Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003880.1

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Reverse (-)

149617 .. 151358

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003880.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgtcgtcgtcgattggtggagtggtggctgtggaggaaggcaatagaggtataaacatattcatgccattctggaatgatgtcgtttgctgctctacccaactaaacgacgccaaatctctcaggcgcagccgtattctctccagcaagctctactttgacgtcccgagctccaaggtaaaaccagtatctaaatttgtctgtgctttcaagcatctgttcgattcggctaaatggggttggatatgtagattcttgtccatggatgatgttgtggacaagaattgcattgtagagccaaaggaagctgcaaaggaagatcttgtggtggggggaccatcttggctgcaaagcttgcaaaagagcgaggatgggccatcaatgtgggaggactgggtttatcattgtgtggttaaacatactcaaggtactaactattgcatatctgacgcagtcagaaagatcacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

156

Amino Acids

17.56

Weight (kDa)

7.56

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	194
AcyI	GRCGYC	2 cut(s)	111, 162
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	4 cut(s)	151, 171, 308, 354
AluI	AGCT	4 cut(s)	151, 171, 308, 354
Alw21I	GWGCWC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	90, 129, 308, 346
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	335, 374
AsuHPI	GGTGA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	4 cut(s)	77, 141, 295, 333
BccI	CCATC	3 cut(s)	346, 365, 385
BceAI	ACGGC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	469
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	91, 130, 309, 347
BlsI	GCNGC	4 cut(s)	92, 131, 310, 348
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	335, 374
BmiI	GGNNCC	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	408
BsaHI	GRCGYC	2 cut(s)	111, 162
BsaJI	CCNNGG	2 cut(s)	174, 261
Bse1I	ACTGG	2 cut(s)	185, 398
BseDI	CCNNGG	2 cut(s)	174, 261
BseGI	GGATG	2 cut(s)	271, 376
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	185, 398
BseXI	GCAGC	4 cut(s)	77, 141, 295, 333
BshFI	GGCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	149, 348
BsmFI	GGGAC	2 cut(s)	149, 348
BsnI	GGCC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	319, 462
Bsp19I	CCATGG	1 cut(s)	261
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	185, 398
BssECI	CCNNGG	2 cut(s)	174, 261
BssMI	GATC	2 cut(s)	319, 462
BssNI	GRCGYC	2 cut(s)	111, 162
BssT1I	CCWWGG	2 cut(s)	174, 261
BstACI	GRCGYC	2 cut(s)	111, 162
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	149, 356
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	271, 376
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	322, 465
BstMBI	GATC	2 cut(s)	319, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	77, 141, 295, 333
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	271, 376
Cac8I	GCNNGC	2 cut(s)	149, 356
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	335, 374
CseI	GACGC	2 cut(s)	119, 458
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	2 cut(s)	64, 262
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	321, 464
DpnII	GATC	2 cut(s)	319, 462
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	174, 261
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	174, 261
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	174, 261
FaeI	CATG	2 cut(s)	67, 265
FaiI	YATR	7 cut(s)	53, 59, 65, 247, 263, 420, 443
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	2 cut(s)	149, 348
FatI	CATG	2 cut(s)	63, 261
Fnu4HI	GCNGC	4 cut(s)	91, 130, 309, 347
FokI	GGATG	2 cut(s)	278, 383
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	91, 130, 309, 347
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	4 cut(s)	91, 130, 309, 347
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	376
HgaI	GACGC	2 cut(s)	119, 458
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	2 cut(s)	111, 162
Hin1II	CATG	2 cut(s)	67, 265
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	224, 252
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	448, 458
Hpy188III	TCNNGA	2 cut(s)	73, 166
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	3 cut(s)	10, 13, 113
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	288, 311, 349, 358, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	2 cut(s)	111, 162
Hsp92II	CATG	2 cut(s)	67, 265
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	319, 462
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	58, 109, 157, 198, 379
Lsp1109I	GCAGC	4 cut(s)	77, 141, 295, 333
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	162
MalI	GATC	2 cut(s)	321, 464
MboI	GATC	2 cut(s)	319, 462
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	194, 283
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	28, 41, 361, 382
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	62, 382
MwoI	GCNNNNNNNGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	319, 462
NlaIII	CATG	2 cut(s)	67, 265
NlaIV	GGNNCC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	224, 252
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	92, 131, 310, 348
Psp124BI	GAGCTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	335, 374
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	62, 382
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	4 cut(s)	91, 130, 309, 347
Sau3AI	GATC	2 cut(s)	319, 462
Sau96I	GGNCC	2 cut(s)	335, 374
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	52, 153, 165, 173, 180, 310, 356, 430, 470
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	62, 382
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	194, 283
SspMI	CTAG	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	174, 261
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	11, 222
TasI	AATT	2 cut(s)	194, 283
TfiI	GAWTC	2 cut(s)	224, 252
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	4 cut(s)	90, 129, 308, 346
TspDTI	ATGAA	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	1 cut(s)	469
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.