Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Forward (+)

55015381 .. 55017057

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGTTTGCTGCTCTACCTGAAAATGACGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCCATCAAACTCTACTTTGACGTCCCGAGCTTCAAGGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTTGGAATATGAGAATTTCGCCAAGTTTACATCTCGGCATTGAGAAGCTATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGAAAGTGCAGATGTGGCTATGATAATTGAGGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGGGGAAGAAAAGAGAATAAGGATTTACTGTGAGCGAGGATGGGCCATTAATGTCGGAGGACTGGGTTTTATCATTGTTGTAGGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTCTGCAGGGTGATGATTATTAATCTTAATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACATCTATATCTTGGATATGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGGGGTGAGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

224

Amino Acids

25.46

Weight (kDa)

5.85

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	113, 153
AcyI	GRCGYC	2 cut(s)	30, 81
AfaI	GTAC	2 cut(s)	297, 593
AgsI	TTSAA	3 cut(s)	94, 130, 653
AjnI	CCWGG	2 cut(s)	363, 598
AluBI	AGCT	3 cut(s)	90, 187, 245
AluI	AGCT	3 cut(s)	90, 187, 245
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	408, 547
ApeKI	GCWGC	4 cut(s)	11, 48, 245, 331
ApoI	RAATTY	2 cut(s)	113, 153
AseI	ATTAAT	2 cut(s)	414, 522
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	60, 232, 343
BccI	CCATC	2 cut(s)	71, 399
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	365, 600
BclI	TGATCA	1 cut(s)	640
BfmI	CTRYAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	12, 49, 246, 332
BlsI	GCNGC	4 cut(s)	13, 50, 247, 333
Bme1390I	CCNGG	2 cut(s)	365, 600
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	2 cut(s)	365, 600
BmrI	ACTGGG	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	437
BsaHI	GRCGYC	2 cut(s)	30, 81
BsaJI	CCNNGG	3 cut(s)	198, 364, 598
Bse1I	ACTGG	2 cut(s)	104, 432
BseBI	CCWGG	2 cut(s)	365, 600
BseDI	CCNNGG	3 cut(s)	198, 364, 598
BseGI	GGATG	2 cut(s)	208, 410
BseMII	CTCAG	2 cut(s)	55, 358
BseNI	ACTGG	2 cut(s)	104, 432
BseXI	GCAGC	3 cut(s)	60, 232, 343
BsgI	GTGCAG	2 cut(s)	291, 350
BshFI	GGCC	2 cut(s)	410, 549
BshNI	GGYRCC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	410, 549
BsoBI	CYCGRG	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	256, 640
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	2 cut(s)	410, 549
BspCNI	CTCAG	2 cut(s)	54, 357
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	104, 432
BssECI	CCNNGG	3 cut(s)	198, 364, 598
BssMI	GATC	2 cut(s)	256, 640
BssNI	GRCGYC	2 cut(s)	30, 81
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	365, 600
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	2 cut(s)	30, 81
BstAUI	TGTACA	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	41, 344
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	208, 410
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	259, 643
BstMBI	GATC	2 cut(s)	256, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	365, 600
BstSCI	CCNGG	2 cut(s)	363, 598
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	60, 232, 343
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	410, 549
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	208, 410
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	296, 592
CviAII	CATG	2 cut(s)	199, 551
CviJI	RGCY	9 cut(s)	51, 90, 187, 235, 245, 281, 410, 549, 666
CviKI_1	RGCY	9 cut(s)	51, 90, 187, 235, 245, 281, 410, 549, 666
CviQI	GTAC	2 cut(s)	296, 592
DdeI	CTNAG	2 cut(s)	41, 344
DpnI	GATC	2 cut(s)	258, 642
DpnII	GATC	2 cut(s)	256, 640
EaeI	YGGCCR	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	363, 598
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	202, 554
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	198, 550
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	12, 49, 246, 332
FokI	GGATG	2 cut(s)	215, 417
Fsp4HI	GCNGC	4 cut(s)	12, 49, 246, 332
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	12, 49, 246, 332
HaeIII	GGCC	2 cut(s)	410, 549
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	2 cut(s)	30, 81
Hin1II	CATG	2 cut(s)	202, 554
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	464, 633
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	135, 167, 214
Hpy188I	TCNGA	2 cut(s)	422, 645
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	3 cut(s)	135, 167, 214
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	225, 248, 272, 331, 494, 507, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	41, 344
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	30, 81
Hsp92II	CATG	2 cut(s)	202, 554
HspAI	GCGC	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	256, 640
Lsp1109I	GCAGC	3 cut(s)	60, 232, 343
MaeII	ACGT	1 cut(s)	81
MalI	GATC	2 cut(s)	258, 642
MboI	GATC	2 cut(s)	256, 640
MboII	GAAGA	2 cut(s)	266, 383
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	5 cut(s)	113, 153, 220, 288, 319
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	7 cut(s)	286, 309, 360, 395, 416, 451, 639
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	3 cut(s)	414, 522, 528
Msp20I	TGGCCA	1 cut(s)	549
MspR9I	CCNGG	2 cut(s)	365, 600
MvaI	CCWGG	2 cut(s)	365, 600
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	256, 640
NlaIII	CATG	2 cut(s)	202, 554
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	464, 633
PkrI	GCNGC	4 cut(s)	13, 50, 247, 333
PshBI	ATTAAT	2 cut(s)	414, 522
Psp6I	CCWGG	2 cut(s)	363, 598
PspGI	CCWGG	2 cut(s)	363, 598
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	297, 593
RsaNI	GTAC	2 cut(s)	296, 592
SaqAI	TTAA	3 cut(s)	414, 522, 528
SatI	GCNGC	4 cut(s)	12, 49, 246, 332
Sau3AI	GATC	2 cut(s)	256, 640
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	2 cut(s)	365, 600
SetI	ASST	9 cut(s)	22, 84, 92, 99, 189, 247, 297, 301, 462
SfcI	CTRYAG	1 cut(s)	505
Sse9I	AATT	5 cut(s)	113, 153, 220, 288, 319
StyD4I	CCNGG	2 cut(s)	363, 598
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	84
TasI	AATT	5 cut(s)	113, 153, 220, 288, 319
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	2 cut(s)	464, 633
Tru1I	TTAA	3 cut(s)	414, 522, 528
Tru9I	TTAA	3 cut(s)	414, 522, 528
TseI	GCWGC	4 cut(s)	11, 48, 245, 331
TspDTI	ATGAA	3 cut(s)	567, 625, 636
VspI	ATTAAT	2 cut(s)	414, 522
XapI	RAATTY	2 cut(s)	113, 153
XmnI	GAANNNNTTC	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.