RLG00000033108

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001640
Physical Location & Seq
Forward (+)
23376251 .. 23378977
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033108

Sequence Viewer

Length: 684 bp
ATGAGAATTTCGCCAAGTTTACATCTCGGCATTGAGAAGCTGCATCCGTTCGATTCGGCTAAATGGGGCCAGGTATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGTGAGGATGGGCCATCAATGTGGGAGGACTGGTATCATTGTTGTAGGGGAAAGGAGGTGGGTTCTGTGCTTATACTGATATTTCGCTTTGCATACATTTTCTGCAGGGTAATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAGAATTTGACAATGACAGTATGACATGCTTTTTTAGACATTGTGGTAGAGAGAAGACAAACTTTCCGTACTGTCTCCCGTTATTGCCATTTCACCACATATTTACTTCTTCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGTTGATGGTCTACAATGCTGGAACTGATATTCTACATGGCGATCCTCTGGGCAAGTTGAAGGTGTGGGATGCAACTGCAGTTGATTCTAAATTGCTGGTCTTTTTGAAATCGTACGGGAATTTCTTACACACTGAATCTGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

228

Amino Acids

26.22

Weight (kDa)

5.74

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 546
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 3 cut(s) 6, 350, 655
AfaI GTAC 3 cut(s) 416, 513, 650
AgsI TTSAA 4 cut(s) 459, 485, 595, 643
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 4 cut(s) 40, 137, 183, 530
AluI AGCT 4 cut(s) 40, 137, 183, 530
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 572
AoxI GGCC 3 cut(s) 67, 203, 337
ApeKI GCWGC 3 cut(s) 40, 137, 175
ApoI RAATTY 3 cut(s) 6, 350, 655
AseI ATTAAT 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 67, 203
AsuHPI GGTGA 1 cut(s) 431
BalI TGGCCA 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 27, 124, 162
BccI CCATC 3 cut(s) 194, 214, 535
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 425
BfmI CTRYAG 2 cut(s) 295, 612
BglII AGATCT 1 cut(s) 148
BisI GCNGC 3 cut(s) 41, 138, 176
BlsI GCNGC 3 cut(s) 42, 139, 177
BmcAI AGTACT 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 67, 203
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 52, 310, 595
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 536, 554
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bse1I ACTGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 4 cut(s) 43, 100, 205, 610
BseJI GATNNNNATC 1 cut(s) 324
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 27, 124, 162
BshFI GGCC 3 cut(s) 69, 205, 339
BsiWI CGTACG 1 cut(s) 648
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 3 cut(s) 69, 205, 339
Bsp143I GATC 3 cut(s) 148, 472, 577
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 3 cut(s) 69, 205, 339
BspLI GGNNCC 1 cut(s) 68
BspMAI CTGCAG 2 cut(s) 299, 616
BspPI GGATC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 148, 472, 577
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 365, 419
BstAPI GCANNNNNTGC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 4 cut(s) 43, 100, 205, 610
BstKTI GATC 3 cut(s) 151, 475, 580
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 148, 472, 577
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 295, 612
BstV1I GCAGC 3 cut(s) 27, 124, 162
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 3 cut(s) 69, 205, 339
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 43, 100, 205, 610
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 67, 203
Csp6I GTAC 3 cut(s) 415, 512, 649
CviAII CATG 4 cut(s) 91, 341, 372, 572
CviQI GTAC 3 cut(s) 415, 512, 649
DpnI GATC 3 cut(s) 150, 474, 579
DpnII GATC 3 cut(s) 148, 472, 577
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 94, 344, 375, 575
FaiI YATR 9 cut(s) 76, 92, 266, 286, 342, 368, 373, 446, 573
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 4 cut(s) 90, 340, 371, 571
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 41, 138, 176
FokI GGATG 4 cut(s) 30, 107, 212, 617
Fsp4HI GCNGC 3 cut(s) 41, 138, 176
GluI GCNGC 3 cut(s) 41, 138, 176
HaeIII GGCC 3 cut(s) 69, 205, 339
Hin1II CATG 4 cut(s) 94, 344, 375, 575
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 5 cut(s) 53, 81, 465, 620, 671
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 20, 106, 547
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 2 cut(s) 317, 533
Hpy8I GTNNAC 3 cut(s) 20, 106, 547
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 2 cut(s) 365, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
Hsp92II CATG 4 cut(s) 94, 344, 375, 575
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 148, 472, 577
LpnPI CCDG 8 cut(s) 56, 83, 208, 283, 540, 569, 617, 660
Lsp1109I GCAGC 3 cut(s) 27, 124, 162
LweI GCATC 3 cut(s) 52, 310, 595
MalI GATC 3 cut(s) 150, 474, 579
MboI GATC 3 cut(s) 148, 472, 577
MboII GAAGA 3 cut(s) 158, 412, 447
MflI RGATCY 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 6 cut(s) 6, 112, 350, 626, 655, 679
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 5 cut(s) 190, 211, 241, 471, 591
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 184
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 148, 472, 577
NlaIII CATG 4 cut(s) 94, 344, 375, 575
NlaIV GGNNCC 1 cut(s) 68
NmeAIII GCCGAG 1 cut(s) 6
NspI RCATGY 1 cut(s) 375
PfeI GAWTC 5 cut(s) 53, 81, 465, 620, 671
Pfl23II CGTACG 1 cut(s) 648
PkrI GCNGC 3 cut(s) 42, 139, 177
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspLI CGTACG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 67, 203
PstI CTGCAG 2 cut(s) 299, 616
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 3 cut(s) 416, 513, 650
RsaNI GTAC 3 cut(s) 415, 512, 649
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 41, 138, 176
Sau3AI GATC 3 cut(s) 148, 472, 577
Sau96I GGNCC 2 cut(s) 67, 203
ScaI AGTACT 1 cut(s) 513
ScrFI CCNGG 1 cut(s) 71
SetI ASST 7 cut(s) 42, 75, 139, 185, 252, 532, 600
SfaNI GCATC 3 cut(s) 52, 310, 595
SfcI CTRYAG 2 cut(s) 295, 612
SmiMI CAYNNNNRTG 1 cut(s) 211
SmlI CTYRAG 2 cut(s) 515, 533
SmoI CTYRAG 2 cut(s) 515, 533
Sse9I AATT 6 cut(s) 6, 112, 350, 626, 655, 679
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 365, 419
TaqI TCGA 1 cut(s) 51
TasI AATT 6 cut(s) 6, 112, 350, 626, 655, 679
TatI WGTACW 1 cut(s) 511
TfiI GAWTC 5 cut(s) 53, 81, 465, 620, 671
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 673
TseI GCWGC 3 cut(s) 40, 137, 175
TspDTI ATGAA 3 cut(s) 357, 457, 540
TspGWI ACGGA 2 cut(s) 36, 402
TspRI CASTG 1 cut(s) 673
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 3 cut(s) 6, 350, 655
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.