Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003135.1

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

51792 .. 53651

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003135.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atggcttttgctcgagatagaaatggagagacagcactacatgtattggctcgaaagccttcagcatgttatagtggaagtcagctgggatctttgaaacgatggataacttcgtatgtggctatggatatagttgaacaacaccctgaaattacttctgttcaagatgaaattgtggagactacactccaaatagtggagccttcggcatgttatagtggaaatcagctgggactttggaaacgattgatattatctgtccccaatatccaggtctcatacgacaaaaagttgaatcatatgcaagcaactgaacttgtgaagctgctttggaaaaaagttttgacactagggagtgatttggggataaatgatttgatcaatgtaccctctcgcttattgtttactgctgctgaattggggaatatagagtttctcattatacttattagatcgtaccccagtctcatttggcaagttgatgaacaaaaccgaagcatatttcatgctgcattgattcatcgacaggaaaaagttttcaatctcatttatgaattaggtggtctgaaagacttaatagcctcgtataaagatgtaaacaacaataacatgcttcatttggctgcacgagcatctccaaatcgactaagtattgatacaggggcagcattgaaattgcgaagagagttgacttggtttaaggtggagaagattgtccagccattatacaaagaaatgaggaactcagatggagaaacacctcaacttcttttcaccaaggaacacaaggaactactacgacaaggagaagagtggatgaagggcactgcatcatcatgcatggttgtggcaactcttattgccactgtaatgttttctgtcttctccactgtccccggtggcaacaacaataacacaggcattcccatattccttaaatcaagggccttcaaggtttttgtcatatcagattcaatatccctcatctcatcgaccacttcaatcttgagttttctgtccattcttacatcacgctacactgaaggagattttctcaattcgttaccgtatagattgatcgtggggcttgctaccttatttatctctatggctacaatgatgatgacatatgttgccacacttcttatggttcttggccctggatttcatgagataaaatttccagttgctttggttgctgcagttccagttggtttctacgcgttactacagtttcctcttctatctgatatgatctgtcatgcttatatctcacgagtttcttttcgtccatgcaaccacctcttgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

437

Amino Acids

48.99

Weight (kDa)

8.81

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccII	CGCG	1 cut(s)	1223
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	1178
AcuI	CTGAAG	2 cut(s)	45, 1062
AfaI	GTAC	2 cut(s)	387, 458
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	2 cut(s)	40, 1221
AgsI	TTSAA	9 cut(s)	97, 137, 164, 295, 541, 673, 952, 975, 1002
AjnI	CCWGG	2 cut(s)	270, 1159
AluBI	AGCT	3 cut(s)	85, 229, 325
AluI	AGCT	3 cut(s)	85, 229, 325
Alw26I	GTCTC	4 cut(s)	23, 173, 280, 470
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	945, 1156
ApeKI	GCWGC	6 cut(s)	325, 410, 509, 623, 665, 1199
ApoI	RAATTY	1 cut(s)	1178
Asp700I	GAANNNNTTC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	945, 1157
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	827
BauI	CACGAG	2 cut(s)	627, 1275
BbsI	GAAGAC	1 cut(s)	874
BbvI	GCAGC	6 cut(s)	312, 397, 496, 610, 677, 1186
BccI	CCATC	2 cut(s)	96, 743
BciT130I	CCWGG	2 cut(s)	272, 1161
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	4 cut(s)	23, 173, 280, 470
BfaI	CTAG	2 cut(s)	350, 1312
BfmI	CTRYAG	2 cut(s)	1200, 1229
BisI	GCNGC	6 cut(s)	326, 411, 510, 624, 666, 1200
BlsI	GCNGC	6 cut(s)	327, 412, 511, 625, 667, 1201
Bme1390I	CCNGG	3 cut(s)	272, 897, 1161
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	945, 1157
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	3 cut(s)	272, 897, 1161
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	641, 839
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	874
BplI	GAGNNNNNCTC	2 cut(s)	1038, 1070
BpuEI	CTTGAG	1 cut(s)	1027
BpuMI	CCSGG	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	777, 895, 1159
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	462, 1184, 1208
BseBI	CCWGG	2 cut(s)	272, 1161
BseDI	CCNNGG	3 cut(s)	777, 895, 1159
BseGI	GGATG	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	462, 1184, 1208
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	6 cut(s)	312, 397, 496, 610, 677, 1186
BseYI	CCCAGC	2 cut(s)	85, 229
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	1223
BshFI	GGCC	2 cut(s)	947, 1158
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	3 cut(s)	245, 246, 878
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	4 cut(s)	23, 173, 280, 470
BsmFI	GGGAC	3 cut(s)	245, 246, 878
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	2 cut(s)	947, 1158
Bso31I	GGTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	5 cut(s)	89, 378, 452, 1077, 1254
BspANI	GGCC	2 cut(s)	947, 1158
BspCNI	CTCAG	1 cut(s)	758
BspFNI	CGCG	1 cut(s)	1223
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	1204
BspPI	GGATC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	462, 1184, 1208
BssECI	CCNNGG	3 cut(s)	777, 895, 1159
BssMI	GATC	5 cut(s)	89, 378, 452, 1077, 1254
BssSI	CACGAG	2 cut(s)	627, 1275
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	2 cut(s)	627, 1275
Bst2UI	CCWGG	2 cut(s)	272, 1161
Bst4CI	ACNGT	4 cut(s)	868, 892, 1068, 1233
Bst6I	CTCTTC	3 cut(s)	676, 804, 1245
BstC8I	GCNNGC	2 cut(s)	306, 1089
BstDEI	CTNAG	2 cut(s)	647, 745
BstF5I	GGATG	1 cut(s)	822
BstFNI	CGCG	1 cut(s)	1223
BstKTI	GATC	5 cut(s)	92, 381, 455, 1080, 1257
BstMAI	GTCTC	4 cut(s)	23, 173, 280, 470
BstMBI	GATC	5 cut(s)	89, 378, 452, 1077, 1254
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 1196
BstNI	CCWGG	2 cut(s)	272, 1161
BstNSI	RCATGY	4 cut(s)	44, 69, 213, 613
BstSCI	CCNGG	3 cut(s)	270, 895, 1159
BstSFI	CTRYAG	2 cut(s)	1200, 1229
BstSLI	GKGCMC	1 cut(s)	827
BstUI	CGCG	1 cut(s)	1223
BstV1I	GCAGC	6 cut(s)	312, 397, 496, 610, 677, 1186
BstV2I	GAAGAC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	947, 1158
BtsCI	GGATG	1 cut(s)	822
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	4 cut(s)	825, 864, 888, 1038
Cac8I	GCNNGC	2 cut(s)	306, 1089
CciI	TCATGA	1 cut(s)	1168
Cfr13I	GGNCC	2 cut(s)	945, 1157
Csp6I	GTAC	2 cut(s)	386, 457
CviQI	GTAC	2 cut(s)	386, 457
DdeI	CTNAG	2 cut(s)	647, 745
DpnI	GATC	5 cut(s)	91, 380, 454, 1079, 1256
DpnII	GATC	5 cut(s)	89, 378, 452, 1077, 1254
Eam1104I	CTCTTC	3 cut(s)	676, 804, 1245
EarI	CTCTTC	3 cut(s)	676, 804, 1245
Eco130I	CCWWGG	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	45, 1062
Eco88I	CYCGRG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	270, 1159
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	777
FaqI	GGGAC	3 cut(s)	245, 246, 878
FauNDI	CATATG	2 cut(s)	300, 1129
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	6 cut(s)	326, 411, 510, 624, 666, 1200
FokI	GGATG	1 cut(s)	829
Fsp4HI	GCNGC	6 cut(s)	326, 411, 510, 624, 666, 1200
FspBI	CTAG	2 cut(s)	350, 1312
GluI	GCNGC	6 cut(s)	326, 411, 510, 624, 666, 1200
GsaI	CCCAGC	2 cut(s)	89, 233
HaeIII	GGCC	2 cut(s)	947, 1158
HapII	CCGG	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	3 cut(s)	295, 517, 971
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	3 cut(s)	405, 598, 690
Hpy188I	TCNGA	4 cut(s)	567, 748, 970, 1249
Hpy188III	TCNNGA	5 cut(s)	14, 164, 1006, 1169, 1275
Hpy8I	GTNNAC	3 cut(s)	405, 598, 690
HpyAV	CCTTC	5 cut(s)	69, 213, 814, 958, 1037
HpyCH4III	ACNGT	4 cut(s)	868, 892, 1068, 1233
HpyCH4V	TGCA	8 cut(s)	304, 512, 626, 830, 840, 1202, 1296, 1309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 1196
HpyF3I	CTNAG	2 cut(s)	647, 745
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	5 cut(s)	89, 378, 452, 1077, 1254
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	6 cut(s)	312, 397, 496, 610, 677, 1186
LweI	GCATC	2 cut(s)	641, 839
MaeI	CTAG	2 cut(s)	350, 1312
MaeIII	GTNAC	2 cut(s)	1062, 1224
MalI	GATC	5 cut(s)	91, 380, 454, 1079, 1256
MboI	GATC	5 cut(s)	89, 378, 452, 1077, 1254
MboII	GAAGA	5 cut(s)	693, 721, 821, 874, 1232
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	7 cut(s)	150, 171, 416, 554, 674, 1057, 1178
MluI	ACGCGT	1 cut(s)	1221
MnlI	CCTC	7 cut(s)	400, 592, 732, 771, 992, 1248, 1313
Mph1103I	ATGCAT	1 cut(s)	842
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	3 cut(s)	575, 699, 936
MslI	CAYNNNNRTG	3 cut(s)	835, 845, 869
MspA1I	CMGCKG	2 cut(s)	85, 229
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	3 cut(s)	272, 897, 1161
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	2 cut(s)	272, 1161
MvnI	CGCG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	2 cut(s)	629, 1196
NciI	CCSGG	1 cut(s)	897
NdeI	CATATG	2 cut(s)	300, 1129
NdeII	GATC	5 cut(s)	89, 378, 452, 1077, 1254
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	842
NspI	RCATGY	4 cut(s)	44, 69, 213, 613
PaeR7I	CTCGAG	1 cut(s)	12
PagI	TCATGA	1 cut(s)	1168
PciI	ACATGT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	295, 517, 971
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	6 cut(s)	327, 412, 511, 625, 667, 1201
PscI	ACATGT	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	270, 1159
PspFI	CCCAGC	2 cut(s)	85, 229
PspGI	CCWGG	2 cut(s)	270, 1159
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	945, 1157
PstI	CTGCAG	1 cut(s)	1204
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	2 cut(s)	85, 229
RsaI	GTAC	2 cut(s)	387, 458
RsaNI	GTAC	2 cut(s)	386, 457
RseI	CAYNNNNRTG	3 cut(s)	835, 845, 869
SaqAI	TTAA	3 cut(s)	575, 699, 936
SatI	GCNGC	6 cut(s)	326, 411, 510, 624, 666, 1200
Sau3AI	GATC	5 cut(s)	89, 378, 452, 1077, 1254
Sau96I	GGNCC	2 cut(s)	945, 1157
ScrFI	CCNGG	3 cut(s)	272, 897, 1161
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	2 cut(s)	641, 839
SfcI	CTRYAG	2 cut(s)	1200, 1229
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	3 cut(s)	835, 845, 869
SmlI	CTYRAG	2 cut(s)	12, 1006
SmoI	CTYRAG	2 cut(s)	12, 1006
Sse9I	AATT	7 cut(s)	150, 171, 416, 554, 674, 1057, 1178
SspMI	CTAG	2 cut(s)	350, 1312
StyD4I	CCNGG	3 cut(s)	270, 895, 1159
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	4 cut(s)	868, 892, 1068, 1233
TaqI	TCGA	5 cut(s)	13, 52, 523, 643, 992
TasI	AATT	7 cut(s)	150, 171, 416, 554, 674, 1057, 1178
TfiI	GAWTC	3 cut(s)	295, 517, 971
Tru1I	TTAA	3 cut(s)	575, 699, 936
Tru9I	TTAA	3 cut(s)	575, 699, 936
TscAI	CASTG	4 cut(s)	832, 871, 895, 1045
TseI	GCWGC	6 cut(s)	325, 410, 509, 623, 665, 1199
TspDTI	ATGAA	8 cut(s)	183, 494, 498, 509, 567, 605, 833, 1157
TspRI	CASTG	4 cut(s)	832, 871, 895, 1045
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	1178
XceI	RCATGY	4 cut(s)	44, 69, 213, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XhoI	CTCGAG	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	2 cut(s)	350, 1312
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.