Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000375.1

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

76062 .. 77165

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000375.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgcatgaacttgtggaacagctgtggaataaagtactgacattagaaattgattcaaagataagcgattttattcgagcaccctctcgcttactgtttagtgctgccgaattagggaacattgactttctgattatacttatgagatcataccccaatcttatttggaaacttgatgagcaaaatcgaagcatattccacactgcagtggttcacaggcaggagaaagttttcagcctcatttatgaattaggtggaataaaagatttgatagcatcttataaagatgatgacgataataatatgcttcatttggctgcaaagcttgcacctgccaatcgtttggatgctgatattggagcagcattgcaattgagaagagagttgcattggtttaaggaagtggagaagattgttcaaccattatatagagaaatgaggaactctgatggaaaaacacctcaagctctattcactgaggaacacaaggaattattaagagaaggtgaaaagtggatgaaaggcactgcatcatcatgtatggtggttgcgacgctcattgccactgtaatgtttgctgtttcctcaactgttcctggtggctacaacaatgcaactggccttccaatattccttaaatcaaaggtcttcattgtttttgccatatcagatgcagtatcactcatctcctctgctacttcaatcttgagttttctatcgatacttacatcacgatatactgaaggagatttcctccacttattaccaaaacaattgattgtggggcttgcaacacttttcatctctatagctaccatgatgatcacattcgttgcctctctagttatcgtacttggtcacgggtttatagggataaaggttccaatagctttggtcgctggcattccagttagtctttatgctttgcttcaatttcctcttcttgctgagatgatcagtcaagcatatctttcaagactttcttttcgtcgtagtaaccttctgttgcagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

338

Amino Acids

37.78

Weight (kDa)

7.84

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AarI	CACCTGC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	36, 852
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	57, 419, 702, 932, 975
AjnI	CCWGG	1 cut(s)	595
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	22, 325, 467, 812, 890
AluI	AGCT	5 cut(s)	22, 325, 467, 812, 890
Alw21I	GWGCWC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	3 cut(s)	104, 317, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	969, 1001
Asp700I	GAANNNNTTC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	91, 304, 374
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	2 cut(s)	822, 954
BfaI	CTAG	1 cut(s)	842
BfmI	CTRYAG	2 cut(s)	204, 807
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	105, 318, 363
BlsI	GCNGC	3 cut(s)	106, 319, 364
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	4 cut(s)	284, 337, 539, 661
BpiI	GAAGAC	1 cut(s)	640
BplI	GAGNNNNNCTC	2 cut(s)	738, 770
BpuEI	CTTGAG	2 cut(s)	447, 727
Bsa29I	ATCGAT	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	622, 908
Bse3DI	GCAATG	2 cut(s)	365, 558
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	719
BseGI	GGATG	2 cut(s)	352, 522
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	365, 558
BseMII	CTCAG	2 cut(s)	468, 939
BseNI	ACTGG	2 cut(s)	622, 908
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	91, 304, 374
BshFI	GGCC	1 cut(s)	621
BshVI	ATCGAT	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	146, 822, 954
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	2 cut(s)	469, 940
BspDI	ATCGAT	1 cut(s)	719
BspLI	GGNNCC	1 cut(s)	882
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	365, 558
BsrI	ACTGG	2 cut(s)	622, 908
BssMI	GATC	3 cut(s)	146, 822, 954
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	96, 568, 592
Bst6I	CTCTTC	2 cut(s)	373, 945
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	327, 789, 901
BstDEI	CTNAG	2 cut(s)	477, 948
BstF5I	GGATG	2 cut(s)	352, 522
BstKTI	GATC	3 cut(s)	149, 825, 957
BstMBI	GATC	3 cut(s)	146, 822, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 896
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	204, 807
BstV1I	GCAGC	3 cut(s)	91, 304, 374
BstV2I	GAAGAC	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	621
BsuTUI	ATCGAT	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	352, 522
BtsI	GCAGTG	3 cut(s)	201, 213, 525
BtsIMutI	CAGTG	5 cut(s)	201, 213, 474, 525, 564
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	327, 789, 901
ClaI	ATCGAT	1 cut(s)	719
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	35, 851
CviAII	CATG	3 cut(s)	5, 537, 817
CviQI	GTAC	2 cut(s)	35, 851
DdeI	CTNAG	2 cut(s)	477, 948
DpnI	GATC	3 cut(s)	148, 824, 956
DpnII	GATC	3 cut(s)	146, 822, 954
Eam1104I	CTCTTC	2 cut(s)	373, 945
EarI	CTCTTC	2 cut(s)	373, 945
Eco57I	CTGAAG	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 540, 820
FalI	AAGNNNNNCTT	4 cut(s)	954, 986, 967, 999
FatI	CATG	3 cut(s)	4, 536, 816
FbaI	TGATCA	2 cut(s)	822, 954
Fnu4HI	GCNGC	3 cut(s)	105, 318, 363
FokI	GGATG	2 cut(s)	359, 529
Fsp4HI	GCNGC	3 cut(s)	105, 318, 363
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	3 cut(s)	105, 318, 363
HaeIII	GGCC	1 cut(s)	621
HgaI	GACGC	1 cut(s)	562
Hin1II	CATG	3 cut(s)	8, 540, 820
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	132, 448, 670
Hpy188III	TCNNGA	3 cut(s)	706, 732, 975
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	556, 993
HpyAV	CCTTC	4 cut(s)	497, 632, 737, 1010
HpyCH4III	ACNGT	3 cut(s)	96, 568, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 896
HpyF3I	CTNAG	2 cut(s)	477, 948
Hsp92II	CATG	3 cut(s)	8, 540, 820
Ksp22I	TGATCA	2 cut(s)	822, 954
Kzo9I	GATC	3 cut(s)	146, 822, 954
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	8 cut(s)	202, 206, 345, 582, 603, 609, 885, 921
Lsp1109I	GCAGC	3 cut(s)	91, 304, 374
LweI	GCATC	4 cut(s)	284, 337, 539, 661
MaeI	CTAG	1 cut(s)	842
MaeIII	GTNAC	2 cut(s)	857, 995
MalI	GATC	3 cut(s)	148, 824, 956
MboI	GATC	3 cut(s)	146, 822, 954
MboII	GAAGA	4 cut(s)	390, 421, 640, 932
MfeI	CAATTG	2 cut(s)	371, 773
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	7 cut(s)	48, 110, 248, 371, 491, 773, 932
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	3 cut(s)	396, 497, 636
MslI	CAYNNNNRTG	3 cut(s)	206, 535, 569
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	2 cut(s)	371, 773
Mva1269I	GAATGC	1 cut(s)	903
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	326, 896
NdeII	GATC	3 cut(s)	146, 822, 954
NlaIII	CATG	3 cut(s)	8, 540, 820
NlaIV	GGNNCC	1 cut(s)	882
NmuCI	GTSAC	1 cut(s)	857
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	340
PctI	GAATGC	1 cut(s)	903
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	106, 319, 364
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	882
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	36, 852
RsaNI	GTAC	2 cut(s)	35, 851
RseI	CAYNNNNRTG	3 cut(s)	206, 535, 569
SaqAI	TTAA	3 cut(s)	396, 497, 636
SatI	GCNGC	3 cut(s)	105, 318, 363
Sau3AI	GATC	3 cut(s)	146, 822, 954
ScaI	AGTACT	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	4 cut(s)	284, 337, 539, 661
SfcI	CTRYAG	2 cut(s)	204, 807
SmiMI	CAYNNNNRTG	3 cut(s)	206, 535, 569
SmlI	CTYRAG	2 cut(s)	462, 706
SmoI	CTYRAG	2 cut(s)	462, 706
Sse9I	AATT	7 cut(s)	48, 110, 248, 371, 491, 773, 932
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	96, 568, 592
TaqI	TCGA	3 cut(s)	76, 187, 719
TasI	AATT	7 cut(s)	48, 110, 248, 371, 491, 773, 932
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	396, 497, 636
Tru9I	TTAA	3 cut(s)	396, 497, 636
TscAI	CASTG	5 cut(s)	208, 213, 481, 532, 571
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	3 cut(s)	104, 317, 362
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	6 cut(s)	21, 261, 299, 533, 640, 790
TspRI	CASTG	5 cut(s)	208, 213, 481, 532, 571
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	842
ZrmI	AGTACT	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.