Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004094.1

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Reverse (-)

211452 .. 216628

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004094.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggaagagagagaagccataggagacttcgctggagtcccgtcaccggcggccggatttcggtcacctgtcaccagtttccaatcacccgccgcgggaatccggtcacctgccgccgcttaccgaacttctctaaaaacctcgccggaggtcgtcagagatctcataggtggagtggtggctatggaggaaggcaatagaggtatgaacatattcatgccattctggaacgatgtcgtttgctgctccacccaactaaacgatgccaaatctctcaggcgcagccgtattctctccagcaagctctactttgacgtcccgagctctaaggttaaaccagtatctaaatttgtttgtgctttcaagtttacatttcggaatctgagaatttcgccaagtttacatctcggcattgagaagctattcttgtccatggatgatgttgtggacaagaattgcattgtagagccaaaggaagttgcaaaggaagatcttgtggtggggaaaccatcttggctgcaaagcttgcaaaagagcgaggatgggccatcaatgtgggaggactgggtttatcattgttgtgggggaaaaggaggtggattctgtgcttataccgatatttctctttgcatacattttgtgcaggtgcggttaaacatatatactcaaggttgggttaggtggactggcggatctgtagttacgttctccgacgaagacgacaatgatttggatctacaaggtctcaaaggcgaaccgatagggcagggcagtggggggcctgagcctagagcttggggtgctcgtgcagatgatgacaggcttcagtttcttcccaaggaagttcagggtaaggacataacagagcttattgcctctggaagggagaagttggcttctgtattgagattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

304

Amino Acids

33.46

Weight (kDa)

5.77

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	118, 634
AatII	GACGTC	1 cut(s)	318
Acc36I	ACCTGC	2 cut(s)	118, 634
AccII	CGCG	1 cut(s)	95
AciI	CCGC	8 cut(s)	50, 90, 93, 95, 114, 117, 649, 690
AclWI	GGATC	2 cut(s)	700, 741
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	347, 387
AcuI	CTGAAG	1 cut(s)	809
AcyI	GRCGYC	1 cut(s)	315
AfiI	CCNNNNNNNGG	5 cut(s)	46, 53, 60, 95, 882
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	6 cut(s)	304, 324, 421, 525, 794, 868
AluI	AGCT	6 cut(s)	304, 324, 421, 525, 794, 868
Alw21I	GWGCWC	2 cut(s)	326, 805
Alw26I	GTCTC	2 cut(s)	18, 749
AlwI	GGATC	2 cut(s)	700, 741
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	3 cut(s)	51, 545, 779
ApeKI	GCWGC	3 cut(s)	243, 282, 517
ApoI	RAATTY	2 cut(s)	347, 387
Asp700I	GAANNNNTTC	2 cut(s)	212, 422
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	545, 779
AsuHPI	GGTGA	5 cut(s)	36, 57, 64, 78, 99
AvaI	CYCGRG	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	326, 805
BbvI	GCAGC	3 cut(s)	230, 294, 504
BccI	CCATC	3 cut(s)	517, 536, 556
BceAI	ACGGC	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	18, 749
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	2 cut(s)	118, 634
BglII	AGATCT	2 cut(s)	160, 490
BisI	GCNGC	7 cut(s)	51, 93, 114, 117, 244, 283, 518
BlsI	GCNGC	7 cut(s)	52, 94, 115, 118, 245, 284, 519
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	545, 779
BmiI	GGNNCC	1 cut(s)	780
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	723
BpmI	CTGGAG	2 cut(s)	54, 280
Bpu10I	CCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	93, 432, 837
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 53, 60, 95, 882
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	4 cut(s)	75, 338, 569, 691
Bse8I	GATNNNNATC	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	93, 432, 837
BseGI	GGATG	2 cut(s)	442, 547
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	5 cut(s)	46, 53, 60, 95, 882
BseMII	CTCAG	3 cut(s)	289, 374, 774
BseNI	ACTGG	4 cut(s)	75, 338, 569, 691
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	230, 294, 504
BsgI	GTGCAG	2 cut(s)	662, 828
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	53, 547, 781
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	326, 805
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	4 cut(s)	47, 54, 103, 146
BslFI	GGGAC	2 cut(s)	23, 302
BslI	CCNNNNNNNGG	5 cut(s)	46, 53, 60, 95, 882
BsmAI	GTCTC	2 cut(s)	18, 749
BsmFI	GGGAC	2 cut(s)	23, 302
BsnI	GGCC	3 cut(s)	53, 547, 781
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	326, 805
Bsp143I	GATC	4 cut(s)	160, 490, 692, 733
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	8 cut(s)	50, 90, 93, 95, 114, 117, 649, 690
BspANI	GGCC	3 cut(s)	53, 547, 781
BspCNI	CTCAG	3 cut(s)	288, 375, 775
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	780
BspMI	ACCTGC	2 cut(s)	118, 634
BspPI	GGATC	2 cut(s)	700, 741
BspTNI	GGTCTC	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	75, 338, 569, 691
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	93, 432, 837
BssMI	GATC	4 cut(s)	160, 490, 692, 733
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	1 cut(s)	804
BssT1I	CCWWGG	2 cut(s)	432, 837
Bst2BI	CACGAG	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	302, 527
BstDEI	CTNAG	4 cut(s)	275, 327, 383, 783
BstDSI	CCRYGG	2 cut(s)	93, 432
BstEII	GGTNACC	2 cut(s)	63, 105
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	2 cut(s)	442, 547
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	4 cut(s)	163, 493, 695, 736
BstMAI	GTCTC	2 cut(s)	18, 749
BstMBI	GATC	4 cut(s)	160, 490, 692, 733
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 800
BstPI	GGTNACC	2 cut(s)	63, 105
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	230, 294, 504
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	4 cut(s)	160, 490, 692, 733
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	4 cut(s)	160, 490, 692, 733
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	53, 547, 781
BtgI	CCRYGG	2 cut(s)	93, 432
BtsCI	GGATG	2 cut(s)	442, 547
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
BveI	ACCTGC	2 cut(s)	118, 634
Cac8I	GCNNGC	2 cut(s)	302, 527
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	545, 779
Cfr42I	CCGCGG	1 cut(s)	96
CviAII	CATG	2 cut(s)	217, 433
DdeI	CTNAG	4 cut(s)	275, 327, 383, 783
DpnI	GATC	4 cut(s)	162, 492, 694, 735
DpnII	GATC	4 cut(s)	160, 490, 692, 733
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	324
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	432, 837
Eco24I	GRGCYC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	749
Eco52I	CGGCCG	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	319
Eco91I	GGTNACC	2 cut(s)	63, 105
EcoICRI	GAGCTC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoO109I	RGGNCCY	1 cut(s)	779
EcoO65I	GGTNACC	2 cut(s)	63, 105
EcoT14I	CCWWGG	2 cut(s)	432, 837
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	432, 837
FaeI	CATG	2 cut(s)	220, 436
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 410, 442
FaqI	GGGAC	2 cut(s)	23, 302
FatI	CATG	2 cut(s)	216, 432
FauI	CCCGC	2 cut(s)	88, 97
Fnu4HI	GCNGC	7 cut(s)	51, 93, 114, 117, 244, 283, 518
FokI	GGATG	2 cut(s)	449, 554
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	7 cut(s)	51, 93, 114, 117, 244, 283, 518
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	7 cut(s)	51, 93, 114, 117, 244, 283, 518
GsuI	CTGGAG	2 cut(s)	54, 280
HaeIII	GGCC	3 cut(s)	53, 547, 781
HapII	CCGG	4 cut(s)	47, 54, 103, 146
HhaI	GCGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	220, 436
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	4 cut(s)	36, 99, 379, 600
HpaII	CCGG	4 cut(s)	47, 54, 103, 146
HphI	GGTGA	5 cut(s)	36, 57, 64, 78, 99
Hpy166II	GTNNAC	4 cut(s)	369, 401, 448, 684
Hpy188I	TCNGA	4 cut(s)	158, 378, 384, 712
Hpy188III	TCNNGA	3 cut(s)	226, 319, 879
Hpy8I	GTNNAC	4 cut(s)	369, 401, 448, 684
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	2 cut(s)	185, 876
HpyCH4IV	ACGT	2 cut(s)	315, 704
HpyCH4V	TGCA	7 cut(s)	459, 482, 520, 529, 630, 643, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 800
HpyF3I	CTNAG	4 cut(s)	275, 327, 383, 783
HpySE526I	ACGT	2 cut(s)	315, 704
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	220, 436
HspAI	GCGC	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	160, 490, 692, 733
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	3 cut(s)	230, 294, 504
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	315, 704
MaeIII	GTNAC	5 cut(s)	42, 63, 70, 105, 700
MalI	GATC	4 cut(s)	162, 492, 694, 735
MboI	GATC	4 cut(s)	160, 490, 692, 733
MboII	GAAGA	4 cut(s)	17, 500, 728, 824
MflI	RGATCY	4 cut(s)	160, 490, 692, 733
MhlI	GDGCHC	2 cut(s)	326, 805
MluCI	AATT	3 cut(s)	347, 387, 454
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	8 cut(s)	142, 151, 181, 194, 532, 553, 587, 886
MroXI	GAANNNNTTC	2 cut(s)	212, 422
MseI	TTAA	2 cut(s)	333, 653
MslI	CAYNNNNRTG	3 cut(s)	215, 553, 579
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	4 cut(s)	47, 54, 103, 146
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	526, 800
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	4 cut(s)	160, 490, 692, 733
NlaIII	CATG	2 cut(s)	220, 436
NlaIV	GGNNCC	1 cut(s)	780
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	4 cut(s)	42, 63, 70, 105
PaqCI	CACCTGC	2 cut(s)	118, 634
PdmI	GAANNNNTTC	2 cut(s)	212, 422
PfeI	GAWTC	3 cut(s)	99, 379, 600
PkrI	GCNGC	7 cut(s)	52, 94, 115, 118, 245, 284, 519
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	326
PspEI	GGTNACC	2 cut(s)	63, 105
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	2 cut(s)	545, 779
PsuI	RGATCY	4 cut(s)	160, 490, 692, 733
RseI	CAYNNNNRTG	3 cut(s)	215, 553, 579
SacI	GAGCTC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	333, 653
SatI	GCNGC	7 cut(s)	51, 93, 114, 117, 244, 283, 518
Sau3AI	GATC	4 cut(s)	160, 490, 692, 733
Sau96I	GGNCC	2 cut(s)	545, 779
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	326, 805
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	696
Sfr303I	CCGCGG	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	3 cut(s)	215, 553, 579
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	3 cut(s)	347, 387, 454
SsiI	CCGC	8 cut(s)	50, 90, 93, 95, 114, 117, 649, 690
SspMI	CTAG	1 cut(s)	789
SstI	GAGCTC	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	432, 837
TaiI	ACGT	2 cut(s)	318, 707
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	347, 387, 454
TauI	GCSGC	4 cut(s)	53, 95, 116, 119
TfiI	GAWTC	3 cut(s)	99, 379, 600
Tru1I	TTAA	2 cut(s)	333, 653
Tru9I	TTAA	2 cut(s)	333, 653
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	4 cut(s)	42, 63, 70, 105
TseI	GCWGC	3 cut(s)	243, 282, 517
Tsp45I	GTSAC	4 cut(s)	42, 63, 70, 105
TspDTI	ATGAA	2 cut(s)	205, 221
TspRI	CASTG	1 cut(s)	778
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	2 cut(s)	347, 387
XmnI	GAANNNNTTC	2 cut(s)	212, 422
XspI	CTAG	1 cut(s)	789
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.