RchiOBHm_Chr5g0059351

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001853
Physical Location & Seq
Forward (+)
64264848 .. 64266336
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33595

Sequence Viewer

Length: 1065 bp
ATGATACATACCATCGCCAATATTAAGGTCACCTGCGAAAAAGGTATCGTGCATGAACTTGTGGAACAGCTGTGGAATAAAGTACTGACATTAGAAATTGATTCAAAGATAAGCGATTTTATTCGATCACCCTCTCGCTTACTGTTTAGTGCTGCCGAATTAGGGAACATTGACTTTTTGATTATACTTATAAGATCATACCCTAATCTTATTTGGAAACTTGATGAGCAAAAGCGAAGCATATTCCACACTGCAGTGGTTCACAGGCAGGAGAAAGTTTTCAACCTCATTTATGAATTAGGTGGAATAAAAGATTTGATAGCATCTTATAAAGATGATGACGATAATAATATGCTTCATTTGGCTGCAAAGCTTGCACCTGCCAATCGTCTGGATGCTGATACTGGAGCAGCATTGCAATTGAGAAGAGAGTTGCATTGGTTTAAGGAAGTAGAGAAGATTGTCCAACCATTATATAGAGAAATGAGGAACTCTGATGGAAAAACACCTCAAGCTCTATTCACTGAGGAACACAAGGAATTATTACGAGAAGGTGAAAAGTGGATGAAAGGCACCGCATCATCATGTATGGTGGTTGCGACGCTCATTGCCACTGTAATGTTTGCTGTTTTCTCAACTGTTCCTGGTGGCTACAACAATGCAACTGGTCTTCCAATATTCCTTAAATCAAAGGTCTTCATTGTTTTTGCCATATCAGATGCAATATCACTCATCTCCTCTGCTACTTCAATCTTGAGTTTTCTATCGATACTTACATCACGATATACTGAAGGAGATTTCCTCCACTTATTACCAAAACAATTGATTGTGGGGCTTGCAACACTTTTCATCTCTATAGCTACCATGATGATCACATTTGTTGCCTCTCTAGTTATCGTACTTGGTCACGGGTTTATAGGGATAAAGGTTCCAATAGCTTTGGTTGCTGGCATTCCAGTTAGTCTTTATGCTTTGCTTCAATTTCCTCTTCTTGCCGAGATGATCAGTCAAGCATATCTTTCAAGGCTTTCTTTTCGTCGTAGTAACCTTCTGTTGCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

354

Amino Acids

39.6

Weight (kDa)

8.69

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 186 - 300 3.5e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 191, 330
AarI CACCTGC 2 cut(s) 41, 388
Acc36I ACCTGC 2 cut(s) 41, 388
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 2 cut(s) 84, 900
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 5 cut(s) 105, 283, 750, 980, 1023
AjnI CCWGG 1 cut(s) 643
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 5 cut(s) 70, 373, 515, 860, 938
AluI AGCT 5 cut(s) 70, 373, 515, 860, 938
ApeKI GCWGC 3 cut(s) 152, 365, 410
Asp700I GAANNNNTTC 1 cut(s) 278
AsuHPI GGTGA 3 cut(s) 22, 120, 566
BanI GGYRCC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 662, 688
BbvI GCAGC 3 cut(s) 139, 352, 422
BccI CCATC 2 cut(s) 20, 491
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 2 cut(s) 870, 1002
BfaI CTAG 1 cut(s) 890
BfmI CTRYAG 2 cut(s) 252, 855
BfuAI ACCTGC 2 cut(s) 41, 388
BisI GCNGC 3 cut(s) 153, 366, 411
BlsI GCNGC 3 cut(s) 154, 367, 412
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 574, 930
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 4 cut(s) 332, 385, 587, 709
BpiI GAAGAC 2 cut(s) 662, 688
BplI GAGNNNNNCTC 2 cut(s) 786, 818
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 495, 775
Bsa29I ATCGAT 1 cut(s) 767
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 409, 670, 956
Bse3DI GCAATG 2 cut(s) 413, 606
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 767
BseGI GGATG 2 cut(s) 400, 570
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 2 cut(s) 413, 606
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 3 cut(s) 409, 670, 956
BseRI GAGGAG 1 cut(s) 727
BseXI GCAGC 3 cut(s) 139, 352, 422
BshNI GGYRCC 1 cut(s) 572
BshVI ATCGAT 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 162
BsmI GAATGC 1 cut(s) 951
Bsp143I GATC 4 cut(s) 125, 194, 870, 1002
BspACI CCGC 1 cut(s) 576
BspCNI CTCAG 1 cut(s) 517
BspDI ATCGAT 1 cut(s) 767
BspLI GGNNCC 2 cut(s) 574, 930
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 2 cut(s) 41, 388
BspT107I GGYRCC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 413, 606
BsrI ACTGG 3 cut(s) 409, 670, 956
BssMI GATC 4 cut(s) 125, 194, 870, 1002
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 144, 616, 640
Bst6I CTCTTC 2 cut(s) 421, 993
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 375, 837, 949
BstDEI CTNAG 1 cut(s) 525
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 400, 570
BstKTI GATC 4 cut(s) 128, 197, 873, 1005
BstMBI GATC 4 cut(s) 125, 194, 870, 1002
BstMWI GCNNNNNNNGC 2 cut(s) 374, 944
BstNI CCWGG 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 2 cut(s) 252, 855
BstV1I GCAGC 3 cut(s) 139, 352, 422
BstV2I GAAGAC 2 cut(s) 662, 688
BstXI CCANNNNNNTGG 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 767
BsuTUI ATCGAT 1 cut(s) 767
BtsCI GGATG 2 cut(s) 400, 570
BtsI GCAGTG 2 cut(s) 249, 261
BtsIMutI CAGTG 4 cut(s) 249, 261, 522, 612
BveI ACCTGC 2 cut(s) 41, 388
Cac8I GCNNGC 3 cut(s) 375, 837, 949
ClaI ATCGAT 1 cut(s) 767
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 83, 899
CviAII CATG 3 cut(s) 53, 585, 865
CviJI RGCY 9 cut(s) 70, 365, 373, 515, 651, 835, 860, 938, 1027
CviKI_1 RGCY 9 cut(s) 70, 365, 373, 515, 651, 835, 860, 938, 1027
CviQI GTAC 2 cut(s) 83, 899
DdeI CTNAG 1 cut(s) 525
DpnI GATC 4 cut(s) 127, 196, 872, 1004
DpnII GATC 4 cut(s) 125, 194, 870, 1002
Eam1104I CTCTTC 2 cut(s) 421, 993
EarI CTCTTC 2 cut(s) 421, 993
Eco57I CTGAAG 1 cut(s) 810
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 643
FaeI CATG 3 cut(s) 56, 588, 868
FalI AAGNNNNNCTT 4 cut(s) 1002, 1034, 1015, 1047
FatI CATG 3 cut(s) 52, 584, 864
FbaI TGATCA 2 cut(s) 870, 1002
Fnu4HI GCNGC 3 cut(s) 153, 366, 411
FokI GGATG 2 cut(s) 407, 577
Fsp4HI GCNGC 3 cut(s) 153, 366, 411
FspBI CTAG 1 cut(s) 890
GluI GCNGC 3 cut(s) 153, 366, 411
GsuI CTGGAG 1 cut(s) 426
HgaI GACGC 1 cut(s) 610
Hin1II CATG 3 cut(s) 56, 588, 868
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 1 cut(s) 101
HphI GGTGA 3 cut(s) 22, 120, 566
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 496, 718
Hpy188III TCNNGA 3 cut(s) 392, 754, 780
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 604, 1041
HpyAV CCTTC 3 cut(s) 545, 785, 1058
HpyCH4III ACNGT 3 cut(s) 144, 616, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 944
HpyF3I CTNAG 1 cut(s) 525
Hsp92II CATG 3 cut(s) 56, 588, 868
Ksp22I TGATCA 2 cut(s) 870, 1002
Kzo9I GATC 4 cut(s) 125, 194, 870, 1002
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 139, 352, 422
LweI GCATC 4 cut(s) 332, 385, 587, 709
MaeI CTAG 1 cut(s) 890
MaeIII GTNAC 3 cut(s) 28, 905, 1043
MalI GATC 4 cut(s) 127, 196, 872, 1004
MboI GATC 4 cut(s) 125, 194, 870, 1002
MboII GAAGA 5 cut(s) 438, 469, 662, 688, 980
MfeI CAATTG 2 cut(s) 419, 821
MluCI AATT 7 cut(s) 96, 158, 296, 419, 539, 821, 980
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 9 cut(s) 142, 296, 480, 519, 520, 748, 812, 895, 996
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 3 cut(s) 24, 444, 684
MslI CAYNNNNRTG 3 cut(s) 254, 583, 617
MspA1I CMGCKG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 2 cut(s) 419, 821
Mva1269I GAATGC 1 cut(s) 951
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 374, 944
NdeII GATC 4 cut(s) 125, 194, 870, 1002
NlaIII CATG 3 cut(s) 56, 588, 868
NlaIV GGNNCC 2 cut(s) 574, 930
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 2 cut(s) 28, 905
OliI CACNNNNGTG 1 cut(s) 254
PaqCI CACCTGC 2 cut(s) 41, 388
PctI GAATGC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 154, 367, 412
PsiI TTATAA 2 cut(s) 191, 330
Psp6I CCWGG 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 574, 930
PstI CTGCAG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 2 cut(s) 84, 900
RsaNI GTAC 2 cut(s) 83, 899
RseI CAYNNNNRTG 3 cut(s) 254, 583, 617
SaqAI TTAA 3 cut(s) 24, 444, 684
SatI GCNGC 3 cut(s) 153, 366, 411
Sau3AI GATC 4 cut(s) 125, 194, 870, 1002
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 645
SfaNI GCATC 4 cut(s) 332, 385, 587, 709
SfcI CTRYAG 2 cut(s) 252, 855
SmiMI CAYNNNNRTG 3 cut(s) 254, 583, 617
SmlI CTYRAG 2 cut(s) 510, 754
SmoI CTYRAG 2 cut(s) 510, 754
Sse9I AATT 7 cut(s) 96, 158, 296, 419, 539, 821, 980
SsiI CCGC 1 cut(s) 576
SspI AATATT 2 cut(s) 22, 678
SspMI CTAG 1 cut(s) 890
StyD4I CCNGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 144, 616, 640
TaqI TCGA 2 cut(s) 124, 767
TasI AATT 7 cut(s) 96, 158, 296, 419, 539, 821, 980
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 24, 444, 684
Tru9I TTAA 3 cut(s) 24, 444, 684
TscAI CASTG 4 cut(s) 256, 261, 529, 619
TseFI GTSAC 2 cut(s) 28, 905
TseI GCWGC 3 cut(s) 152, 365, 410
Tsp45I GTSAC 2 cut(s) 28, 905
TspDTI ATGAA 6 cut(s) 69, 309, 347, 581, 688, 838
TspRI CASTG 4 cut(s) 256, 261, 529, 619
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 890
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.