Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

13095639 .. 13098776

Gene Structure 3138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCAGAGGATTTCCAGGAGGAACCTGCACATGAAGTAGAAGGGCCATTTGAAAGCAGGCTGCAGACATCTCATCCATTACCAGAAGGCCTGGGAGCACAAGTGATAGCTCTCTTCACGAGTACTTTTCGCGAACCAAAGAAGATAGATAATAAAATTCCACCAAAAGTACAAGCAACAACACCTGCTAAATGGGCTCAGAGTGCTCCAACTCAAGAACGTACAAATATATCTGGCGATGTACTAAGAAAAGATCAGAAGGATGTTACACATACTCCAGAAAACAATGTCACAGCAACACCAACTATCATAAACACCAACCTAGTTCCGTACGTGACACTACATCTTTCTGCTCTGAATTGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACGTACACTTTTTGTTGAGGAGCTAGTAAAATGGATGACACCAAATGACCTTGAATTGAAGAATGATGTAGGAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTATCAAAAGGATTGCTGAGGTAATGGTGGATATTAACCCAAGATTACCTCAGATCCGAGGTACTAAAGATCTAACACCTCTTCATATGGCTACATTGCTAGGCCACAAAGAAATTGTATGGTATCTATACGATAAGACAATTTTGACAGAACAAGATTACATAGGGCTTCTTATTTCTGCCATAACAGCAGATCTTTATGCACTGGATATAATTCAAAAGCACCCTGAAATGGCTTTTGCTCGAGATAGAAATGGAGAGACAGCACTACATGTATTGGCTCGAAAGCCTTCAGCATGTTATAGTGGAAGTCAGCTGGGATCTTTGCAACGATGGATAACTTCGTATGTGGTTATGGATATAGTTGAACAACACCCTGAAATGACTTCTGTTCAAGATGAAATTGTGGAGACAACACTCCAAATAGTGGAGCCTTCGGCATGTTATAGTGGAAATCAGCTGGGACTTTGGAAACGATTGATATTATCTGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

355

Amino Acids

39.62

Weight (kDa)

5.72

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	142 - 201	7.7e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	149 - 237	9.6e-10	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	34, 193
AccB7I	CCANNNNNTGG	1 cut(s)	997
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	2 cut(s)	619, 898
AcsI	RAATTY	2 cut(s)	156, 382
AcuI	CTGAAG	1 cut(s)	846
AfaI	GTAC	7 cut(s)	124, 171, 223, 243, 332, 472, 634
AfiI	CCNNNNNNNGG	2 cut(s)	802, 997
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	6 cut(s)	53, 521, 526, 788, 938, 965
AjnI	CCWGG	2 cut(s)	15, 90
AluBI	AGCT	6 cut(s)	110, 407, 458, 490, 886, 1030
AluI	AGCT	6 cut(s)	110, 407, 458, 490, 886, 1030
Alw21I	GWGCWC	2 cut(s)	100, 208
Alw26I	GTCTC	2 cut(s)	824, 974
AlwI	GGATC	2 cut(s)	619, 898
AlwNI	CAGNNNCTG	2 cut(s)	407, 440
Ama87I	CYCGRG	1 cut(s)	813
AoxI	GGCC	3 cut(s)	44, 88, 673
ApeKI	GCWGC	3 cut(s)	61, 455, 560
ApoI	RAATTY	2 cut(s)	156, 382
Asp700I	GAANNNNTTC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	100, 208
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	48, 467, 547
BccI	CCATC	1 cut(s)	897
BciT130I	CCWGG	2 cut(s)	17, 92
BcoDI	GTCTC	2 cut(s)	824, 974
BfaI	CTAG	4 cut(s)	323, 378, 491, 671
BfmI	CTRYAG	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	34, 193
BglII	AGATCT	2 cut(s)	640, 763
BisI	GCNGC	3 cut(s)	62, 456, 561
BlsI	GCNGC	3 cut(s)	63, 457, 562
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	17, 92
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	24, 1002
BmrFI	CCNGG	2 cut(s)	17, 92
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	91, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	802, 997
Bse1I	ACTGG	2 cut(s)	371, 780
Bse3DI	GCAATG	2 cut(s)	450, 665
BseBI	CCWGG	2 cut(s)	17, 92
BseDI	CCNNGG	2 cut(s)	91, 628
BseGI	GGATG	4 cut(s)	73, 268, 375, 507
BseLI	CCNNNNNNNGG	2 cut(s)	802, 997
BseMI	GCAATG	2 cut(s)	450, 665
BseMII	CTCAG	3 cut(s)	212, 579, 635
BseNI	ACTGG	2 cut(s)	371, 780
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	48, 467, 547
BseYI	CCCAGC	3 cut(s)	458, 886, 1030
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	46, 90, 675
BsiHKAI	GWGCWC	2 cut(s)	100, 208
BsiHKCI	CYCGRG	1 cut(s)	813
BsiWI	CGTACG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	2 cut(s)	802, 997
BsmAI	GTCTC	2 cut(s)	824, 974
BsmFI	GGGAC	1 cut(s)	1047
BsnI	GGCC	3 cut(s)	46, 90, 675
BsoBI	CYCGRG	1 cut(s)	813
Bsp1286I	GDGCHC	3 cut(s)	100, 199, 208
Bsp143I	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	3 cut(s)	46, 90, 675
BspCNI	CTCAG	3 cut(s)	211, 580, 634
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	24, 1002
BspMAI	CTGCAG	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	34, 193
BspPI	GGATC	2 cut(s)	619, 898
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	450, 665
BsrI	ACTGG	2 cut(s)	371, 780
BssECI	CCNNGG	2 cut(s)	91, 628
BssMI	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	17, 92
Bst6I	CTCTTC	3 cut(s)	119, 450, 657
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	5 cut(s)	198, 245, 417, 588, 621
BstF5I	GGATG	4 cut(s)	73, 268, 375, 507
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	6 cut(s)	256, 423, 627, 643, 766, 893
BstMAI	GTCTC	2 cut(s)	824, 974
BstMBI	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 758
BstNI	CCWGG	2 cut(s)	17, 92
BstNSI	RCATGY	3 cut(s)	845, 870, 1014
BstSCI	CCNGG	2 cut(s)	15, 90
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	48, 467, 547
BstX2I	RGATCY	4 cut(s)	624, 640, 763, 890
BstYI	RGATCY	4 cut(s)	624, 640, 763, 890
BsuRI	GGCC	3 cut(s)	46, 90, 675
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	73, 268, 375, 507
BtsIMutI	CAGTG	1 cut(s)	773
BtuMI	TCGCGA	1 cut(s)	132
BveI	ACCTGC	2 cut(s)	34, 193
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	2 cut(s)	407, 440
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
CviAII	CATG	4 cut(s)	32, 842, 867, 1011
CviQI	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
DdeI	CTNAG	5 cut(s)	198, 245, 417, 588, 621
DpnI	GATC	6 cut(s)	255, 422, 626, 642, 765, 892
DpnII	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
Eam1104I	CTCTTC	3 cut(s)	119, 450, 657
EarI	CTCTTC	3 cut(s)	119, 450, 657
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	15, 90
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	4 cut(s)	35, 845, 870, 1014
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	4 cut(s)	31, 841, 866, 1010
FauNDI	CATATG	1 cut(s)	657
Fnu4HI	GCNGC	3 cut(s)	62, 456, 561
FokI	GGATG	4 cut(s)	60, 275, 382, 514
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	62, 456, 561
FspBI	CTAG	4 cut(s)	323, 378, 491, 671
GluI	GCNGC	3 cut(s)	62, 456, 561
GsaI	CCCAGC	3 cut(s)	462, 890, 1034
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	46, 90, 675
Hin1II	CATG	4 cut(s)	35, 845, 870, 1014
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	7 cut(s)	7, 201, 258, 357, 436, 624, 629
Hpy188III	TCNNGA	6 cut(s)	118, 131, 215, 278, 815, 965
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	5 cut(s)	35, 80, 253, 870, 1014
HpyCH4IV	ACGT	3 cut(s)	220, 333, 469
HpyCH4V	TGCA	6 cut(s)	29, 64, 391, 455, 773, 898
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 758
HpyF3I	CTNAG	5 cut(s)	198, 245, 417, 588, 621
HpySE526I	ACGT	3 cut(s)	220, 333, 469
Hsp92II	CATG	4 cut(s)	35, 845, 870, 1014
Kzo9I	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	4 cut(s)	95, 211, 487, 1000
Lsp1109I	GCAGC	3 cut(s)	48, 467, 547
MaeI	CTAG	4 cut(s)	323, 378, 491, 671
MaeII	ACGT	3 cut(s)	220, 333, 469
MaeIII	GTNAC	4 cut(s)	265, 289, 334, 362
MalI	GATC	6 cut(s)	255, 422, 626, 642, 765, 892
MboI	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
MboII	GAAGA	5 cut(s)	106, 154, 437, 538, 644
MflI	RGATCY	4 cut(s)	624, 640, 763, 890
MhlI	GDGCHC	3 cut(s)	100, 199, 208
MluCI	AATT	9 cut(s)	156, 358, 382, 392, 521, 684, 711, 783, 972
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	13, 405, 478, 583, 623, 630, 660
MroXI	GAANNNNTTC	1 cut(s)	859
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	3 cut(s)	458, 886, 1030
MspR9I	CCNGG	2 cut(s)	17, 92
MvaI	CCWGG	2 cut(s)	17, 92
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 758
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
NlaIII	CATG	4 cut(s)	35, 845, 870, 1014
NlaIV	GGNNCC	2 cut(s)	24, 1002
NmuCI	GTSAC	3 cut(s)	289, 334, 362
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	3 cut(s)	845, 870, 1014
PaeR7I	CTCGAG	1 cut(s)	813
PaqCI	CACCTGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	841
PciSI	GCTCTTC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	859
Pfl23II	CGTACG	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	997
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	63, 457, 562
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	841
Psp6I	CCWGG	2 cut(s)	15, 90
PspFI	CCCAGC	3 cut(s)	458, 886, 1030
PspGI	CCWGG	2 cut(s)	15, 90
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	24, 1002
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	407, 440
PsuI	RGATCY	4 cut(s)	624, 640, 763, 890
PvuII	CAGCTG	3 cut(s)	458, 886, 1030
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	7 cut(s)	124, 171, 223, 243, 332, 472, 634
RsaNI	GTAC	7 cut(s)	123, 170, 222, 242, 331, 471, 633
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	62, 456, 561
Sau3AI	GATC	6 cut(s)	253, 420, 624, 640, 763, 890
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	17, 92
SduI	GDGCHC	3 cut(s)	100, 199, 208
SfcI	CTRYAG	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	813
SlaI	CTCGAG	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	213, 813
SmoI	CTYRAG	2 cut(s)	213, 813
Sse9I	AATT	9 cut(s)	156, 358, 382, 392, 521, 684, 711, 783, 972
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	4 cut(s)	323, 378, 491, 671
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	15, 90
TaiI	ACGT	3 cut(s)	223, 336, 472
TaqI	TCGA	2 cut(s)	814, 853
TasI	AATT	9 cut(s)	156, 358, 382, 392, 521, 684, 711, 783, 972
TatI	WGTACW	3 cut(s)	122, 169, 241
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	3 cut(s)	289, 334, 362
TseI	GCWGC	3 cut(s)	61, 455, 560
Tsp45I	GTSAC	3 cut(s)	289, 334, 362
TspDTI	ATGAA	3 cut(s)	48, 644, 984
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	780
Van91I	CCANNNNNTGG	1 cut(s)	997
XapI	RAATTY	2 cut(s)	156, 382
XceI	RCATGY	3 cut(s)	845, 870, 1014
XhoI	CTCGAG	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	323, 378, 491, 671
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.