Rh6AG496700

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001640
Physical Location & Seq
Reverse (-)
67288958 .. 67291689
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG496700.1

Sequence Viewer

Length: 1053 bp
ATGTCGTTTGCTGCTCCACCGAAAAACGACAGCGAATCTCTCAGACGCAGCCGTATTCTCTCCAGCAAGCTCTACCTCGACGTCCCGAGCTCCAAGGTGCCGTTGATTTACTCTTCGACGTATGATATCGCATTTCTCGGCATTGAGAAGCTGCACCCGTTCGATTCGGCTAAATGGGGTCGGATATGTAGATTCCTGTCCATGGATGATGTTGTGGACAAAAATTGCATTGTAGAGCCAAAGGAAGCTACAAAGGAGGATCTTCTTGTGGTGCATACAGAAGCATACTTGAACAGTCTAAAGAAAAGTGCAGATGTTGCTATGATAATTGAGGTACCTCCTGTTGCCCTATTTCCGAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCATTTCGCAACCAGGTGGGGGGAACTATCTTGGCTGCCAAGCTTGCAAAAGAACGAGGATGGGCCATCAATGTGGGAGGAGGGTTTCATCATTGTTGTGGGGGAAAAGGAGGTGGATTCTGTGCTTATGCTGATATTTCTCTTTGCATACATTTTGCCTTTGTGCGGTTAAACATATCAAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACAGTCGAGTCTATATCCTGGATATGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGTGAGTGGCACTACAACAGCCGAGTACTTGAGAAAGTTAGATGCAGCTCTTGAGGTTGCTGCTCATAATTTTGCTCCTGAGTTGATAGTCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTCTGGGCAGGTTGAAGATCAGTCCTGATGGGATAACTCATAGGGATGAGAAAGTCTTCAGGTTTGCTTTCGAGAGGAATATTCCCATTACCTTCTATGTCTCAGGTGGTTACATGAAGTCTAGTGCAAGAGTTATCGCAGACTCGATAGCCAATCTCTCAAACAAATCCCTGATTGATATGGGGAGAAAGACTTCTTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

350

Amino Acids

38.77

Weight (kDa)

6.76

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 52 - 331 2.2e-55 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 846
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 2 cut(s) 97, 334
AccI GTMKAC 1 cut(s) 813
AciI CCGC 1 cut(s) 553
AclWI GGATC 2 cut(s) 267, 839
AcoI YGGCCR 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 889
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 336, 659, 749
AfiI CCNNNNNNNGG 3 cut(s) 202, 406, 552
AgsI TTSAA 3 cut(s) 292, 719, 862
AjnI CCWGG 3 cut(s) 399, 648, 664
AluBI AGCT 6 cut(s) 70, 90, 151, 248, 430, 770
AluI AGCT 6 cut(s) 70, 90, 151, 248, 430, 770
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 952
AlwI GGATC 2 cut(s) 267, 839
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 450, 607
ApeKI GCWGC 7 cut(s) 11, 48, 151, 370, 422, 767, 782
Asp700I GAANNNNTTC 2 cut(s) 902, 1039
Asp718I GGTACC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 85
BalI TGGCCA 1 cut(s) 609
BanI GGYRCC 2 cut(s) 97, 334
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 895
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 6 cut(s) 60, 138, 382, 409, 769, 779
BccI CCATC 4 cut(s) 441, 461, 833, 869
BceAI ACGGC 2 cut(s) 36, 85
BciT130I CCWGG 3 cut(s) 401, 650, 666
BclI TGATCA 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 952
BfaI CTAG 2 cut(s) 836, 969
BfuAI ACCTGC 1 cut(s) 846
BisI GCNGC 7 cut(s) 12, 49, 152, 371, 423, 768, 783
BlsI GCNGC 7 cut(s) 13, 50, 153, 372, 424, 769, 784
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 3 cut(s) 401, 650, 666
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 99, 336
BmrFI CCNGG 3 cut(s) 401, 650, 666
BmsI GCATC 2 cut(s) 580, 754
BpiI GAAGAC 1 cut(s) 895
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 2 cut(s) 772, 794
BsaBI GATNNNNATC 2 cut(s) 594, 843
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 93, 201, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 406, 552
Bse8I GATNNNNATC 2 cut(s) 594, 843
BseBI CCWGG 3 cut(s) 401, 650, 666
BseDI CCNNGG 3 cut(s) 93, 201, 664
BseGI GGATG 3 cut(s) 211, 452, 898
BseJI GATNNNNATC 2 cut(s) 594, 843
BseLI CCNNNNNNNGG 3 cut(s) 202, 406, 552
BseMII CTCAG 4 cut(s) 55, 397, 792, 963
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 6 cut(s) 60, 138, 382, 409, 769, 779
BsgI GTGCAG 3 cut(s) 137, 330, 389
BshFI GGCC 2 cut(s) 452, 609
BshNI GGYRCC 2 cut(s) 97, 334
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 202, 406, 552
BsmAI GTCTC 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 2 cut(s) 452, 609
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 5 cut(s) 259, 583, 706, 844, 864
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 553
BspANI GGCC 2 cut(s) 452, 609
BspCNI CTCAG 4 cut(s) 54, 396, 793, 962
BspLI GGNNCC 2 cut(s) 99, 336
BspMI ACCTGC 1 cut(s) 846
BspPI GGATC 2 cut(s) 267, 839
BspT107I GGYRCC 2 cut(s) 97, 334
BsrGI TGTACA 1 cut(s) 657
BssECI CCNNGG 3 cut(s) 93, 201, 664
BssMI GATC 5 cut(s) 259, 583, 706, 844, 864
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 93, 201
Bst2UI CCWGG 3 cut(s) 401, 650, 666
Bst4CI ACNGT 2 cut(s) 296, 635
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 68, 432
BstDEI CTNAG 4 cut(s) 41, 383, 801, 949
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 3 cut(s) 211, 452, 898
BstKTI GATC 5 cut(s) 262, 586, 709, 847, 867
BstMAI GTCTC 1 cut(s) 952
BstMBI GATC 5 cut(s) 259, 583, 706, 844, 864
BstMWI GCNNNNNNNGC 2 cut(s) 317, 431
BstNI CCWGG 3 cut(s) 401, 650, 666
BstSCI CCNGG 3 cut(s) 399, 648, 664
BstV1I GCAGC 6 cut(s) 60, 138, 382, 409, 769, 779
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 452, 609
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 3 cut(s) 211, 452, 898
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 2 cut(s) 68, 432
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 3 cut(s) 335, 658, 748
CviAII CATG 3 cut(s) 202, 611, 961
CviQI GTAC 3 cut(s) 335, 658, 748
DdeI CTNAG 4 cut(s) 41, 383, 801, 949
DpnI GATC 5 cut(s) 261, 585, 708, 846, 866
DpnII GATC 5 cut(s) 259, 583, 706, 844, 864
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 93, 201
Eco24I GRGCYC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 90
EcoRII CCWGG 3 cut(s) 399, 648, 664
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 2 cut(s) 93, 201
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 93, 201
FaeI CATG 3 cut(s) 205, 614, 964
FaqI GGGAC 1 cut(s) 68
FatI CATG 3 cut(s) 201, 610, 960
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 7 cut(s) 12, 49, 152, 371, 423, 768, 783
FokI GGATG 3 cut(s) 218, 459, 905
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 7 cut(s) 12, 49, 152, 371, 423, 768, 783
FspBI CTAG 2 cut(s) 836, 969
GluI GCNGC 7 cut(s) 12, 49, 152, 371, 423, 768, 783
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 2 cut(s) 452, 609
HgaI GACGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 205, 614, 964
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 7 cut(s) 35, 164, 192, 504, 639, 699, 989
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 217, 814
Hpy188I TCNGA 4 cut(s) 44, 183, 357, 711
Hpy188III TCNNGA 7 cut(s) 85, 587, 773, 800, 836, 872, 919
Hpy8I GTNNAC 2 cut(s) 217, 814
Hpy99I CGWCG 2 cut(s) 83, 121
HpyAV CCTTC 1 cut(s) 949
HpyCH4III ACNGT 2 cut(s) 296, 635
HpyCH4IV ACGT 2 cut(s) 81, 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 431
HpyF3I CTNAG 4 cut(s) 41, 383, 801, 949
HpySE526I ACGT 2 cut(s) 81, 119
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 205, 614, 964
KpnI GGTACC 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 5 cut(s) 259, 583, 706, 844, 864
LmnI GCTCC 3 cut(s) 19, 95, 802
Lsp1109I GCAGC 6 cut(s) 60, 138, 382, 409, 769, 779
LweI GCATC 2 cut(s) 580, 754
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 2 cut(s) 836, 969
MaeII ACGT 2 cut(s) 81, 119
MaeIII GTNAC 1 cut(s) 956
MalI GATC 5 cut(s) 261, 585, 708, 846, 866
MboI GATC 5 cut(s) 259, 583, 706, 844, 864
MboII GAAGA 5 cut(s) 105, 254, 874, 895, 1035
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 4 cut(s) 223, 327, 358, 790
MluNI TGGCCA 1 cut(s) 609
MlyI GAGTC 2 cut(s) 648, 983
MmeI TCCRAC 1 cut(s) 161
Mox20I TGGCCA 1 cut(s) 609
MroXI GAANNNNTTC 2 cut(s) 902, 1039
MscI TGGCCA 1 cut(s) 609
MseI TTAA 1 cut(s) 557
MslI CAYNNNNRTG 3 cut(s) 458, 483, 891
Msp20I TGGCCA 1 cut(s) 609
MspR9I CCNGG 3 cut(s) 401, 650, 666
MvaI CCWGG 3 cut(s) 401, 650, 666
MwoI GCNNNNNNNGC 2 cut(s) 317, 431
NcoI CCATGG 1 cut(s) 201
NdeII GATC 5 cut(s) 259, 583, 706, 844, 864
NlaIII CATG 3 cut(s) 205, 614, 964
NlaIV GGNNCC 2 cut(s) 99, 336
NmeAIII GCCGAG 2 cut(s) 117, 769
PdmI GAANNNNTTC 2 cut(s) 902, 1039
PfeI GAWTC 5 cut(s) 35, 164, 192, 504, 699
PfoI TCCNGGA 1 cut(s) 648
PkrI GCNGC 7 cut(s) 13, 50, 153, 372, 424, 769, 784
PleI GAGTC 2 cut(s) 647, 983
PpsI GAGTC 2 cut(s) 647, 983
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 399, 648, 664
PspGI CCWGG 3 cut(s) 399, 648, 664
PspN4I GGNNCC 2 cut(s) 99, 336
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 3 cut(s) 336, 659, 749
RsaNI GTAC 3 cut(s) 335, 658, 748
RseI CAYNNNNRTG 3 cut(s) 458, 483, 891
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 7 cut(s) 12, 49, 152, 371, 423, 768, 783
Sau3AI GATC 5 cut(s) 259, 583, 706, 844, 864
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 2 cut(s) 648, 983
ScrFI CCNGG 3 cut(s) 401, 650, 666
SduI GDGCHC 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 2 cut(s) 580, 754
SmiMI CAYNNNNRTG 3 cut(s) 458, 483, 891
SmlI CTYRAG 2 cut(s) 751, 773
SmoI CTYRAG 2 cut(s) 751, 773
Sse9I AATT 4 cut(s) 223, 327, 358, 790
SsiI CCGC 1 cut(s) 553
SspI AATATT 1 cut(s) 928
SspMI CTAG 2 cut(s) 836, 969
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 3 cut(s) 399, 648, 664
StyI CCWWGG 2 cut(s) 93, 201
TaaI ACNGT 2 cut(s) 296, 635
TaiI ACGT 2 cut(s) 84, 122
TaqI TCGA 6 cut(s) 78, 116, 162, 637, 918, 992
TasI AATT 4 cut(s) 223, 327, 358, 790
TatI WGTACW 2 cut(s) 657, 747
TfiI GAWTC 5 cut(s) 35, 164, 192, 504, 699
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TseI GCWGC 7 cut(s) 11, 48, 151, 370, 422, 767, 782
TspDTI ATGAA 5 cut(s) 464, 627, 691, 702, 977
XbaI TCTAGA 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 2 cut(s) 902, 1039
XspI CTAG 2 cut(s) 836, 969
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.