AT5G35810

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001853
Physical Location & Seq
Reverse (-)
13993428 .. 13994549
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35810.1

Sequence Viewer

Length: 1044 bp
ATGCGGACTTTAGCTCATATGGTGGTAGAGGAGCTATGGAGTTTTGTTATAAAATTGCCAGTGGAGGAAATTTCGCAATTTGTGGGATCATCTCCAATGCTACTCTTTGATGCTGCACAATCTGGAAATCTTGAGCTTTTACTTATTCTCATTCGTTCTTATCCAGATCTGATATGGACGGTGGATCATAAGAACCAAAGCTTGTTCCACATTGCTGCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGCCATCAAAGATTTGATAGCTATGTATAAAGAGAAAGAATCCAACGACAACTTGTTGCATCTTGTGGCACGTTTACCACCTCCAAATAGGTTACAAGTTGTATCAGGAGCAGCACTTCAGATGCAAAGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGTATACATCAAAACAAAGAACAAAAAAGAGGAGGTGGCGCATGATCTATTTACGAAAGAGCATGACAACTTACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGACTGCATGCATTCTTGTATCAACACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTCTACCTGGTGGAAACGATACGAGTGGCGACATAAAAACACTAGGCTTCCCTACTTTTAGAAAGGAGTTCTGGTTTGAAGTGTTTATCATATCAGATTCGGTTGCCCTCCTATCATCTGTGACATCTATTATGATATTTTTGTCAATCCTGACATCTCGTTATGCAGAAGCTAGTTTCCAGACGACTTTACCAACGAAGCTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTTGCCTTCACAGCGACATTGATCTTGATCCGTGATCAAGAACCTAAATGGAGCTTAATCCTCTTAGTTTACGTGGCTTCTGCCACGGCTCTCTCATTTGTGGTGTTGCATTTTCAGCTTTGGTTTGACACACTTCGCTCAGCCTATCTGTCTAAGTTCCTCTTTCATGGACGTAAAAGTGGCCTCTACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

347

Amino Acids

39.46

Weight (kDa)

8.75

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 174 - 291 1e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 4
AclWI GGATC 3 cut(s) 94, 192, 871
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 1 cut(s) 407
AgsI TTSAA 3 cut(s) 680, 834, 843
AjnI CCWGG 1 cut(s) 607
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AlwI GGATC 3 cut(s) 94, 192, 871
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 2 cut(s) 264, 1030
ApeKI GCWGC 5 cut(s) 113, 215, 374, 590, 593
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 260
BauI CACGAG 1 cut(s) 432
BbvI GCAGC 5 cut(s) 100, 202, 386, 580, 602
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 951
BciT130I CCWGG 1 cut(s) 609
BclI TGATCA 1 cut(s) 883
BfaI CTAG 2 cut(s) 644, 774
BglII AGATCT 1 cut(s) 166
BisI GCNGC 5 cut(s) 114, 216, 375, 591, 594
BlpI GCTNAGC 1 cut(s) 988
BlsI GCNGC 5 cut(s) 115, 217, 376, 592, 595
Bme1390I CCNGG 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 3 cut(s) 100, 331, 375
Bpu1102I GCTNAGC 1 cut(s) 988
BpuEI CTTGAG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 875
BsaJI CCNNGG 1 cut(s) 933
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 933
BseGI GGATG 1 cut(s) 534
BseJI GATNNNNATC 1 cut(s) 875
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 1002
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 44, 479
BseXI GCAGC 5 cut(s) 100, 202, 386, 580, 602
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 266, 1032
BsiHKCI CYCGRG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 2 cut(s) 266, 1032
BsoBI CYCGRG 1 cut(s) 260
Bsp143I GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
Bsp1720I GCTNAGC 1 cut(s) 988
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 266, 1032
BspCNI CTCAG 1 cut(s) 1001
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 3 cut(s) 94, 192, 871
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 933
BssMI GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
BssNAI GTATAC 1 cut(s) 439
BssSI CACGAG 1 cut(s) 432
Bst1107I GTATAC 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 181, 580
BstBAI YACGTR 1 cut(s) 922
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 3 cut(s) 913, 988, 1002
BstDSI CCRYGG 1 cut(s) 933
BstF5I GGATG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 7 cut(s) 89, 169, 187, 481, 873, 879, 886
BstMBI GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
BstMWI GCNNNNNNNGC 2 cut(s) 860, 964
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 607
BstV1I GCAGC 5 cut(s) 100, 202, 386, 580, 602
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 439
BsuRI GGCC 2 cut(s) 266, 1032
BtgI CCRYGG 1 cut(s) 933
BtsCI GGATG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 66, 566
Cac8I GCNNGC 1 cut(s) 550
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 264
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 1 cut(s) 406
CviAII CATG 5 cut(s) 230, 476, 497, 549, 1016
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 913, 988, 1002
DpnI GATC 7 cut(s) 88, 168, 186, 480, 872, 878, 885
DpnII GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 554
FaeI CATG 5 cut(s) 233, 479, 500, 552, 1019
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 1 cut(s) 825
FatI CATG 5 cut(s) 229, 475, 496, 548, 1015
FauNDI CATATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 5 cut(s) 114, 216, 375, 591, 594
FokI GGATG 1 cut(s) 541
Fsp4HI GCNGC 5 cut(s) 114, 216, 375, 591, 594
FspBI CTAG 2 cut(s) 644, 774
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 114, 216, 375, 591, 594
HaeIII GGCC 2 cut(s) 266, 1032
HhaI GCGC 1 cut(s) 475
Hin1II CATG 5 cut(s) 233, 479, 500, 552, 1019
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 4 cut(s) 249, 302, 397, 698
Hpy166II GTNNAC 3 cut(s) 338, 439, 919
Hpy188I TCNGA 3 cut(s) 171, 384, 697
Hpy188III TCNNGA 9 cut(s) 123, 131, 164, 230, 369, 751, 781, 874, 887
Hpy8I GTNNAC 3 cut(s) 338, 439, 919
HpyAV CCTTC 2 cut(s) 509, 865
HpyCH4III ACNGT 2 cut(s) 181, 580
HpyCH4IV ACGT 3 cut(s) 334, 921, 1021
HpyCH4V TGCA 8 cut(s) 116, 322, 388, 548, 552, 590, 767, 958
HpyF10VI GCNNNNNNNGC 2 cut(s) 860, 964
HpyF3I CTNAG 3 cut(s) 913, 988, 1002
HpySE526I ACGT 3 cut(s) 334, 921, 1021
Hsp92II CATG 5 cut(s) 233, 479, 500, 552, 1019
HspAI GCGC 1 cut(s) 473
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
LmnI GCTCC 3 cut(s) 31, 371, 900
LpnPI CCDG 9 cut(s) 72, 108, 177, 354, 594, 621, 658, 764, 794
Lsp1109I GCAGC 5 cut(s) 100, 202, 386, 580, 602
LweI GCATC 3 cut(s) 100, 331, 375
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 2 cut(s) 644, 774
MaeII ACGT 3 cut(s) 334, 921, 1021
MaeIII GTNAC 2 cut(s) 354, 721
MalI GATC 7 cut(s) 88, 168, 186, 480, 872, 878, 885
MboI GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
MflI RGATCY 1 cut(s) 166
MluCI AATT 4 cut(s) 53, 69, 77, 834
MmeI TCCRAC 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 554
MseI TTAA 3 cut(s) 243, 417, 905
MspA1I CMGCKG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 860, 964
NdeI CATATG 1 cut(s) 18
NdeII GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
NlaIII CATG 5 cut(s) 233, 479, 500, 552, 1019
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 721
NsiI ATGCAT 1 cut(s) 554
NspI RCATGY 1 cut(s) 552
PaeI GCATGC 1 cut(s) 552
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 4 cut(s) 249, 302, 397, 698
PkrI GCNGC 5 cut(s) 115, 217, 376, 592, 595
Ppu21I YACGTR 1 cut(s) 922
PsiI TTATAA 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 3 cut(s) 243, 417, 905
SatI GCNGC 5 cut(s) 114, 216, 375, 591, 594
Sau3AI GATC 7 cut(s) 86, 166, 184, 478, 870, 876, 883
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 3 cut(s) 100, 331, 375
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 1 cut(s) 552
Sse9I AATT 4 cut(s) 53, 69, 77, 834
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 644, 774
StyD4I CCNGG 1 cut(s) 607
TaaI ACNGT 2 cut(s) 181, 580
TaiI ACGT 3 cut(s) 337, 924, 1024
TasI AATT 4 cut(s) 53, 69, 77, 834
TfiI GAWTC 4 cut(s) 249, 302, 397, 698
Tru1I TTAA 3 cut(s) 243, 417, 905
Tru9I TTAA 3 cut(s) 243, 417, 905
TscAI CASTG 2 cut(s) 66, 573
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 5 cut(s) 113, 215, 374, 590, 593
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 246, 270, 545, 1004
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 2 cut(s) 66, 573
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 2 cut(s) 644, 774
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.