Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

16561884 .. 16562818

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCAGAGGATTTCCAGGAGGAACCTGCACATGAAGTAGAAGGGCCATTTGAAAGCAGGCTGCAGACATCTCATCCATTACCAGAAGGCCTGGGAGCACAAGTGATAGCTCTCTTCACGAGTACTTTTCGCGAACCAAAGAAGATAGATAATAAAATTCCACCAAAAGTACAAGCAACAACACCTGCTAAATGGGTTCAGAGTGCTCCAACTCAAGAACGTACAAATATATCTGGCGATGTACTAAGAAAAGATCAGAAGGATGTTACACATACTCCAGAAAACAATGCCACAGCAACACCACCTATCATAAACACCAACCTAGTTCCGTACGTGACACTACATCTTGCTGCTCTGAATGGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACGTACACTTCTTGTTGAGGAGCTAGTAAAATGGATGACACCAAATGACCTTGAATTGAAGAATGATGTAGGAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTATCAAAAGGATTGCTGAGGTAATGGTGGATATTAACCCAAGATTACCTCAGATCCGAGGTACTAAAGATCTAACACCTCTTCATATGGCTACATTGCTAGGCCACAAAGAAATTGTATGGTATCTATACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

235

Amino Acids

26.14

Weight (kDa)

6.18

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	114 - 201	7.9e-08	Ankyrin repeats (3 copies)
Ank_2	PF12796	163 - 234	4.5e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	34, 193
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	619
AcsI	RAATTY	2 cut(s)	156, 382
AfaI	GTAC	7 cut(s)	124, 171, 223, 243, 332, 472, 634
AgsI	TTSAA	3 cut(s)	53, 521, 526
AjnI	CCWGG	2 cut(s)	15, 90
AluBI	AGCT	4 cut(s)	110, 407, 458, 490
AluI	AGCT	4 cut(s)	110, 407, 458, 490
Alw21I	GWGCWC	2 cut(s)	100, 208
AlwI	GGATC	1 cut(s)	619
AlwNI	CAGNNNCTG	2 cut(s)	407, 440
AoxI	GGCC	3 cut(s)	44, 88, 673
ApeKI	GCWGC	4 cut(s)	61, 350, 455, 560
ApoI	RAATTY	2 cut(s)	156, 382
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	374
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	100, 208
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	48, 337, 467, 547
BciT130I	CCWGG	2 cut(s)	17, 92
BfaI	CTAG	4 cut(s)	323, 378, 491, 671
BfmI	CTRYAG	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	34, 193
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	4 cut(s)	62, 351, 456, 561
BlsI	GCNGC	4 cut(s)	63, 352, 457, 562
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	17, 92
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	17, 92
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	91, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 259, 289
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	2 cut(s)	450, 665
BseBI	CCWGG	2 cut(s)	17, 92
BseDI	CCNNGG	2 cut(s)	91, 628
BseGI	GGATG	4 cut(s)	73, 268, 375, 507
BseMI	GCAATG	2 cut(s)	450, 665
BseMII	CTCAG	2 cut(s)	579, 635
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	4 cut(s)	48, 337, 467, 547
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	46, 90, 675
BsiHKAI	GWGCWC	2 cut(s)	100, 208
BsiWI	CGTACG	1 cut(s)	330
BsnI	GGCC	3 cut(s)	46, 90, 675
Bsp1286I	GDGCHC	2 cut(s)	100, 208
Bsp143I	GATC	4 cut(s)	253, 420, 624, 640
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	3 cut(s)	46, 90, 675
BspCNI	CTCAG	2 cut(s)	580, 634
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	34, 193
BspPI	GGATC	1 cut(s)	619
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	450, 665
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	91, 628
BssMI	GATC	4 cut(s)	253, 420, 624, 640
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	17, 92
Bst6I	CTCTTC	3 cut(s)	119, 450, 657
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	245, 417, 588, 621
BstF5I	GGATG	4 cut(s)	73, 268, 375, 507
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	256, 423, 627, 643
BstMBI	GATC	4 cut(s)	253, 420, 624, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 413, 461
BstNI	CCWGG	2 cut(s)	17, 92
BstSCI	CCNGG	2 cut(s)	15, 90
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	48, 337, 467, 547
BstX2I	RGATCY	2 cut(s)	624, 640
BstYI	RGATCY	2 cut(s)	624, 640
BsuRI	GGCC	3 cut(s)	46, 90, 675
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	73, 268, 375, 507
BtuMI	TCGCGA	1 cut(s)	132
BveI	ACCTGC	2 cut(s)	34, 193
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	2 cut(s)	407, 440
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
CviAII	CATG	1 cut(s)	32
CviQI	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
DdeI	CTNAG	4 cut(s)	245, 417, 588, 621
DpnI	GATC	4 cut(s)	255, 422, 626, 642
DpnII	GATC	4 cut(s)	253, 420, 624, 640
Eam1104I	CTCTTC	3 cut(s)	119, 450, 657
EarI	CTCTTC	3 cut(s)	119, 450, 657
Eco147I	AGGCCT	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	15, 90
FaeI	CATG	1 cut(s)	35
FaiI	YATR	8 cut(s)	33, 230, 273, 311, 657, 659, 691, 700
FatI	CATG	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	657
Fnu4HI	GCNGC	4 cut(s)	62, 351, 456, 561
FokI	GGATG	4 cut(s)	60, 275, 382, 514
Fsp4HI	GCNGC	4 cut(s)	62, 351, 456, 561
FspBI	CTAG	4 cut(s)	323, 378, 491, 671
GluI	GCNGC	4 cut(s)	62, 351, 456, 561
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	46, 90, 675
Hin1II	CATG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	7 cut(s)	7, 201, 258, 357, 436, 624, 629
Hpy188III	TCNNGA	4 cut(s)	118, 131, 215, 278
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	35, 80, 253
HpyCH4IV	ACGT	3 cut(s)	220, 333, 469
HpyCH4V	TGCA	4 cut(s)	29, 64, 391, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 413, 461
HpyF3I	CTNAG	4 cut(s)	245, 417, 588, 621
HpySE526I	ACGT	3 cut(s)	220, 333, 469
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	253, 420, 624, 640
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	95, 211, 487
Lsp1109I	GCAGC	4 cut(s)	48, 337, 467, 547
MaeI	CTAG	4 cut(s)	323, 378, 491, 671
MaeII	ACGT	3 cut(s)	220, 333, 469
MaeIII	GTNAC	3 cut(s)	265, 334, 362
MalI	GATC	4 cut(s)	255, 422, 626, 642
MboI	GATC	4 cut(s)	253, 420, 624, 640
MboII	GAAGA	5 cut(s)	106, 154, 437, 538, 644
MflI	RGATCY	2 cut(s)	624, 640
MhlI	GDGCHC	2 cut(s)	100, 208
MluCI	AATT	5 cut(s)	156, 382, 392, 521, 684
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	13, 405, 478, 583, 623, 630, 660
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	17, 92
MvaI	CCWGG	2 cut(s)	17, 92
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	397, 413, 461
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	4 cut(s)	253, 420, 624, 640
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	334, 362
NruI	TCGCGA	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	450
Pfl23II	CGTACG	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	63, 352, 457, 562
Ppu21I	YACGTR	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	15, 90
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	15, 90
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	407, 440
PsuI	RGATCY	2 cut(s)	624, 640
PvuII	CAGCTG	1 cut(s)	458
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	7 cut(s)	124, 171, 223, 243, 332, 472, 634
RsaNI	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	4 cut(s)	62, 351, 456, 561
Sau3AI	GATC	4 cut(s)	253, 420, 624, 640
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	17, 92
SduI	GDGCHC	2 cut(s)	100, 208
SfcI	CTRYAG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	156, 382, 392, 521, 684
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	4 cut(s)	323, 378, 491, 671
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	15, 90
TaiI	ACGT	3 cut(s)	223, 336, 472
TasI	AATT	5 cut(s)	156, 382, 392, 521, 684
TatI	WGTACW	3 cut(s)	122, 169, 241
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	334, 362
TseI	GCWGC	4 cut(s)	61, 350, 455, 560
Tsp45I	GTSAC	2 cut(s)	334, 362
TspDTI	ATGAA	2 cut(s)	48, 644
TspGWI	ACGGA	1 cut(s)	318
XapI	RAATTY	2 cut(s)	156, 382
XspI	CTAG	4 cut(s)	323, 378, 491, 671
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.