Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

24928783 .. 24931960

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGGAGGTTAATCCGAGATTACCTCGGATCCGAGGCAGTAACAATTCAACAGCTCTGCATATGGCTACTTTGCTAGGGCACAGGGAGATGGTACGGTATCTTTACAGCAAGACTAAAAGAATTTTGACCTACCAGGACCGTGTGGGGCTTCTTATTGCTGCCATAACAGCAGATCTTTATGATGTAGCTCTGGATATTGTTAAACAACACCCTGAAATGGCTCTTGCTCGAGATGAAAATGAAGAGACTGCACTCCATGTAATGGCGCGAAAACCTTCAGCATATCATAATGGAAGTCAGCTTGGATTTTGGAAACGATGCATATTCTCTTTCCCCAGGAATTTCAAGCGTTCCTTTGAAGAAAAGAAATTCCTCTATAAATTTTACCGTACGATTATAAAAGTAATGATCTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

140

Amino Acids

16.44

Weight (kDa)

9.95

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccII	CGCG	1 cut(s)	271
AclWI	GGATC	2 cut(s)	25, 38
AcsI	RAATTY	4 cut(s)	123, 343, 371, 383
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	96, 394
AfiI	CCNNNNNNNGG	2 cut(s)	220, 265
AgsI	TTSAA	4 cut(s)	51, 349, 362, 418
AjnI	CCWGG	2 cut(s)	135, 338
AluBI	AGCT	3 cut(s)	56, 191, 304
AluI	AGCT	3 cut(s)	56, 191, 304
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	25, 38
Ama87I	CYCGRG	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	4 cut(s)	123, 343, 371, 383
Asp700I	GAANNNNTTC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	137, 340
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	137, 340
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	137, 340
BmsI	GCATC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BsaJI	CCNNGG	3 cut(s)	26, 34, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 265
BseBI	CCWGG	2 cut(s)	137, 340
BseDI	CCNNGG	3 cut(s)	26, 34, 338
BseLI	CCNNNNNNNGG	2 cut(s)	220, 265
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	231
BsiWI	CGTACG	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	220, 265
BsmAI	GTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	30, 175, 411
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	25, 38
BssECI	CCNNGG	3 cut(s)	26, 34, 338
BssMI	GATC	3 cut(s)	30, 175, 411
Bst2UI	CCWGG	2 cut(s)	137, 340
Bst4CI	ACNGT	3 cut(s)	99, 143, 392
Bst6I	CTCTTC	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	33, 178, 414
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	30, 175, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	137, 340
BstSCI	CCNGG	2 cut(s)	135, 338
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	30, 175
BstYI	RGATCY	2 cut(s)	30, 175
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	95, 393
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	56, 68, 151, 191, 224, 304
CviKI_1	RGCY	6 cut(s)	56, 68, 151, 191, 224, 304
CviQI	GTAC	2 cut(s)	95, 393
DpnI	GATC	3 cut(s)	32, 177, 413
DpnII	GATC	3 cut(s)	30, 175, 411
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	135, 338
EcoT22I	ATGCAT	1 cut(s)	326
FaeI	CATG	1 cut(s)	263
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	18, 30, 35
Hpy188III	TCNNGA	3 cut(s)	194, 233, 415
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	3 cut(s)	99, 143, 392
HpyCH4V	TGCA	3 cut(s)	61, 254, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	30, 175, 411
LpnPI	CCDG	7 cut(s)	70, 122, 149, 179, 228, 325, 352
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	32, 177, 413
MboI	GATC	3 cut(s)	30, 175, 411
MboII	GAAGA	2 cut(s)	257, 374
MflI	RGATCY	2 cut(s)	30, 175
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	46, 123, 343, 371, 383, 418
MnlI	CCTC	3 cut(s)	29, 36, 386
Mph1103I	ATGCAT	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	2 cut(s)	12, 204
MspR9I	CCNGG	2 cut(s)	137, 340
MvaI	CCWGG	2 cut(s)	137, 340
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	3 cut(s)	30, 175, 411
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	277
Pfl23II	CGTACG	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	135, 338
PspGI	CCWGG	2 cut(s)	135, 338
PspLI	CGTACG	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	30, 175
RsaI	GTAC	2 cut(s)	96, 394
RsaNI	GTAC	2 cut(s)	95, 393
SaqAI	TTAA	2 cut(s)	12, 204
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	30, 175, 411
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	137, 340
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	7 cut(s)	12, 28, 58, 134, 193, 280, 306
SfaNI	GCATC	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	6 cut(s)	46, 123, 343, 371, 383, 418
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	135, 338
TaaI	ACNGT	3 cut(s)	99, 143, 392
TaqI	TCGA	1 cut(s)	232
TasI	AATT	6 cut(s)	46, 123, 343, 371, 383, 418
Tru1I	TTAA	2 cut(s)	12, 204
Tru9I	TTAA	2 cut(s)	12, 204
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	252, 258
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	4 cut(s)	123, 343, 371, 383
XhoI	CTCGAG	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.