Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

25049007 .. 25053211

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCAGAGAATCTAACCACATCATCGCCATTTGAAGTTGAAGAAGGAGTTTCAACCCAAGAGAACTTCCCAAAAGAATCTGCAGGAGAAGTTAAGCAAGAGACATGTGGACTAACCTTTGGAGGCGACAATGGCACCGCTGCCACATCCGGCAGACAATCATTTGCAACAAGCGATGGAGGGTACAGTGCAGGTCCTCCGTCTAGCAGGACAACATGTGCAACAATAAGCTACGAAGGTTACTACAGCAGCGGTGGAACGTCTAGCTGCAGACCGACGTGTCATCCGTTACCACCTGGCCTCGGAACACCAATTATCGCAATTGTTCATAGTCCTGAATTTACGTTTGGTGGATGGGGTAATTCTACTGAAAATGTTGATGTAGAGATTGGCCATGATCAGCAACCTGATGATCTGGAGGCTACATATACTGCAGAAGAAGCCGAAAGAAAACAAAGGGAAGATGCAGCTTCCCCAGTAATAACCCACTCAGACTCCATTTCAAATGTAGCTCTGGATATTGTTAAACAACACCCTGAAATGGCTCTTGCTCGAGATGAAAACGAAGAGACTGCACTCCATGTAATGGCGCGAAAACCTTCAGCATATCATAATGGAAGTCAGCTTGGATTTTGGAAACGATGCATATTCTCTTTCCCCAGGAATTTCAAGCGTTCCTGCGAAGAAAAGTGGCGGCTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

234

Amino Acids

25.43

Weight (kDa)

4.96

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	1 cut(s)	592
AciI	CCGC	3 cut(s)	138, 252, 694
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	338, 664
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	302, 541, 586
AflIII	ACRYGT	3 cut(s)	104, 215, 278
AgsI	TTSAA	5 cut(s)	35, 41, 54, 504, 670
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	2 cut(s)	295, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	5 cut(s)	231, 267, 470, 512, 625
AluI	AGCT	5 cut(s)	231, 267, 470, 512, 625
Alw26I	GTCTC	2 cut(s)	95, 563
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	2 cut(s)	298, 391
ApeKI	GCWGC	4 cut(s)	140, 249, 267, 467
ApoI	RAATTY	2 cut(s)	338, 664
Asp700I	GAANNNNTTC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	127, 254, 261, 479
BccI	CCATC	2 cut(s)	170, 348
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	2 cut(s)	297, 661
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	95, 563
BfaI	CTAG	2 cut(s)	204, 264
BfmI	CTRYAG	4 cut(s)	81, 244, 268, 432
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	141, 250, 268, 468, 695
BlsI	GCNGC	5 cut(s)	142, 251, 269, 469, 696
Bme1390I	CCNGG	2 cut(s)	297, 661
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	552
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	297, 661
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	454, 632
BmuI	ACTGGG	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	301, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 541, 586
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	297, 661
BseDI	CCNNGG	2 cut(s)	301, 659
BseGI	GGATG	3 cut(s)	146, 283, 359
BseLI	CCNNNNNNNGG	3 cut(s)	302, 541, 586
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	127, 254, 261, 479
BsgI	GTGCAG	2 cut(s)	210, 558
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	300, 393
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	3 cut(s)	302, 541, 586
BsmAI	GTCTC	2 cut(s)	95, 563
BsnI	GGCC	2 cut(s)	300, 393
BsoBI	CYCGRG	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	397, 412
BspACI	CCGC	3 cut(s)	138, 252, 694
BspANI	GGCC	2 cut(s)	300, 393
BspCNI	CTCAG	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	3 cut(s)	85, 272, 436
BspMI	ACCTGC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	301, 659
BssMI	GATC	2 cut(s)	397, 412
Bst2UI	CCWGG	2 cut(s)	297, 661
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	146, 283, 359
BstFNI	CGCG	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	2 cut(s)	400, 415
BstMAI	GTCTC	2 cut(s)	95, 563
BstMBI	GATC	2 cut(s)	397, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 440
BstNI	CCWGG	2 cut(s)	297, 661
BstNSI	RCATGY	2 cut(s)	108, 219
BstSCI	CCNGG	2 cut(s)	295, 659
BstSFI	CTRYAG	4 cut(s)	81, 244, 268, 432
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	4 cut(s)	127, 254, 261, 479
BsuRI	GGCC	2 cut(s)	300, 393
BtgZI	GCGATG	2 cut(s)	9, 189
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	146, 283, 359
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	105, 216, 395, 581
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	2 cut(s)	399, 414
DpnII	GATC	2 cut(s)	397, 412
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	295, 659
EcoT22I	ATGCAT	1 cut(s)	647
FaeI	CATG	4 cut(s)	108, 219, 398, 584
FatI	CATG	4 cut(s)	104, 215, 394, 580
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	141, 250, 268, 468, 695
FokI	GGATG	3 cut(s)	133, 270, 366
Fsp4HI	GCNGC	5 cut(s)	141, 250, 268, 468, 695
FspBI	CTAG	2 cut(s)	204, 264
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	5 cut(s)	141, 250, 268, 468, 695
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	300, 393
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	4 cut(s)	108, 219, 398, 584
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HinfI	GANTC	3 cut(s)	10, 77, 494
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	7, 305, 493
Hpy188III	TCNNGA	4 cut(s)	335, 416, 515, 554
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	38, 230, 609
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	4 cut(s)	260, 278, 344, 700
HpyCH4V	TGCA	9 cut(s)	83, 167, 191, 221, 270, 434, 467, 575, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 440
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	4 cut(s)	260, 278, 344, 700
Hsp92II	CATG	4 cut(s)	108, 219, 398, 584
HspAI	GCGC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	397, 412
Lsp1109I	GCAGC	4 cut(s)	127, 254, 261, 479
LweI	GCATC	2 cut(s)	454, 632
MaeI	CTAG	2 cut(s)	204, 264
MaeII	ACGT	4 cut(s)	260, 278, 344, 700
MaeIII	GTNAC	2 cut(s)	239, 288
MalI	GATC	2 cut(s)	399, 414
MboI	GATC	2 cut(s)	397, 412
MboII	GAAGA	5 cut(s)	53, 449, 473, 578, 695
MfeI	CAATTG	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	5 cut(s)	312, 321, 338, 361, 664
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	5 cut(s)	116, 173, 207, 311, 412
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	647
MroXI	GAANNNNTTC	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	93, 525
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	140, 252
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	297, 661
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	297, 661
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	2 cut(s)	132, 440
NdeII	GATC	2 cut(s)	397, 412
NlaIII	CATG	4 cut(s)	108, 219, 398, 584
NlaIV	GGNNCC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	2 cut(s)	108, 219
PaeR7I	CTCGAG	1 cut(s)	552
PciI	ACATGT	2 cut(s)	104, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	10, 77
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	5 cut(s)	142, 251, 269, 469, 696
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	2 cut(s)	104, 215
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	295, 659
PspGI	CCWGG	2 cut(s)	295, 659
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	3 cut(s)	85, 272, 436
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	93, 525
SatI	GCNGC	5 cut(s)	141, 250, 268, 468, 695
Sau3AI	GATC	2 cut(s)	397, 412
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	297, 661
SfaNI	GCATC	2 cut(s)	454, 632
SfcI	CTRYAG	4 cut(s)	81, 244, 268, 432
Sfr274I	CTCGAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	5 cut(s)	312, 321, 338, 361, 664
SsiI	CCGC	3 cut(s)	138, 252, 694
SspMI	CTAG	2 cut(s)	204, 264
StyD4I	CCNGG	2 cut(s)	295, 659
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	4 cut(s)	263, 281, 347, 703
TaqI	TCGA	1 cut(s)	553
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	5 cut(s)	312, 321, 338, 361, 664
TauI	GCSGC	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	10, 77
Tru1I	TTAA	2 cut(s)	93, 525
Tru9I	TTAA	2 cut(s)	93, 525
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	4 cut(s)	140, 249, 267, 467
TspDTI	ATGAA	2 cut(s)	317, 573
TspGWI	ACGGA	2 cut(s)	189, 276
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	338, 664
XceI	RCATGY	2 cut(s)	108, 219
XhoI	CTCGAG	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	2 cut(s)	204, 264
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.