MD08G1043300.v1.1

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0001640
Physical Location & Seq
Forward (+)
3272752 .. 3276342
3591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1043300.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGAAGAACTCAGTCATGCCGATTTGGACCGAGTCGACTCGGAATCTAATCACACCAGTCGTCGTTTTGGTCATCACATTCGCCGCCACCGTCAAACTCTCTCAGTCTCTCTACCGCTACAGCCGCCGCCGTGCGAGAAATCGGTCTGAAACGATGTCGCCCGCTTCCTCGTCTGGAAACGACGCCGACGTGCGGCGCAGCCGTGTTCGCTCCAGCAAGCTATACTTCGACATCCCAAACTCCAAGGTGCCGTTGATTTACTCGTCCGCGTATGATATTTCGTTTCTTGGCATCGAGAAACTGCACCCGTTTGATTCGGCTAAGTGGGGTCGCATATGTGGTTTTCTGTTGGTGGATAATGTTGTGGATAAAAATTGCATCGTCGAGCCTCGGGAAGCTTCAAAGAATGATCTCCTTGTGGTCCATTCAGAAGCATACTTGAATAGTTTAAAGAAAAGTGCAAATGTTGCTATGATAATTGAGGTACCTCCGGTGGCTGTATTCCCGAATTGCCTTGTGCAGCAGAAAGTTCTTTATCCATTTCTCAACCAGGTGGGGGGTACTGTCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATATTGGGGGAGGGTTTCATCATTGCTCAGGGGAGAAAGGAGGGGGATTCTGTGTGTATGCAGATATTTCTCTTTGCATACACTTTGCCTTTGAGTTGTTAAATATATCAAGAGTGATGATTATTGATCTTGATGCACATCAAGGAAACGGCCATGAGACGGATTTTGCCAATGACAGTCGAGTCTATATACTGGATATGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGGAGGTACATTGATCAGAAGGTTGAAGTAGCGAGTGGAACGACAACAAATGAGTACTTGAGAAAATTAGATGAAGCGCTTGAGGTTGCTGTGCATAGTTTTGATCCTGAGTTGATAGTCTACAATGCTGGAACTGATATTCTAGATGGAGATCCTCTAGGCCAGTTGAAGGTCAGTCCTGATGGGATAACTAATAGAGATGAGAAAGTGTTTAGTTTTGCTCGCAACAGAAACATTCCTATTGTCATGCTCACATCAGGTGGTTACATGAAGTCTAGTGCCAGAGTTATAGCAAACTCGATAACCAATCTCTCGAAGAAAAGCCTGATAGATACGGGTAAAAACATCACTATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

401

Amino Acids

44.46

Weight (kDa)

8.58

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 102 - 383 6.6e-57 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 247, 484
AccI GTMKAC 2 cut(s) 35, 963
AccII CGCG 1 cut(s) 269
AciI CCGC 7 cut(s) 84, 115, 124, 127, 162, 193, 267
AclWI GGATC 2 cut(s) 941, 989
AcoI YGGCCR 1 cut(s) 757
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 5 cut(s) 486, 562, 809, 851, 899
AfeI AGCGCT 1 cut(s) 921
AfiI CCNNNNNNNGG 4 cut(s) 192, 556, 766, 1012
AgsI TTSAA 4 cut(s) 402, 442, 869, 1012
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 549, 814
AluBI AGCT 3 cut(s) 220, 398, 580
AluI AGCT 3 cut(s) 220, 398, 580
Alw26I GTCTC 2 cut(s) 111, 758
AlwI GGATC 2 cut(s) 941, 989
Ama87I CYCGRG 1 cut(s) 390
Aor51HI AGCGCT 1 cut(s) 921
AoxI GGCC 3 cut(s) 600, 757, 1003
ApeKI GCWGC 3 cut(s) 198, 520, 572
Asp718I GGTACC 1 cut(s) 484
AspLEI GCGC 2 cut(s) 198, 922
AspS9I GGNCC 3 cut(s) 27, 421, 600
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 27, 421
BanI GGYRCC 2 cut(s) 247, 484
BbvI GCAGC 3 cut(s) 210, 532, 559
BccI CCATC 4 cut(s) 591, 611, 983, 1019
BceAI ACGGC 4 cut(s) 114, 186, 235, 772
BciT130I CCWGG 2 cut(s) 551, 816
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 2 cut(s) 111, 758
BfaI CTAG 3 cut(s) 986, 1001, 1119
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 923
BisI GCNGC 7 cut(s) 84, 124, 127, 194, 199, 521, 573
BlsI GCNGC 7 cut(s) 85, 125, 128, 195, 200, 522, 574
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 2 cut(s) 551, 816
Bme18I GGWCC 2 cut(s) 27, 421
BmeT110I CYCGRG 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 27, 421, 600
BmiI GGNNCC 2 cut(s) 249, 486
BmrFI CCNGG 2 cut(s) 551, 816
BmsI GCATC 3 cut(s) 300, 387, 730
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 634
BpuEI CTTGAG 2 cut(s) 922, 944
BsaBI GATNNNNATC 2 cut(s) 744, 993
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 243, 389, 814
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 556, 766, 1012
Bse1I ACTGG 3 cut(s) 56, 804, 1006
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 2 cut(s) 744, 993
BseBI CCWGG 2 cut(s) 551, 816
BseDI CCNNGG 3 cut(s) 243, 389, 814
BseGI GGATG 2 cut(s) 231, 602
BseJI GATNNNNATC 2 cut(s) 744, 993
BseLI CCNNNNNNNGG 4 cut(s) 192, 556, 766, 1012
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 4 cut(s) 24, 116, 648, 942
BseNI ACTGG 3 cut(s) 56, 804, 1006
BseXI GCAGC 3 cut(s) 210, 532, 559
BsgI GTGCAG 2 cut(s) 287, 539
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 3 cut(s) 602, 759, 1005
BshNI GGYRCC 2 cut(s) 247, 484
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 192, 556, 766, 1012
BsmAI GTCTC 2 cut(s) 111, 758
BsmBI CGTCTC 1 cut(s) 758
BsnI GGCC 3 cut(s) 602, 759, 1005
BsoBI CYCGRG 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 5 cut(s) 409, 733, 856, 946, 994
BspACI CCGC 7 cut(s) 84, 115, 124, 127, 162, 193, 267
BspANI GGCC 3 cut(s) 602, 759, 1005
BspCNI CTCAG 4 cut(s) 23, 115, 647, 943
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 249, 486
BspPI GGATC 2 cut(s) 941, 989
BspT107I GGYRCC 2 cut(s) 247, 484
BsrDI GCAATG 1 cut(s) 628
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 3 cut(s) 56, 804, 1006
BssECI CCNNGG 3 cut(s) 243, 389, 814
BssMI GATC 5 cut(s) 409, 733, 856, 946, 994
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 551, 816
Bst4CI ACNGT 3 cut(s) 91, 565, 785
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 2 cut(s) 467, 581
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 4 cut(s) 162, 218, 582, 1066
BstDEI CTNAG 5 cut(s) 10, 102, 321, 634, 951
BstF5I GGATG 2 cut(s) 231, 602
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 923
BstHHI GCGC 2 cut(s) 198, 922
BstKTI GATC 5 cut(s) 412, 736, 859, 949, 997
BstMAI GTCTC 2 cut(s) 111, 758
BstMBI GATC 5 cut(s) 409, 733, 856, 946, 994
BstMWI GCNNNNNNNGC 4 cut(s) 123, 207, 467, 581
BstNI CCWGG 2 cut(s) 551, 816
BstSCI CCNGG 2 cut(s) 549, 814
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 210, 532, 559
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
BsuRI GGCC 3 cut(s) 602, 759, 1005
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 231, 602
Cac8I GCNNGC 4 cut(s) 162, 218, 582, 1066
CfoI GCGC 2 cut(s) 198, 922
Cfr13I GGNCC 3 cut(s) 27, 421, 600
CseI GACGC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 5 cut(s) 485, 561, 808, 850, 898
CviAII CATG 4 cut(s) 16, 761, 1090, 1111
CviQI GTAC 5 cut(s) 485, 561, 808, 850, 898
DdeI CTNAG 5 cut(s) 10, 102, 321, 634, 951
DpnI GATC 5 cut(s) 411, 735, 858, 948, 996
DpnII GATC 5 cut(s) 409, 733, 856, 946, 994
DraI TTTAAA 1 cut(s) 450
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 27, 421
Eco47III AGCGCT 1 cut(s) 921
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 549, 814
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 758
FaeI CATG 4 cut(s) 19, 764, 1093, 1114
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 4 cut(s) 15, 760, 1089, 1110
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 1 cut(s) 335
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 2 cut(s) 35, 963
Fnu4HI GCNGC 7 cut(s) 84, 124, 127, 194, 199, 521, 573
FokI GGATG 2 cut(s) 218, 609
Fsp4HI GCNGC 7 cut(s) 84, 124, 127, 194, 199, 521, 573
FspBI CTAG 3 cut(s) 986, 1001, 1119
GlaI GCGC 2 cut(s) 197, 921
GluI GCNGC 7 cut(s) 84, 124, 127, 194, 199, 521, 573
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 923
HaeIII GGCC 3 cut(s) 602, 759, 1005
HapII CCGG 1 cut(s) 491
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 198, 922
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 19, 764, 1093, 1114
Hin6I GCGC 2 cut(s) 196, 920
HinP1I GCGC 2 cut(s) 196, 920
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 2 cut(s) 396, 578
HinfI GANTC 6 cut(s) 32, 37, 43, 314, 654, 789
HpaII CCGG 1 cut(s) 491
Hpy166II GTNNAC 2 cut(s) 36, 964
Hpy188I TCNGA 4 cut(s) 42, 148, 430, 861
Hpy8I GTNNAC 2 cut(s) 36, 964
Hpy99I CGWCG 4 cut(s) 65, 185, 191, 386
HpyAV CCTTC 2 cut(s) 856, 1006
HpyCH4III ACNGT 3 cut(s) 91, 565, 785
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 207, 467, 581
HpyF3I CTNAG 5 cut(s) 10, 102, 321, 634, 951
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 19, 764, 1093, 1114
HspAI GCGC 2 cut(s) 196, 920
KpnI GGTACC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 5 cut(s) 409, 733, 856, 946, 994
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 210, 532, 559
LweI GCATC 3 cut(s) 300, 387, 730
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 3 cut(s) 986, 1001, 1119
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 1106
MalI GATC 5 cut(s) 411, 735, 858, 948, 996
MboI GATC 5 cut(s) 409, 733, 856, 946, 994
MboII GAAGA 2 cut(s) 16, 1171
MflI RGATCY 1 cut(s) 994
MluCI AATT 4 cut(s) 373, 477, 508, 908
MlyI GAGTC 3 cut(s) 31, 41, 798
MseI TTAA 2 cut(s) 449, 707
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 551, 816
MvaI CCWGG 2 cut(s) 551, 816
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 123, 207, 467, 581
NdeI CATATG 1 cut(s) 335
NdeII GATC 5 cut(s) 409, 733, 856, 946, 994
NlaIII CATG 4 cut(s) 19, 764, 1093, 1114
NlaIV GGNNCC 2 cut(s) 249, 486
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 186
PfeI GAWTC 3 cut(s) 43, 314, 654
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 7 cut(s) 85, 125, 128, 195, 200, 522, 574
PleI GAGTC 3 cut(s) 31, 40, 797
PpsI GAGTC 3 cut(s) 31, 40, 797
Psp6I CCWGG 2 cut(s) 549, 814
PspGI CCWGG 2 cut(s) 549, 814
PspN4I GGNNCC 2 cut(s) 249, 486
PspPI GGNCC 3 cut(s) 27, 421, 600
PsuI RGATCY 1 cut(s) 994
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 5 cut(s) 486, 562, 809, 851, 899
RsaNI GTAC 5 cut(s) 485, 561, 808, 850, 898
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 449, 707
SatI GCNGC 7 cut(s) 84, 124, 127, 194, 199, 521, 573
Sau3AI GATC 5 cut(s) 409, 733, 856, 946, 994
Sau96I GGNCC 3 cut(s) 27, 421, 600
ScaI AGTACT 1 cut(s) 899
SchI GAGTC 3 cut(s) 31, 41, 798
ScrFI CCNGG 2 cut(s) 551, 816
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 3 cut(s) 300, 387, 730
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 2 cut(s) 27, 421
SmlI CTYRAG 2 cut(s) 901, 923
SmoI CTYRAG 2 cut(s) 901, 923
Sse9I AATT 4 cut(s) 373, 477, 508, 908
SsiI CCGC 7 cut(s) 84, 115, 124, 127, 162, 193, 267
SspI AATATT 1 cut(s) 610
SspMI CTAG 3 cut(s) 986, 1001, 1119
StyD4I CCNGG 2 cut(s) 549, 814
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 91, 565, 785
TaiI ACGT 1 cut(s) 192
TaqI TCGA 7 cut(s) 35, 228, 294, 384, 787, 1142, 1157
TaqII GACCGA 2 cut(s) 44, 132
TasI AATT 4 cut(s) 373, 477, 508, 908
TatI WGTACW 2 cut(s) 807, 897
TauI GCSGC 4 cut(s) 86, 126, 129, 196
TfiI GAWTC 3 cut(s) 43, 314, 654
Tru1I TTAA 2 cut(s) 449, 707
Tru9I TTAA 2 cut(s) 449, 707
TseI GCWGC 3 cut(s) 198, 520, 572
TspDTI ATGAA 5 cut(s) 17, 614, 852, 930, 1127
TspGWI ACGGA 1 cut(s) 782
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 27, 421
XbaI TCTAGA 1 cut(s) 985
XmiI GTMKAC 2 cut(s) 35, 963
XspI CTAG 3 cut(s) 986, 1001, 1119
ZrmI AGTACT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.