s) 217, 454
BshTI ACCGGT 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 9, 140
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 322, 526, 672
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 572, 729
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 5 cut(s) 379, 703, 826, 964, 984
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 4 cut(s) 54, 85, 94, 673
BspANI GGCC 2 cut(s) 572, 729
BspCNI CTCAG 3 cut(s) 174, 516, 913
BspLI GGNNCC 3 cut(s) 23, 219, 456
BspMI ACCTGC 1 cut(s) 966
BspPI GGATC 1 cut(s) 959
BspT107I GGYRCC 2 cut(s) 217, 454
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 213, 321, 784
BssMI GATC 5 cut(s) 379, 703, 826, 964, 984
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 213, 321
Bst2UI CCWGG 3 cut(s) 521, 770, 786
Bst4CI ACNGT 2 cut(s) 61, 755
Bst6I CTCTTC 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 777
BstC8I GCNNGC 2 cut(s) 188, 552
BstDEI CTNAG 4 cut(s) 161, 503, 538, 921
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 331, 572, 1018
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 5 cut(s) 382, 706, 829, 967, 987
BstMBI GATC 5 cut(s) 379, 703, 826, 964, 984
BstMWI GCNNNNNNNGC 3 cut(s) 93, 437, 551
BstNI CCWGG 3 cut(s) 521, 770, 786
BstSCI CCNGG 3 cut(s) 519, 768, 784
BstV1I GCAGC 6 cut(s) 118, 180, 258, 502, 529, 889
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 1 cut(s) 379
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 572, 729
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 331, 572, 1018
BveI ACCTGC 1 cut(s) 966
Cac8I GCNNGC 2 cut(s) 188, 552
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 6, 570
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 519
Csp6I GTAC 3 cut(s) 455, 778, 868
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 4 cut(s) 322, 731, 1060, 1081
CviQI GTAC 3 cut(s) 455, 778, 868
DdeI CTNAG 4 cut(s) 161, 503, 538, 921
DpnI GATC 5 cut(s) 381, 705, 828, 966, 986
DpnII GATC 5 cut(s) 379, 703, 826, 964, 984
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 213, 321
Eco24I GRGCYC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 1009
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 519, 768, 784
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 213, 321
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 213, 321
FaeI CATG 4 cut(s) 325, 734, 1063, 1084
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 188
FatI CATG 4 cut(s) 321, 730, 1059, 1080
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 7 cut(s) 54, 132, 169, 272, 491, 543, 903
FokI GGATG 3 cut(s) 338, 579, 1025
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 7 cut(s) 54, 132, 169, 272, 491, 543, 903
FspAI RTGCGCAY 1 cut(s) 714
FspBI CTAG 2 cut(s) 956, 1089
FspI TGCGCA 1 cut(s) 714
GlaI GCGC 1 cut(s) 714
GluI GCNGC 7 cut(s) 54, 132, 169, 272, 491, 543, 903
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 2 cut(s) 572, 729
HapII CCGG 2 cut(s) 9, 140
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 325, 734, 1063, 1084
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 9 cut(s) 16, 27, 155, 284, 312, 624, 759, 819, 1109
HpaII CCGG 2 cut(s) 9, 140
HphI GGTGA 2 cut(s) 37, 703
Hpy166II GTNNAC 3 cut(s) 6, 337, 934
Hpy188I TCNGA 5 cut(s) 21, 164, 303, 477, 831
Hpy188III TCNNGA 9 cut(s) 102, 114, 205, 707, 893, 920, 956, 992, 1037
Hpy8I GTNNAC 3 cut(s) 6, 337, 934
Hpy99I CGWCG 2 cut(s) 203, 241
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 61, 755
HpyCH4IV ACGT 2 cut(s) 201, 239
HpyCH4V TGCA 8 cut(s) 274, 348, 394, 431, 490, 554, 654, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 437, 551
HpyF3I CTNAG 4 cut(s) 161, 503, 538, 921
HpySE526I ACGT 2 cut(s) 201, 239
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 325, 734, 1063, 1084
HspAI GCGC 1 cut(s) 713
KpnI GGTACC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 379, 703, 826, 964, 984
LmnI GCTCC 4 cut(s) 116, 139, 215, 922
Lsp1109I GCAGC 6 cut(s) 118, 180, 258, 502, 529, 889
LweI GCATC 2 cut(s) 700, 724
MabI ACCWGGT 1 cut(s) 519
MaeI CTAG 2 cut(s) 956, 1089
MaeII ACGT 2 cut(s) 201, 239
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 5 cut(s) 381, 705, 828, 966, 986
MboI GATC 5 cut(s) 379, 703, 826, 964, 984
MboII GAAGA 6 cut(s) 225, 374, 389, 994, 1015, 1155
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 4 cut(s) 343, 447, 478, 910
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 4 cut(s) 10, 36, 768, 1103
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 729
MroXI GAANNNNTTC 3 cut(s) 381, 1022, 1159
MscI TGGCCA 1 cut(s) 729
MseI TTAA 1 cut(s) 677
MslI CAYNNNNRTG 4 cut(s) 578, 603, 1011, 1058
Msp20I TGGCCA 1 cut(s) 729
MspI CCGG 2 cut(s) 9, 140
MspR9I CCNGG 3 cut(s) 521, 770, 786
MvaI CCWGG 3 cut(s) 521, 770, 786
MwoI GCNNNNNNNGC 3 cut(s) 93, 437, 551
NcoI CCATGG 1 cut(s) 321
NdeII GATC 5 cut(s) 379, 703, 826, 964, 984
NlaIII CATG 4 cut(s) 325, 734, 1063, 1084
NlaIV GGNNCC 3 cut(s) 23, 219, 456
NmeAIII GCCGAG 2 cut(s) 237, 889
NsbI TGCGCA 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 3 cut(s) 381, 1022, 1159
PfeI GAWTC 5 cut(s) 155, 284, 312, 624, 819
PfoI TCCNGGA 1 cut(s) 768
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 7 cut(s) 55, 133, 170, 273, 492, 544, 904
PleI GAGTC 4 cut(s) 10, 35, 767, 1103
PpsI GAGTC 4 cut(s) 10, 35, 767, 1103
Psp124BI GAGCTC 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 519, 768, 784
PspGI CCWGG 3 cut(s) 519, 768, 784
PspN4I GGNNCC 3 cut(s) 23, 219, 456
PspPI GGNCC 2 cut(s) 6, 570
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 3 cut(s) 456, 779, 869
RsaNI GTAC 3 cut(s) 455, 778, 868
RseI CAYNNNNRTG 4 cut(s) 578, 603, 1011, 1058
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 7 cut(s) 54, 132, 169, 272, 491, 543, 903
Sau3AI GATC 5 cut(s) 379, 703, 826, 964, 984
Sau96I GGNCC 2 cut(s) 6, 570
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 4 cut(s) 10, 36, 768, 1103
ScrFI CCNGG 3 cut(s) 521, 770, 786
SduI GDGCHC 1 cut(s) 212
SexAI ACCWGGT 1 cut(s) 519
SfaNI GCATC 2 cut(s) 700, 724
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 4 cut(s) 578, 603, 1011, 1058
SmlI CTYRAG 3 cut(s) 871, 893, 1037
SmoI CTYRAG 3 cut(s) 871, 893, 1037
Sse9I AATT 4 cut(s) 343, 447, 478, 910
SsiI CCGC 4 cut(s) 54, 85, 94, 673
SspI AATATT 1 cut(s) 1048
SspMI CTAG 2 cut(s) 956, 1089
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 519, 768, 784
StyI CCWWGG 2 cut(s) 213, 321
TaaI ACNGT 2 cut(s) 61, 755
TaiI ACGT 2 cut(s) 204, 242
TaqI TCGA 6 cut(s) 14, 198, 236, 282, 757, 1112
TasI AATT 4 cut(s) 343, 447, 478, 910
TatI WGTACW 2 cut(s) 777, 867
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 5 cut(s) 155, 284, 312, 624, 819
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TseI GCWGC 6 cut(s) 131, 168, 271, 490, 542, 902
TspDTI ATGAA 6 cut(s) 584, 747, 811, 822, 900, 1097
TspGWI ACGGA 1 cut(s) 1126
VpaK11BI GGWCC 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 3 cut(s) 381, 1022, 1159
XspI CTAG 2 cut(s) 956, 1089
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.