Rh4BG118000

exonuclease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
19814729 .. 19818918
4190 bp
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UTR
Exon/CDS
Intron
Rh4BG118000.1

Sequence Viewer

Length: 366 bp
ATGCAATGGGTATTCCCTAAGAAACTGCAGACTTTATTCCTTAATGCAATGGATAATGAAGCAAGGGGATTCATTGATCAGAGGGTTGAAGTAGCGAGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAGGCTCTTGAGAAGTACTTTCATGTGGACTCAAGAACCTGATATGAATGCTTTATCAGTTTTGAAATTGCAGAAGGACAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGATGGAACTGATGAATTAAATACTTATCTACACAAGTATCGCATAGAGTTGGATCAACATCTTGGTGCTCTTGTGGCGAGGTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

14.19

Weight (kDa)

6.28

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 119, 148
AgsI TTSAA 2 cut(s) 89, 196
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw21I GWGCWC 1 cut(s) 346
AlwI GGATC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 251, 254
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 241, 263
BccI CCATC 1 cut(s) 272
BclI TGATCA 1 cut(s) 76
BfmI CTRYAG 2 cut(s) 26, 255
BglII AGATCT 1 cut(s) 236
BisI GCNGC 2 cut(s) 252, 255
BlsI GCNGC 2 cut(s) 253, 256
BmcAI AGTACT 2 cut(s) 119, 148
BpuEI CTTGAG 4 cut(s) 142, 147, 160, 258
BsaBI GATNNNNATC 1 cut(s) 333
Bse3DI GCAATG 2 cut(s) 11, 54
Bse8I GATNNNNATC 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 333
BseMI GCAATG 2 cut(s) 11, 54
BseXI GCAGC 2 cut(s) 241, 263
BsiHKAI GWGCWC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 76, 236, 328
BspMAI CTGCAG 2 cut(s) 30, 259
BspPI GGATC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 11, 54
BssMI GATC 3 cut(s) 76, 236, 328
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 3 cut(s) 79, 239, 331
BstMBI GATC 3 cut(s) 76, 236, 328
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 2 cut(s) 26, 255
BstV1I GCAGC 2 cut(s) 241, 263
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 118, 147
CviAII CATG 2 cut(s) 154, 269
CviJI RGCY 2 cut(s) 136, 254
CviKI_1 RGCY 2 cut(s) 136, 254
CviQI GTAC 2 cut(s) 118, 147
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 78, 238, 330
DpnII GATC 3 cut(s) 76, 236, 328
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 2 cut(s) 157, 272
FaiI YATR 4 cut(s) 155, 176, 270, 320
FatI CATG 2 cut(s) 153, 268
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 252, 255
Fsp4HI GCNGC 2 cut(s) 252, 255
GluI GCNGC 2 cut(s) 252, 255
Hin1II CATG 2 cut(s) 157, 272
HinfI GANTC 2 cut(s) 69, 160
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 81, 245
Hpy188III TCNNGA 3 cut(s) 139, 164, 275
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 4, 28, 47, 202, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 157, 272
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 236, 328
LpnPI CCDG 4 cut(s) 183, 234, 247, 278
Lsp1109I GCAGC 2 cut(s) 241, 263
MalI GATC 3 cut(s) 78, 238, 330
MboI GATC 3 cut(s) 76, 236, 328
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 2 cut(s) 197, 290
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 3 cut(s) 75, 126, 348
MseI TTAA 2 cut(s) 42, 293
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 3 cut(s) 76, 236, 328
NlaIII CATG 2 cut(s) 157, 272
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 253, 256
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PstI CTGCAG 2 cut(s) 30, 259
PsuI RGATCY 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 119, 148
RsaNI GTAC 2 cut(s) 118, 147
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 2 cut(s) 42, 293
SatI GCNGC 2 cut(s) 252, 255
Sau3AI GATC 3 cut(s) 76, 236, 328
ScaI AGTACT 2 cut(s) 119, 148
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 346
SetI ASST 3 cut(s) 172, 256, 359
SfcI CTRYAG 2 cut(s) 26, 255
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 4 cut(s) 121, 139, 162, 273
SmoI CTYRAG 4 cut(s) 121, 139, 162, 273
SphI GCATGC 1 cut(s) 272
Sse9I AATT 2 cut(s) 197, 290
TasI AATT 2 cut(s) 197, 290
TatI WGTACW 2 cut(s) 117, 146
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 42, 293
Tru9I TTAA 2 cut(s) 42, 293
TseI GCWGC 2 cut(s) 251, 254
TspDTI ATGAA 5 cut(s) 61, 72, 142, 191, 303
XceI RCATGY 1 cut(s) 272
ZrmI AGTACT 2 cut(s) 119, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.