Rroxscaffold_1G00020030

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001640
Physical Location & Seq
Forward (+)
24430743 .. 24432590
1848 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00020030.1

Sequence Viewer

Length: 438 bp
ATGGGGTGGGGTCGAGTATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTGCGGTTAAACATACTTAAGGTGATGATTATTATTCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACGAGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGAAGTACTTCCATGTGGACTCAAGAACCCGATATGAATGTTGGGTTGCTGCTCATAATTTTGCTCCCGAGTTGATGGTCTACAATGCTGGAATTGATATTCTACATGGCGATCCTCTCGGGCAGGTTGAAGTCATCCATGGAGGAGAAGAGGAAATTGCATATATGATGCCTAGAATTAAGGCTGCCAATTATCTTTTCACGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

145

Amino Acids

16.72

Weight (kDa)

5.06

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 157
AdeI CACNNNGTG 1 cut(s) 435
AfaI GTAC 2 cut(s) 207, 236
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 359
AjuI GAANNNNNNNTTGG 1 cut(s) 410
AluBI AGCT 2 cut(s) 80, 224
AluI AGCT 2 cut(s) 80, 224
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 2 cut(s) 296, 347
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 80, 278, 413
Asp700I GAANNNNTTC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 2 cut(s) 296, 347
BalI TGGCCA 1 cut(s) 159
BbvI GCAGC 3 cut(s) 67, 265, 400
BccI CCATC 1 cut(s) 298
BfaI CTAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 343
BglII AGATCT 1 cut(s) 91
BisI GCNGC 3 cut(s) 81, 279, 414
BlsI GCNGC 3 cut(s) 82, 280, 415
BmcAI AGTACT 2 cut(s) 207, 236
BmeT110I CYCGRG 2 cut(s) 296, 347
BmsI GCATC 2 cut(s) 130, 387
BpuEI CTTGAG 3 cut(s) 230, 235, 248
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 33, 367
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 33, 367
BseGI GGATG 2 cut(s) 43, 363
BseJI GATNNNNATC 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 67, 265, 400
BshFI GGCC 1 cut(s) 159
BsiHKCI CYCGRG 2 cut(s) 296, 347
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 2 cut(s) 296, 347
Bsp143I GATC 2 cut(s) 91, 340
Bsp19I CCATGG 2 cut(s) 33, 367
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 33, 367
BssMI GATC 2 cut(s) 91, 340
BssT1I CCWWGG 2 cut(s) 33, 367
Bst6I CTCTTC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 116
BstDSI CCRYGG 2 cut(s) 33, 367
BstF5I GGATG 2 cut(s) 43, 363
BstKTI GATC 2 cut(s) 94, 343
BstMBI GATC 2 cut(s) 91, 340
BstV1I GCAGC 3 cut(s) 67, 265, 400
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 2 cut(s) 33, 367
BtsCI GGATG 2 cut(s) 43, 363
BveI ACCTGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 206, 235
CviAII CATG 5 cut(s) 34, 161, 242, 335, 368
CviJI RGCY 5 cut(s) 70, 80, 159, 224, 413
CviKI_1 RGCY 5 cut(s) 70, 80, 159, 224, 413
CviQI GTAC 2 cut(s) 206, 235
DpnI GATC 2 cut(s) 93, 342
DpnII GATC 2 cut(s) 91, 340
DraIII CACNNNGTG 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 33, 367
Eco88I CYCGRG 2 cut(s) 296, 347
EcoT14I CCWWGG 2 cut(s) 33, 367
ErhI CCWWGG 2 cut(s) 33, 367
FaeI CATG 5 cut(s) 37, 164, 245, 338, 371
FatI CATG 5 cut(s) 33, 160, 241, 334, 367
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 81, 279, 414
FokI GGATG 2 cut(s) 50, 350
Fsp4HI GCNGC 3 cut(s) 81, 279, 414
FspBI CTAG 1 cut(s) 402
GluI GCNGC 3 cut(s) 81, 279, 414
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 5 cut(s) 37, 164, 245, 338, 371
HinfI GANTC 2 cut(s) 24, 248
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 49, 247, 310
Hpy188III TCNNGA 5 cut(s) 137, 227, 252, 296, 430
Hpy8I GTNNAC 3 cut(s) 49, 247, 310
HpyCH4V TGCA 4 cut(s) 60, 83, 143, 389
Hsp92II CATG 5 cut(s) 37, 164, 245, 338, 371
Kzo9I GATC 2 cut(s) 91, 340
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 2 cut(s) 303, 338
Lsp1109I GCAGC 3 cut(s) 67, 265, 400
LweI GCATC 2 cut(s) 130, 387
MaeI CTAG 1 cut(s) 402
MalI GATC 2 cut(s) 93, 342
MboI GATC 2 cut(s) 91, 340
MboII GAAGA 2 cut(s) 101, 389
MflI RGATCY 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 6 cut(s) 55, 286, 321, 384, 405, 418
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 3 cut(s) 354, 365, 373
Mox20I TGGCCA 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 159
MseI TTAA 3 cut(s) 107, 117, 408
Msp20I TGGCCA 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 116
NcoI CCATGG 2 cut(s) 33, 367
NdeII GATC 2 cut(s) 91, 340
NlaIII CATG 5 cut(s) 37, 164, 245, 338, 371
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 3 cut(s) 82, 280, 415
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 207, 236
RsaNI GTAC 2 cut(s) 206, 235
SaqAI TTAA 3 cut(s) 107, 117, 408
SatI GCNGC 3 cut(s) 81, 279, 414
Sau3AI GATC 2 cut(s) 91, 340
ScaI AGTACT 2 cut(s) 207, 236
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 82, 123, 226, 357
SfaNI GCATC 2 cut(s) 130, 387
SmlI CTYRAG 4 cut(s) 116, 209, 227, 250
SmoI CTYRAG 4 cut(s) 116, 209, 227, 250
Sse9I AATT 6 cut(s) 55, 286, 321, 384, 405, 418
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 33, 367
TaqI TCGA 1 cut(s) 13
TasI AATT 6 cut(s) 55, 286, 321, 384, 405, 418
TatI WGTACW 2 cut(s) 205, 234
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 3 cut(s) 107, 117, 408
Tru9I TTAA 3 cut(s) 107, 117, 408
TseI GCWGC 3 cut(s) 80, 278, 413
TspDTI ATGAA 3 cut(s) 177, 234, 279
Vha464I CTTAAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 2 cut(s) 207, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.