Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Reverse (-)

2640633 .. 2643798

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCGTCGTCTATTGGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGGCGGAACAGCCGTATTCTCTCCAGCAAGCTCTACTTTGACGTCCCGAGCTCCAAGGCATCCGTTCGATTCTGCTAAATGGGGTCGGATATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCCTGTGCTAGATTTACTTACTATTGGTAACTTTGATCATTTGCATACAGAAGCATACTTGAATAGTCTAAAGGAAAGTGCAGATGTGGCTATGATAATTAAGGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGACCATCAATGTGGGAGGACTGGGTTTATCATTGTTGTGGGGGAAAAGGAAGTGGATTATGTGCTTATACGGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGTTAAACATACTTGAGGTACTAACTATTGCACATCAGATGAATAGCTACATTATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

5.13

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AarI	CACCTGC	1 cut(s)	451
AatII	GACGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	2 cut(s)	51, 466
AclWI	GGATC	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	5 cut(s)	78, 98, 200, 342, 513
AluI	AGCT	5 cut(s)	78, 98, 200, 342, 513
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	200, 334
AspS9I	GGNCC	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	187, 321
BccI	CCATC	3 cut(s)	334, 353, 373
BceAI	ACGGC	1 cut(s)	44
BclI	TGATCA	1 cut(s)	247
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	201, 335
BlsI	GCNGC	2 cut(s)	202, 336
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	101, 153
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	101, 153
BseGI	GGATG	3 cut(s)	106, 163, 364
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	187, 321
BsgI	GTGCAG	2 cut(s)	312, 479
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	211, 247
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	51, 466
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	101, 153
BssMI	GATC	2 cut(s)	211, 247
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	101, 153
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	76, 344
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	106, 163, 364
BstKTI	GATC	2 cut(s)	214, 250
BstMBI	GATC	2 cut(s)	211, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 299, 343
BstV1I	GCAGC	2 cut(s)	187, 321
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	106, 163, 364
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	76, 344
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	1 cut(s)	485
DpnI	GATC	2 cut(s)	213, 249
DpnII	GATC	2 cut(s)	211, 247
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	101, 153
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	101, 153
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	101, 153
FaeI	CATG	1 cut(s)	157
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	201, 335
FokI	GGATG	3 cut(s)	93, 170, 371
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	201, 335
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	201, 335
GsuI	CTGGAG	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	2 cut(s)	116, 144
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	135, 504
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	9 cut(s)	180, 203, 256, 293, 337, 346, 447, 460, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 299, 343
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	211, 247
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	84, 228, 367, 446
Lsp1109I	GCAGC	2 cut(s)	187, 321
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	213, 249
MboI	GATC	2 cut(s)	211, 247
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	175, 309
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	28, 41, 349, 370, 475
MseI	TTAA	3 cut(s)	312, 470, 526
MslI	CAYNNNNRTG	2 cut(s)	370, 396
MwoI	GCNNNNNNNGC	3 cut(s)	48, 299, 343
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	211, 247
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	116, 144
PkrI	GCNGC	2 cut(s)	202, 336
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	2 cut(s)	370, 396
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	312, 470, 526
SatI	GCNGC	2 cut(s)	201, 335
Sau3AI	GATC	2 cut(s)	211, 247
Sau96I	GGNCC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	9 cut(s)	80, 92, 100, 202, 318, 344, 465, 486, 515
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	370, 396
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	2 cut(s)	175, 309
SsiI	CCGC	2 cut(s)	51, 466
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	101, 153
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	175, 309
TfiI	GAWTC	2 cut(s)	116, 144
Tru1I	TTAA	3 cut(s)	312, 470, 526
Tru9I	TTAA	3 cut(s)	312, 470, 526
TseI	GCWGC	2 cut(s)	200, 334
TspDTI	ATGAA	1 cut(s)	521
TspGWI	ACGGA	2 cut(s)	99, 446
VpaK11BI	GGWCC	1 cut(s)	362
XspI	CTAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.