Rw7G037690

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001640
Physical Location & Seq
Reverse (-)
57132447 .. 57141684
9238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037690.1

Sequence Viewer

Length: 894 bp
ATGTCGTCGTCGATTGGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACTTTGAATTCCCGAGCTCCAAGGCATCCGTTCGATTGGGCTAAATGGAGTCGGATATGTAGATTATTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGCATTTGCATACAGAAGCATACTTGAATAGTCTAAAGGAAAGTGCAGATGTGGCTATGATAATTAACGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGTTTTATCATTGTTGTGGGGGAAAAGGAGGTGGATTATGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGGTGATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACAATTACTTAAATGCTATTTTTTTTATAACATGTCAAGTCTATGTCCTAGATATGTACAACCCTGGAATATATCCATTTATAAATTTTAAACCTCATCATCATGCAATGGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGGTGAGCCGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGTTTTGCTCCTGAGTTGATGGTCTACAATGCTGGAACTGATATTCTACATGGCGATCCTCTGGGCAGTGCGTTTTCTGATGATGGGGCCCACAAATTGAAAGTCACCAAAAAAGTGATAGTGCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

297

Amino Acids

33.07

Weight (kDa)

5.98

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 35 - 278 8.7e-22 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 593, 647
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 786
AciI CCGC 1 cut(s) 710
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 2 cut(s) 85, 649
AfaI GTAC 3 cut(s) 285, 623, 740
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 4 cut(s) 85, 241, 704, 862
AjnI CCWGG 2 cut(s) 351, 628
AluBI AGCT 5 cut(s) 75, 95, 197, 381, 757
AluI AGCT 5 cut(s) 75, 95, 197, 381, 757
Alw21I GWGCWC 1 cut(s) 97
AlwI GGATC 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 401, 541, 849
ApaI GGGCCC 1 cut(s) 853
ApeKI GCWGC 4 cut(s) 53, 197, 319, 373
ApoI RAATTY 2 cut(s) 85, 649
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
AseI ATTAAT 1 cut(s) 516
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 401, 849, 850
AsuHPI GGTGA 3 cut(s) 517, 724, 859
AvaI CYCGRG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 543
BanII GRGCYC 2 cut(s) 97, 853
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 4 cut(s) 65, 184, 331, 360
BccI CCATC 5 cut(s) 373, 392, 412, 775, 839
BceAI ACGGC 2 cut(s) 41, 702
BciT130I CCWGG 2 cut(s) 353, 630
BclI TGATCA 1 cut(s) 691
BfaI CTAG 1 cut(s) 614
BfuAI ACCTGC 1 cut(s) 490
BglII AGATCT 1 cut(s) 208
BisI GCNGC 4 cut(s) 54, 198, 320, 374
BlsI GCNGC 4 cut(s) 55, 199, 321, 375
BmcAI AGTACT 1 cut(s) 740
Bme1390I CCNGG 2 cut(s) 353, 630
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 401, 849, 850
BmiI GGNNCC 3 cut(s) 363, 850, 851
BmrFI CCNGG 2 cut(s) 353, 630
BmsI GCATC 2 cut(s) 112, 514
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 763, 781
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 4 cut(s) 98, 150, 628, 718
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 2 cut(s) 353, 630
BseDI CCNNGG 4 cut(s) 98, 150, 628, 718
BseGI GGATG 3 cut(s) 103, 160, 403
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 2 cut(s) 346, 765
BseNI ACTGG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 4 cut(s) 65, 184, 331, 360
BsgI GTGCAG 3 cut(s) 279, 338, 518
BshFI GGCC 3 cut(s) 403, 543, 851
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 358
BsnI GGCC 3 cut(s) 403, 543, 851
BsoBI CYCGRG 1 cut(s) 90
Bsp120I GGGCCC 1 cut(s) 849
Bsp1286I GDGCHC 2 cut(s) 97, 853
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 3 cut(s) 208, 691, 817
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 710
BspANI GGCC 3 cut(s) 403, 543, 851
BspCNI CTCAG 2 cut(s) 345, 766
BspLI GGNNCC 3 cut(s) 363, 850, 851
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 678
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 98, 150, 628, 718
BssMI GATC 3 cut(s) 208, 691, 817
BssT1I CCWWGG 2 cut(s) 98, 150
Bst2UI CCWGG 2 cut(s) 353, 630
BstAPI GCANNNNNTGC 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 621
BstC8I GCNNGC 2 cut(s) 73, 383
BstDEI CTNAG 2 cut(s) 332, 774
BstDSI CCRYGG 2 cut(s) 150, 718
BstF5I GGATG 3 cut(s) 103, 160, 403
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 211, 694, 820
BstMBI GATC 3 cut(s) 208, 691, 817
BstMWI GCNNNNNNNGC 3 cut(s) 48, 266, 382
BstNI CCWGG 2 cut(s) 353, 630
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 351, 628
BstSLI GKGCMC 1 cut(s) 853
BstV1I GCAGC 4 cut(s) 65, 184, 331, 360
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 3 cut(s) 403, 543, 851
BtgI CCRYGG 2 cut(s) 150, 718
BtsCI GGATG 3 cut(s) 103, 160, 403
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 1 cut(s) 835
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 73, 383
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 401, 849, 850
CsiI ACCWGGT 1 cut(s) 351
Csp6I GTAC 3 cut(s) 284, 622, 739
CviAII CATG 5 cut(s) 151, 545, 597, 668, 812
CviQI GTAC 3 cut(s) 284, 622, 739
DdeI CTNAG 2 cut(s) 332, 774
DpnI GATC 3 cut(s) 210, 693, 819
DpnII GATC 3 cut(s) 208, 691, 817
DraI TTTAAA 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 541
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 98, 150
Eco24I GRGCYC 2 cut(s) 97, 853
Eco53kI GAGCTC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 849
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 351, 628
EcoT14I CCWWGG 2 cut(s) 98, 150
EcoT38I GRGCYC 2 cut(s) 97, 853
ErhI CCWWGG 2 cut(s) 98, 150
FaeI CATG 5 cut(s) 154, 548, 600, 671, 815
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 5 cut(s) 150, 544, 596, 667, 811
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 4 cut(s) 54, 198, 320, 374
FokI GGATG 3 cut(s) 90, 167, 410
FriOI GRGCYC 2 cut(s) 97, 853
Fsp4HI GCNGC 4 cut(s) 54, 198, 320, 374
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 54, 198, 320, 374
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 3 cut(s) 403, 543, 851
HhaI GCGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 154, 548, 600, 671, 815
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 2 cut(s) 127, 684
HphI GGTGA 3 cut(s) 517, 724, 859
Hpy166II GTNNAC 2 cut(s) 166, 787
Hpy188I TCNGA 3 cut(s) 132, 696, 841
Hpy188III TCNNGA 4 cut(s) 90, 521, 760, 773
Hpy8I GTNNAC 2 cut(s) 166, 787
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 266, 382
HpyF3I CTNAG 2 cut(s) 332, 774
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 5 cut(s) 154, 548, 600, 671, 815
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 3 cut(s) 208, 691, 817
LmnI GCTCC 2 cut(s) 100, 775
Lsp1109I GCAGC 4 cut(s) 65, 184, 331, 360
LweI GCATC 2 cut(s) 112, 514
MabI ACCWGGT 1 cut(s) 351
MaeI CTAG 1 cut(s) 614
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 865
MalI GATC 3 cut(s) 210, 693, 819
MboI GATC 3 cut(s) 208, 691, 817
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 97, 853
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 7 cut(s) 85, 172, 276, 307, 568, 649, 857
MluNI TGGCCA 1 cut(s) 543
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 110
Mox20I TGGCCA 1 cut(s) 543
MscI TGGCCA 1 cut(s) 543
MseI TTAA 4 cut(s) 279, 516, 575, 654
MslI CAYNNNNRTG 3 cut(s) 409, 435, 666
Msp20I TGGCCA 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 353, 630
MvaI CCWGG 2 cut(s) 353, 630
MwoI GCNNNNNNNGC 3 cut(s) 48, 266, 382
NcoI CCATGG 1 cut(s) 150
NdeII GATC 3 cut(s) 208, 691, 817
NlaIII CATG 5 cut(s) 154, 548, 600, 671, 815
NlaIV GGNNCC 3 cut(s) 363, 850, 851
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 490
PciI ACATGT 1 cut(s) 596
PfeI GAWTC 1 cut(s) 684
PkrI GCNGC 4 cut(s) 55, 199, 321, 375
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PscI ACATGT 1 cut(s) 596
PshBI ATTAAT 1 cut(s) 516
PsiI TTATAA 2 cut(s) 593, 647
Psp124BI GAGCTC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 351, 628
PspGI CCWGG 2 cut(s) 351, 628
PspN4I GGNNCC 3 cut(s) 363, 850, 851
PspOMI GGGCCC 1 cut(s) 849
PspPI GGNCC 3 cut(s) 401, 849, 850
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 3 cut(s) 285, 623, 740
RsaNI GTAC 3 cut(s) 284, 622, 739
RseI CAYNNNNRTG 3 cut(s) 409, 435, 666
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 4 cut(s) 279, 516, 575, 654
SatI GCNGC 4 cut(s) 54, 198, 320, 374
Sau3AI GATC 3 cut(s) 208, 691, 817
Sau96I GGNCC 3 cut(s) 401, 849, 850
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 353, 630
SduI GDGCHC 2 cut(s) 97, 853
SexAI ACCWGGT 1 cut(s) 351
SfaNI GCATC 2 cut(s) 112, 514
SmiMI CAYNNNNRTG 3 cut(s) 409, 435, 666
SmlI CTYRAG 2 cut(s) 742, 760
SmoI CTYRAG 2 cut(s) 742, 760
Sse9I AATT 7 cut(s) 85, 172, 276, 307, 568, 649, 857
SsiI CCGC 1 cut(s) 710
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 351, 628
StyI CCWWGG 2 cut(s) 98, 150
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 11, 111
TasI AATT 7 cut(s) 85, 172, 276, 307, 568, 649, 857
TatI WGTACW 2 cut(s) 621, 738
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 4 cut(s) 279, 516, 575, 654
Tru9I TTAA 4 cut(s) 279, 516, 575, 654
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 4 cut(s) 53, 197, 319, 373
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 3 cut(s) 561, 676, 767
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 835
VspI ATTAAT 1 cut(s) 516
XapI RAATTY 2 cut(s) 85, 649
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 1 cut(s) 614
ZrmI AGTACT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.