RchiOBHm_Chr5g0028711

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001640
Physical Location & Seq
Forward (+)
22527858 .. 22530355
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30812

Sequence Viewer

Length: 786 bp
ATGGCGGAAGAGGGGGATGAGATTGGGGTTGGTTTAGGGTTAAGGTACAGAGGCGTTGGCGGAGAGAGAGAGACGGAGCTTGGGGATGGGATTGGGAGTGGGATCGAGCTTGAGGAAGGGACATGGAGCGAAGAAGCATTTGAATTTGGGGGTTGGGGACTCAATTATCTCCTTCATCTCTTTCTCAAATTTCGATTTCCCCTAATCAGCGGAGGAGGAGAATTTGATGATAAAGGAGCCCAGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACTTTGATGTCCCGAGCTTCAAGGCATCCGTTCGATTCGGCTAAATGGGATCGGGTATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTACAAAGGAAGATCTTGTGGTACCTCATGTTGCCCTGTTTCCAAATTGCCTTGTGCAACAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGCAATTCGTCATCCATCTTACATTTTTTTTTTAGTGCTTTCTTCTACTAAAAAGGGAAGAAAAGAGAACAAGGATTTACTGTGCTTGTATTATACTGCAGGTGGGGGAACTATCTTGGCTACAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGGTTTTATAATTGTTGATTATGAAGCAAGGAGATTTATTGATCAGAGGGTTGAAGTAGCGGTGAGCCGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGGTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

261

Amino Acids

28.95

Weight (kDa)

6.54

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AarI CACCTGC 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 584
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AciI CCGC 4 cut(s) 5, 60, 210, 722
AclWI GGATC 2 cut(s) 110, 342
AcsI RAATTY 3 cut(s) 143, 188, 221
AfaI GTAC 3 cut(s) 47, 426, 752
AgsI TTSAA 4 cut(s) 143, 306, 716, 781
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 7 cut(s) 79, 109, 282, 302, 404, 622, 769
AluI AGCT 7 cut(s) 79, 109, 282, 302, 404, 622, 769
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 110, 342
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 143, 188, 221
Asp718I GGTACC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 297
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 272
BccI CCATC 4 cut(s) 80, 517, 633, 653
BceAI ACGGC 2 cut(s) 248, 714
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 584
BglII AGATCT 1 cut(s) 415
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 2 cut(s) 238, 426
BmrFI CCNGG 1 cut(s) 494
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 131, 775
BsaJI CCNNGG 2 cut(s) 357, 730
Bse1I ACTGG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 2 cut(s) 357, 730
BseGI GGATG 6 cut(s) 22, 91, 310, 367, 505, 644
BseMII CTCAG 2 cut(s) 267, 487
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 228, 231
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 644
BshNI GGYRCC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 297
BslFI GGGAC 3 cut(s) 133, 171, 280
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 3 cut(s) 133, 171, 280
BsnI GGCC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 102, 334, 415, 703
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 4 cut(s) 5, 60, 210, 722
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 2 cut(s) 266, 486
BspLI GGNNCC 2 cut(s) 238, 426
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 2 cut(s) 110, 342
BspT107I GGYRCC 1 cut(s) 424
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 357, 730
BssMI GATC 4 cut(s) 102, 334, 415, 703
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 576
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 280, 624
BstDEI CTNAG 2 cut(s) 253, 473
BstDSI CCRYGG 2 cut(s) 357, 730
BstF5I GGATG 6 cut(s) 22, 91, 310, 367, 505, 644
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 4 cut(s) 105, 337, 418, 706
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 102, 334, 415, 703
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 2 cut(s) 357, 730
BtsCI GGATG 6 cut(s) 22, 91, 310, 367, 505, 644
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 280, 624
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 3 cut(s) 46, 425, 751
CviAII CATG 3 cut(s) 123, 358, 431
CviQI GTAC 3 cut(s) 46, 425, 751
DdeI CTNAG 2 cut(s) 253, 473
DpnI GATC 4 cut(s) 104, 336, 417, 705
DpnII GATC 4 cut(s) 102, 334, 415, 703
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 2 cut(s) 20, 75
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 3 cut(s) 126, 361, 434
FaiI YATR 7 cut(s) 124, 343, 359, 432, 588, 671, 684
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 3 cut(s) 133, 171, 280
FatI CATG 3 cut(s) 122, 357, 430
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 6 cut(s) 29, 98, 297, 374, 492, 651
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 261
GlaI GCGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 644
HhaI GCGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 126, 361, 434
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 3 cut(s) 159, 320, 348
HphI GGTGA 1 cut(s) 736
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 708
Hpy188III TCNNGA 2 cut(s) 297, 772
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 110, 182
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4V TGCA 4 cut(s) 384, 460, 593, 626
HpyF3I CTNAG 2 cut(s) 253, 473
Hsp92II CATG 3 cut(s) 126, 361, 434
HspAI GCGC 1 cut(s) 258
KpnI GGTACC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 4 cut(s) 102, 334, 415, 703
LmnI GCTCC 3 cut(s) 76, 126, 236
LpnPI CCDG 8 cut(s) 240, 254, 288, 452, 479, 506, 579, 647
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 319
MalI GATC 4 cut(s) 104, 336, 417, 705
MboI GATC 4 cut(s) 102, 334, 415, 703
MboII GAAGA 5 cut(s) 20, 143, 425, 528, 564
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 8 cut(s) 143, 163, 188, 221, 379, 448, 498, 672
MlyI GAGTC 1 cut(s) 153
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 357
NdeII GATC 4 cut(s) 102, 334, 415, 703
NlaIII CATG 3 cut(s) 126, 361, 434
NlaIV GGNNCC 2 cut(s) 238, 426
PaqCI CACCTGC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 320, 348
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PsiI TTATAA 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 492
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 238, 426
PspPI GGNCC 1 cut(s) 642
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 3 cut(s) 47, 426, 752
RsaNI GTAC 3 cut(s) 46, 425, 751
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 102, 334, 415, 703
Sau96I GGNCC 1 cut(s) 642
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 3 cut(s) 110, 754, 772
SmoI CTYRAG 3 cut(s) 110, 754, 772
Sse9I AATT 8 cut(s) 143, 163, 188, 221, 379, 448, 498, 672
SsiI CCGC 4 cut(s) 5, 60, 210, 722
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 576
TaqI TCGA 3 cut(s) 105, 193, 318
TasI AATT 8 cut(s) 143, 163, 188, 221, 379, 448, 498, 672
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 2 cut(s) 320, 348
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 164, 699, 779
TspGWI ACGGA 2 cut(s) 89, 303
XapI RAATTY 3 cut(s) 143, 188, 221
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.