Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

24927348 .. 24928110

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCAGAGAAACTAACCACATCATCGCCATTTGAAGTTGAAGAAGGAGTCTCAACCCAAGAGAACTTCCCAAAAGAATCTGCAGGAGAAGTTATGCAAGAGACATGTGGACTAACCTTTGGAGGCGACAATGGCACCGCTGCCACATCCGGCAGACAGTCATTTGCAACAAGCGATGGAGGGTATAGTGCAGGTCCTCCGTCTAGCAGGACAACATGTGCAACAATAAGCTACGGAGGTTACTACAGCAGCGGTGGAACGTCTAGCTGCAGACCGACGTGTCATCCGTTACCACCTGGCCTCGGAACACCAATTATCGCAATTGTTCATAGTCCTGAATTGACGTTTGGTGGATGGGCTAATTCTACTGAAAATGTTGATGTAGAGATTGGCCATGATCAGCAACTTGATGATCTGGAGGCTACATATACTGCAGAAGAAGCCGAAAGAAAACAAAGGGAAGATGCAGCTTCCCCAGTAATAACCCACTCAGACTCCATTTCAATTTGTTGGCCACTCAGAAAATTACTTGATAGGGGAAGAAATGAGTCTCATTCCAACAACGACCATGAAACTAGTATTGCAGGACCACCAAGTGAGCATGTTCCAAATAACGTCGCAAATTCATCTAACATCATTTCGTGTATGTTCTTCCAACTTACATATGATCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

225

Amino Acids

23.97

Weight (kDa)

4.52

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	138, 252
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	2 cut(s)	391, 512
AcsI	RAATTY	1 cut(s)	622
AdeI	CACNNNGTG	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	3 cut(s)	104, 215, 278
AgsI	TTSAA	3 cut(s)	35, 41, 504
AhlI	ACTAGT	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	231, 267, 470
AluI	AGCT	3 cut(s)	231, 267, 470
Alw26I	GTCTC	3 cut(s)	55, 95, 555
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	3 cut(s)	298, 391, 512
ApeKI	GCWGC	4 cut(s)	140, 249, 267, 467
ApoI	RAATTY	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	194, 587
AvaII	GGWCC	2 cut(s)	194, 587
BalI	TGGCCA	2 cut(s)	393, 514
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	127, 254, 261, 479
BccI	CCATC	2 cut(s)	170, 348
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	55, 95, 555
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	3 cut(s)	204, 264, 576
BfmI	CTRYAG	4 cut(s)	81, 244, 268, 432
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	141, 250, 268, 468
BlsI	GCNGC	4 cut(s)	142, 251, 269, 469
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	2 cut(s)	194, 587
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	194, 587
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	146, 283, 359
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	504, 532
BseNI	ACTGG	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	127, 254, 261, 479
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	300, 393, 514
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	3 cut(s)	55, 95, 555
BsnI	GGCC	3 cut(s)	300, 393, 514
Bsp143I	GATC	3 cut(s)	397, 412, 667
BspACI	CCGC	2 cut(s)	138, 252
BspANI	GGCC	3 cut(s)	300, 393, 514
BspCNI	CTCAG	2 cut(s)	503, 531
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	3 cut(s)	85, 272, 436
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	397, 412, 667
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	490, 518
BstF5I	GGATG	3 cut(s)	146, 283, 359
BstKTI	GATC	3 cut(s)	400, 415, 670
BstMAI	GTCTC	3 cut(s)	55, 95, 555
BstMBI	GATC	3 cut(s)	397, 412, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 440
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	3 cut(s)	108, 219, 605
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	4 cut(s)	81, 244, 268, 432
BstV1I	GCAGC	4 cut(s)	127, 254, 261, 479
BsuRI	GGCC	3 cut(s)	300, 393, 514
BtgZI	GCGATG	2 cut(s)	9, 189
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	146, 283, 359
BveI	ACCTGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	194, 587
CviAII	CATG	5 cut(s)	105, 216, 395, 569, 602
CviJI	RGCY	9 cut(s)	231, 267, 300, 359, 393, 422, 443, 470, 514
CviKI_1	RGCY	9 cut(s)	231, 267, 300, 359, 393, 422, 443, 470, 514
DdeI	CTNAG	2 cut(s)	490, 518
DpnI	GATC	3 cut(s)	399, 414, 669
DpnII	GATC	3 cut(s)	397, 412, 667
DraIII	CACNNNGTG	1 cut(s)	596
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	391, 512
Eco47I	GGWCC	2 cut(s)	194, 587
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	5 cut(s)	108, 219, 398, 572, 605
FatI	CATG	5 cut(s)	104, 215, 394, 568, 601
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	141, 250, 268, 468
FokI	GGATG	3 cut(s)	133, 270, 366
Fsp4HI	GCNGC	4 cut(s)	141, 250, 268, 468
FspBI	CTAG	3 cut(s)	204, 264, 576
GluI	GCNGC	4 cut(s)	141, 250, 268, 468
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	300, 393, 514
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	5 cut(s)	108, 219, 398, 572, 605
HinfI	GANTC	4 cut(s)	48, 77, 494, 548
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	4 cut(s)	7, 305, 493, 521
Hpy188III	TCNNGA	3 cut(s)	335, 416, 671
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	280, 620
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	4 cut(s)	260, 278, 344, 615
HpyCH4V	TGCA	9 cut(s)	83, 97, 167, 191, 221, 270, 434, 467, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 440
HpyF3I	CTNAG	2 cut(s)	490, 518
HpySE526I	ACGT	4 cut(s)	260, 278, 344, 615
Hsp92II	CATG	5 cut(s)	108, 219, 398, 572, 605
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	397, 412, 667
Lsp1109I	GCAGC	4 cut(s)	127, 254, 261, 479
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	3 cut(s)	204, 264, 576
MaeII	ACGT	4 cut(s)	260, 278, 344, 615
MaeIII	GTNAC	2 cut(s)	239, 288
MalI	GATC	3 cut(s)	399, 414, 669
MboI	GATC	3 cut(s)	397, 412, 667
MboII	GAAGA	5 cut(s)	53, 449, 473, 552, 643
MfeI	CAATTG	1 cut(s)	321
MlsI	TGGCCA	2 cut(s)	393, 514
MluCI	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
MluNI	TGGCCA	2 cut(s)	393, 514
MlyI	GAGTC	3 cut(s)	57, 488, 557
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	116, 173, 207, 230, 311, 412
Mox20I	TGGCCA	2 cut(s)	393, 514
MscI	TGGCCA	2 cut(s)	393, 514
Msp20I	TGGCCA	2 cut(s)	393, 514
MspA1I	CMGCKG	2 cut(s)	140, 252
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	132, 440
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	3 cut(s)	397, 412, 667
NlaIII	CATG	5 cut(s)	108, 219, 398, 572, 605
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	3 cut(s)	108, 219, 605
PciI	ACATGT	2 cut(s)	104, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	142, 251, 269, 469
PleI	GAGTC	3 cut(s)	56, 488, 556
PpsI	GAGTC	3 cut(s)	56, 488, 556
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	2 cut(s)	104, 215
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	194, 587
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	3 cut(s)	85, 272, 436
SatI	GCNGC	4 cut(s)	141, 250, 268, 468
Sau3AI	GATC	3 cut(s)	397, 412, 667
Sau96I	GGNCC	2 cut(s)	194, 587
SchI	GAGTC	3 cut(s)	57, 488, 557
ScrFI	CCNGG	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	4 cut(s)	81, 244, 268, 432
SinI	GGWCC	2 cut(s)	194, 587
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
SsiI	CCGC	2 cut(s)	138, 252
SspMI	CTAG	3 cut(s)	204, 264, 576
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	4 cut(s)	263, 281, 347, 618
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
TfiI	GAWTC	1 cut(s)	77
TseI	GCWGC	4 cut(s)	140, 249, 267, 467
TspDTI	ATGAA	3 cut(s)	317, 585, 615
TspGWI	ACGGA	3 cut(s)	189, 249, 276
VpaK11BI	GGWCC	2 cut(s)	194, 587
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	3 cut(s)	108, 219, 605
XspI	CTAG	3 cut(s)	204, 264, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.