Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Forward (+)

73326764 .. 73328438

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCGTTTGCTGCTCCACCTGAAAACGACGCCAAATCTCTCAGGCGCAGCTGTATTCTCTCCAGCAAACTCTACTTTGACGTCCCGAGCTTCAAGGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTCGGAATATGAGAATTTCGCCAAGTTTACATCTCGACATTGAGAAGCTGCATCCGTTCAATTTGGCTAAATGGGGTCGGGTATATATAGATTCTTGTACCTCCTGTTGCCTGTTTCCAAATTGCCTTGTGCAACAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGCAATTCCGAGGATGGGCCATCAATGTGGGAGGACTGGGTTTTATCATTGTTGTAGGGGAAAAAGAGGTGGATTCTGTGCTTATACCGTTATTTCTCTTTGCATACATTTTCTGCAGGTGCGGGTGATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACATCTATATCCTAGATATGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGGTGAGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

197

Amino Acids

22.53

Weight (kDa)

9.09

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	111 - 181	6.9e-11	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	2 cut(s)	427, 578
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	113, 153
AcyI	GRCGYC	2 cut(s)	30, 81
AfaI	GTAC	2 cut(s)	238, 512
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	94, 130, 199, 572
AjnI	CCWGG	2 cut(s)	303, 517
AluBI	AGCT	3 cut(s)	51, 90, 187
AluI	AGCT	3 cut(s)	51, 90, 187
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	322, 466
ApeKI	GCWGC	3 cut(s)	11, 48, 187
ApoI	RAATTY	2 cut(s)	113, 153
AseI	ATTAAT	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	60, 174
BccI	CCATC	2 cut(s)	313, 333
BciT130I	CCWGG	2 cut(s)	305, 519
BclI	TGATCA	1 cut(s)	559
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	3 cut(s)	12, 49, 188
BlsI	GCNGC	3 cut(s)	13, 50, 189
Bme1390I	CCNGG	2 cut(s)	305, 519
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	305, 519
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	199, 439
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	2 cut(s)	30, 81
BsaJI	CCNNGG	2 cut(s)	314, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	585
Bse1I	ACTGG	2 cut(s)	104, 346
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	305, 519
BseDI	CCNNGG	2 cut(s)	314, 517
BseGI	GGATG	2 cut(s)	190, 324
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	55, 298
BseNI	ACTGG	2 cut(s)	104, 346
BseXI	GCAGC	2 cut(s)	60, 174
BshFI	GGCC	2 cut(s)	324, 468
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	324, 468
BsoBI	CYCGRG	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	2 cut(s)	427, 578
BspANI	GGCC	2 cut(s)	324, 468
BspCNI	CTCAG	2 cut(s)	54, 297
BspMAI	CTGCAG	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	104, 346
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	2 cut(s)	314, 517
BssMI	GATC	1 cut(s)	559
BssNI	GRCGYC	2 cut(s)	30, 81
Bst2UI	CCWGG	2 cut(s)	305, 519
Bst4CI	ACNGT	1 cut(s)	394
BstACI	GRCGYC	2 cut(s)	30, 81
BstAUI	TGTACA	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	41, 284
BstF5I	GGATG	2 cut(s)	190, 324
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	559
BstNI	CCWGG	2 cut(s)	305, 519
BstSCI	CCNGG	2 cut(s)	303, 517
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	60, 174
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	324, 468
BtsCI	GGATG	2 cut(s)	190, 324
BveI	ACCTGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	237, 511
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	7 cut(s)	51, 90, 187, 206, 324, 468, 585
CviKI_1	RGCY	7 cut(s)	51, 90, 187, 206, 324, 468, 585
CviQI	GTAC	2 cut(s)	237, 511
DdeI	CTNAG	2 cut(s)	41, 284
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	303, 517
FaeI	CATG	1 cut(s)	473
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	469
FauI	CCCGC	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	3 cut(s)	12, 49, 188
FokI	GGATG	2 cut(s)	177, 331
Fsp4HI	GCNGC	3 cut(s)	12, 49, 188
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	12, 49, 188
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	324, 468
HapII	CCGG	1 cut(s)	586
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	2 cut(s)	30, 81
Hin1II	CATG	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	230, 378, 552
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	135, 167
Hpy188I	TCNGA	3 cut(s)	144, 315, 564
Hpy188III	TCNNGA	3 cut(s)	85, 173, 446
Hpy8I	GTNNAC	2 cut(s)	135, 167
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	190, 271, 408, 421, 452
HpyF3I	CTNAG	2 cut(s)	41, 284
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	30, 81
Hsp92II	CATG	1 cut(s)	473
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	2 cut(s)	60, 174
LweI	GCATC	2 cut(s)	199, 439
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	5 cut(s)	113, 153, 199, 259, 309
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	6 cut(s)	250, 300, 309, 330, 365, 558
Mox20I	TGGCCA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	305, 519
MvaI	CCWGG	2 cut(s)	305, 519
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	230, 378, 552
PkrI	GCNGC	3 cut(s)	13, 50, 189
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	303, 517
PspGI	CCWGG	2 cut(s)	303, 517
PspPI	GGNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	2 cut(s)	238, 512
RsaNI	GTAC	2 cut(s)	237, 511
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	12, 49, 188
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	305, 519
SetI	ASST	9 cut(s)	22, 53, 84, 92, 99, 189, 242, 376, 426
SfaNI	GCATC	2 cut(s)	199, 439
SfcI	CTRYAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	5 cut(s)	113, 153, 199, 259, 309
SsiI	CCGC	2 cut(s)	427, 578
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	303, 517
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	174
TasI	AATT	5 cut(s)	113, 153, 199, 259, 309
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	230, 378, 552
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseI	GCWGC	3 cut(s)	11, 48, 187
TspDTI	ATGAA	3 cut(s)	486, 544, 555
TspGWI	ACGGA	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	2 cut(s)	113, 153
XspI	CTAG	1 cut(s)	503
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.