Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

25618794 .. 25622694

Gene Structure 3901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGTCAGAGAAACTAACCACATCATCGCCATTTGAAGTTGAAGAAGGAGTCTCAACCCAAGAGAACTTCCCAAAAGAATCTGCAGGAGAAGTTATGCAAGAGACATGTGGACTAACCTTTGGAGGCGACAATGGCACCGCTGCCACATCCGGCAGACAGTCATTTGCAACAAGCGATGGAGGGTATAGTGCAGGTCCTCCGTCTAGCAGGACAACATGTGCAACAATAAGCTACGGAGGTTACTACAGCAGCGGTGGAACGTCTAGCTGCAGACCGACGTGTCATCCGTTACCACCTGGCCTCGGAACACCAATTATCGCAATTGTTCATAGTCCTGAATTGACGTTTGGTGGATGGGCTAATTCTACTGAAAATGTTGATGTAGAGATTGGCCATGATCAGCAACTTGATGATCTGGAGGCTACATATACTGCAGAAGAAGCCGAAAGAAAACAAAGGGAAGATGCAGCTTCCCCAGTAATAACCCACTCAGACTCCATTTCAATTTGTTGGCCACTCAGAAAATTACTTGATAGGGGAAGAAATGAGTCTCATTCCAACAACGACCATGAAACTAGTATTGCAGGACCACCAAGTGAGCATGTTCCAAATAACGTCGCAAATTCATCTAACATCATTTCGTCGGTGATAAATAGTGACCTAGTACCCCATGTTCCTCTACATCTTGCTGCTCTCAAAGGTGACTGGAATACTGCTAAAACCATCTTGCAATCAAAGCCTGGAGCTGTGAGGGCTAGGATCACAAAGGGTTCCGAAACAGCTCTTCACATCGCGGCCGGAGCTAAACATACGTACTTTGTTGAGGAGCTAGTTAAATGGATGACTGCAGAGGAGCTTGAACTGAAGAATGACGTGGAAAACACTGCCCTATTTTTTGCTGCTGTTTCTGGTATCAAAAGGATCGCTGAGGTAATGGTGGAGGTTAATCCGAGATTACCTCGGATCCGAGGCAGTAACAATTCAACAGCTCTGCATATGGCTACTTTGCTAGGGCACAGGGAGATGGTACGGTATCTTTACAGCAAGACTAAAAGAATTTTGACCTACCAGGACCGTGTGGGGCTTCTTATTGCTGCCATAACAGCAGATCTTTATGATGTAGCTCTGGATATTGTTAAACAACACCCTGAAATGGCTCTTGCTCGAGATGAAAATGAAGAGACTGCACTCCATGTAATGGCGCGAAAACCTTCAGCATATCATAATGGAAGTCAGCTTGGATTTTGGAAACGATGCATATTCTCTTTCCCCAGGAATTTCAAGCGTTCCTTTGAAGAAAAGGTAAAGCATGCACTAGCCACTGAACTTGTGAAGCAGCTGTGGAAGAAAATTCTGACATTAGAAAATGATTCCAAGATTGGTGATTTGATTAGAAAACCGTCTCGCTTACTGTTTACTGCAGCAGAGTTGGGTAACCTTGACTTTTTGATCATACTTATGAGATCATACCCCAATCTCATTTGGAAAGTTGATGAACAAAATCGAAGCATATTTCACATTGCAGTGGTTCACAGGCAGGAGAAGGTTTTCAATCTTATTTATGAATTAGGTGGATTGAAAGATTTGATAGCATCTTATAAAGATGATAACAATAACAATATGCTTCATTTGGCTGCAAAACTTGCACCTGCCAATAGACTAAATACTGATACTGGGGCAGCATTTCAACTGAGAAGAGAGTTGTTGTGGTTTAAGGAAGTTGAGAAGATCGTCCAACCGTTATACAAAGAGATGAGGAACTCTGATGGCAAAACACCTCAAATTCTATTCACTGAGGAGCACAGGGAATTACTAAAAGAAGGAGAAAAGTGGATGAAGGGTACTGCATCATCATGCATGGTTGTGGCAACCCTCATCGCCACCGTAATGTTTGCTGTTTTCTCCACTGTCCCGGGTGGCAACAACAATGAGACAGGCATGCCCATGTTCATAAAAGAAACGGCCTTCAAAATCTTTGCCATATCAGATGCAGTATCACTTGTCTCTTCTGCCACTTCGATCTTGAGTTTTCTCTCGATCCTAACCTCACGCTACACCGAAGGTGACTTCCTCCATTCTTTACCAAACAGGTTGATCGTAGGGCTTGCAACCCTATTCATCTCTATAGGTACCATGATGCTCACGTACGTTGCAACGTTATTTATTGTCCTCGGCTCTGGAAATGAAAGGATAAAAGTTCCGATAACTTTGGTTGCTGTCATTCCAGTTAGTTTCTATGCTTTGCTGCAATTTCCTCTTCTTTCGGATATGATCAGTCATGCTTATATTTCAAGAGTATCTTTTCGTTCCAGCAACCATCTCTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

776

Amino Acids

85.82

Weight (kDa)

6.49

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	227 - 314	1.8e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	276 - 350	5.3e-08	Ankyrin repeats (3 copies)
PGG	PF13962	609 - 723	2.7e-24	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1599
AarI	CACCTGC	1 cut(s)	1657
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	2 cut(s)	182, 1657
Acc65I	GGTACC	1 cut(s)	2129
AccB1I	GGYRCC	2 cut(s)	134, 2129
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AccII	CGCG	2 cut(s)	794, 1204
AciI	CCGC	3 cut(s)	138, 252, 794
AclI	AACGTT	1 cut(s)	2156
AclWI	GGATC	5 cut(s)	767, 929, 958, 971, 2032
AcoI	YGGCCR	3 cut(s)	391, 512, 795
AcsI	RAATTY	5 cut(s)	622, 1056, 1276, 1350, 1782
AcuI	CTGAAG	2 cut(s)	884, 1197
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	6 cut(s)	666, 815, 1029, 1843, 2131, 2147
AfiI	CCNNNNNNNGG	3 cut(s)	302, 1153, 1198
AflIII	ACRYGT	3 cut(s)	104, 215, 278
AhlI	ACTAGT	1 cut(s)	575
AjiI	CACGTC	2 cut(s)	279, 874
AjnI	CCWGG	4 cut(s)	295, 739, 1068, 1271
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
Alw21I	GWGCWC	1 cut(s)	1803
Alw26I	GTCTC	7 cut(s)	55, 95, 555, 1175, 1407, 1925, 2008
AlwI	GGATC	5 cut(s)	767, 929, 958, 971, 2032
Ama87I	CYCGRG	2 cut(s)	1164, 1912
AoxI	GGCC	5 cut(s)	298, 391, 512, 795, 1962
ApoI	RAATTY	5 cut(s)	622, 1056, 1276, 1350, 1782
Asp700I	GAANNNNTTC	2 cut(s)	1210, 1547
Asp718I	GGTACC	1 cut(s)	2129
AspLEI	GCGC	1 cut(s)	1204
AspS9I	GGNCC	3 cut(s)	194, 587, 1072
AsuC2I	CCSGG	2 cut(s)	1913, 1914
AsuHPI	GGTGA	4 cut(s)	658, 713, 1394, 2075
AvaI	CYCGRG	2 cut(s)	1164, 1912
AvaII	GGWCC	3 cut(s)	194, 587, 1072
BaeGI	GKGCMC	1 cut(s)	1017
BalI	TGGCCA	2 cut(s)	393, 514
BamHI	GGATCC	1 cut(s)	963
BanI	GGYRCC	2 cut(s)	134, 2129
Bbv12I	GWGCWC	1 cut(s)	1803
BbvCI	CCTCAGC	1 cut(s)	927
BccI	CCATC	6 cut(s)	170, 348, 731, 1018, 1760, 2325
BceAI	ACGGC	1 cut(s)	1977
BciT130I	CCWGG	4 cut(s)	297, 741, 1070, 1273
BclI	TGATCA	3 cut(s)	397, 1449, 2271
BcnI	CCSGG	2 cut(s)	1913, 1914
BcoDI	GTCTC	7 cut(s)	55, 95, 555, 1175, 1407, 1925, 2008
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	8 cut(s)	204, 264, 576, 662, 756, 830, 1010, 1316
BfmI	CTRYAG	7 cut(s)	81, 244, 268, 432, 846, 1419, 2124
BfuAI	ACCTGC	2 cut(s)	182, 1657
BglII	AGATCT	1 cut(s)	1108
Bme1390I	CCNGG	6 cut(s)	297, 741, 1070, 1273, 1913, 1914
Bme18I	GGWCC	3 cut(s)	194, 587, 1072
BmeT110I	CYCGRG	2 cut(s)	1164, 1912
BmgBI	CACGTC	2 cut(s)	279, 874
BmgT120I	GGNCC	3 cut(s)	194, 587, 1072
BmiI	GGNNCC	4 cut(s)	136, 772, 965, 2131
BmrFI	CCNGG	6 cut(s)	297, 741, 1070, 1273, 1913, 1914
BmrI	ACTGGG	2 cut(s)	470, 1683
BmsI	GCATC	6 cut(s)	454, 1244, 1601, 1856, 1978, 2127
BmuI	ACTGGG	2 cut(s)	470, 1683
BplI	GAGNNNNNCTC	2 cut(s)	943, 975
BpmI	CTGGAG	2 cut(s)	437, 762
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	1 cut(s)	2044
BpuMI	CCSGG	2 cut(s)	1913, 1914
BsaAI	YACGTR	2 cut(s)	813, 2145
BsaJI	CCNNGG	6 cut(s)	301, 959, 967, 1271, 1912, 2170
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 1153, 1198
Bse1I	ACTGG	4 cut(s)	476, 710, 1678, 2225
Bse3DI	GCAATG	1 cut(s)	1518
BseBI	CCWGG	4 cut(s)	297, 741, 1070, 1273
BseDI	CCNNGG	6 cut(s)	301, 959, 967, 1271, 1912, 2170
BseGI	GGATG	5 cut(s)	146, 283, 359, 846, 1839
BseLI	CCNNNNNNNGG	3 cut(s)	302, 1153, 1198
BseMI	GCAATG	1 cut(s)	1518
BseMII	CTCAG	5 cut(s)	504, 532, 918, 1682, 1785
BseNI	ACTGG	4 cut(s)	476, 710, 1678, 2225
BseRI	GAGGAG	3 cut(s)	839, 866, 1811
BseSI	GKGCMC	1 cut(s)	1017
BseX3I	CGGCCG	1 cut(s)	795
BsgI	GTGCAG	2 cut(s)	210, 1170
Bsh1236I	CGCG	2 cut(s)	794, 1204
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	5 cut(s)	300, 393, 514, 797, 1964
BshNI	GGYRCC	2 cut(s)	134, 2129
BsiEI	CGRYCG	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	1803
BsiHKCI	CYCGRG	2 cut(s)	1164, 1912
BsiSI	CCGG	3 cut(s)	150, 798, 1913
BsiWI	CGTACG	1 cut(s)	2145
BslFI	GGGAC	1 cut(s)	1895
BslI	CCNNNNNNNGG	3 cut(s)	302, 1153, 1198
BsmAI	GTCTC	7 cut(s)	55, 95, 555, 1175, 1407, 1925, 2008
BsmBI	CGTCTC	1 cut(s)	1407
BsmFI	GGGAC	1 cut(s)	1895
BsnI	GGCC	5 cut(s)	300, 393, 514, 797, 1964
BsoBI	CYCGRG	2 cut(s)	1164, 1912
Bsp1286I	GDGCHC	2 cut(s)	1017, 1803
BspACI	CCGC	3 cut(s)	138, 252, 794
BspANI	GGCC	5 cut(s)	300, 393, 514, 797, 1964
BspCNI	CTCAG	5 cut(s)	503, 531, 919, 1683, 1786
BspFNI	CGCG	2 cut(s)	794, 1204
BspLI	GGNNCC	4 cut(s)	136, 772, 965, 2131
BspMAI	CTGCAG	5 cut(s)	85, 272, 436, 850, 1423
BspMI	ACCTGC	2 cut(s)	182, 1657
BspPI	GGATC	5 cut(s)	767, 929, 958, 971, 2032
BspQI	GCTCTTC	1 cut(s)	789
BspT107I	GGYRCC	2 cut(s)	134, 2129
BsrDI	GCAATG	1 cut(s)	1518
BsrI	ACTGG	4 cut(s)	476, 710, 1678, 2225
BssECI	CCNNGG	6 cut(s)	301, 959, 967, 1271, 1912, 2170
Bst2UI	CCWGG	4 cut(s)	297, 741, 1070, 1273
Bst4CI	ACNGT	8 cut(s)	159, 1032, 1076, 1401, 1413, 1740, 1885, 1909
Bst6I	CTCTTC	5 cut(s)	789, 1173, 1690, 2011, 2262
BstAPI	GCANNNNNTGC	1 cut(s)	1643
BstBAI	YACGTR	2 cut(s)	813, 2145
BstC8I	GCNNGC	3 cut(s)	1311, 1940, 2106
BstDEI	CTNAG	5 cut(s)	490, 518, 927, 1691, 1794
BstEII	GGTNACC	1 cut(s)	1433
BstF5I	GGATG	5 cut(s)	146, 283, 359, 846, 1839
BstFNI	CGCG	2 cut(s)	794, 1204
BstHHI	GCGC	1 cut(s)	1204
BstMAI	GTCTC	7 cut(s)	55, 95, 555, 1175, 1407, 1925, 2008
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	7 cut(s)	132, 440, 736, 752, 800, 1103, 1643
BstNI	CCWGG	4 cut(s)	297, 741, 1070, 1273
BstNSI	RCATGY	5 cut(s)	108, 219, 605, 1313, 1942
BstPI	GGTNACC	1 cut(s)	1433
BstSCI	CCNGG	6 cut(s)	295, 739, 1068, 1271, 1911, 1912
BstSFI	CTRYAG	7 cut(s)	81, 244, 268, 432, 846, 1419, 2124
BstSLI	GKGCMC	1 cut(s)	1017
BstSNI	TACGTA	1 cut(s)	813
BstUI	CGCG	2 cut(s)	794, 1204
BstX2I	RGATCY	2 cut(s)	963, 1108
BstYI	RGATCY	2 cut(s)	963, 1108
BstZI	CGGCCG	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	300, 393, 514, 797, 1964
BtgZI	GCGATG	4 cut(s)	9, 189, 775, 1861
BtrI	CACGTC	2 cut(s)	279, 874
BtsCI	GGATG	5 cut(s)	146, 283, 359, 846, 1839
BtsI	GCAGTG	2 cut(s)	882, 1530
BtsIMutI	CAGTG	5 cut(s)	882, 1320, 1530, 1791, 1905
BveI	ACCTGC	2 cut(s)	182, 1657
Cac8I	GCNNGC	3 cut(s)	1311, 1940, 2106
CfoI	GCGC	1 cut(s)	1204
Cfr13I	GGNCC	3 cut(s)	194, 587, 1072
Cfr9I	CCCGGG	1 cut(s)	1912
Csp6I	GTAC	6 cut(s)	665, 814, 1028, 1842, 2130, 2146
CspCI	CAANNNNNGTGG	2 cut(s)	1309, 1344
CviQI	GTAC	6 cut(s)	665, 814, 1028, 1842, 2130, 2146
DdeI	CTNAG	5 cut(s)	490, 518, 927, 1691, 1794
DraIII	CACNNNGTG	1 cut(s)	596
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	3 cut(s)	391, 512, 795
EagI	CGGCCG	1 cut(s)	795
Eam1104I	CTCTTC	5 cut(s)	789, 1173, 1690, 2011, 2262
EarI	CTCTTC	5 cut(s)	789, 1173, 1690, 2011, 2262
EclXI	CGGCCG	1 cut(s)	795
Eco105I	TACGTA	1 cut(s)	813
Eco47I	GGWCC	3 cut(s)	194, 587, 1072
Eco52I	CGGCCG	1 cut(s)	795
Eco57I	CTGAAG	2 cut(s)	884, 1197
Eco88I	CYCGRG	2 cut(s)	1164, 1912
Eco91I	GGTNACC	1 cut(s)	1433
EcoO109I	RGGNCCY	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	1433
EcoRII	CCWGG	4 cut(s)	295, 739, 1068, 1271
EcoT22I	ATGCAT	2 cut(s)	1259, 1859
Esp3I	CGTCTC	1 cut(s)	1407
FalI	AAGNNNNNCTT	4 cut(s)	1274, 1306, 2284, 2316
FaqI	GGGAC	1 cut(s)	1895
FauNDI	CATATG	1 cut(s)	996
FbaI	TGATCA	3 cut(s)	397, 1449, 2271
FokI	GGATG	5 cut(s)	133, 270, 366, 853, 1846
FspBI	CTAG	8 cut(s)	204, 264, 576, 662, 756, 830, 1010, 1316
GlaI	GCGC	1 cut(s)	1203
GsuI	CTGGAG	2 cut(s)	437, 762
HaeIII	GGCC	5 cut(s)	300, 393, 514, 797, 1964
HapII	CCGG	3 cut(s)	150, 798, 1913
HhaI	GCGC	1 cut(s)	1204
Hin6I	GCGC	1 cut(s)	1202
HinP1I	GCGC	1 cut(s)	1202
HinfI	GANTC	5 cut(s)	48, 77, 494, 548, 1370
HpaII	CCGG	3 cut(s)	150, 798, 1913
HphI	GGTGA	4 cut(s)	658, 713, 1394, 2075
Hpy166II	GTNNAC	3 cut(s)	110, 1416, 1531
Hpy188III	TCNNGA	8 cut(s)	335, 416, 1127, 1166, 2023, 2035, 2178, 2292
Hpy8I	GTNNAC	3 cut(s)	110, 1416, 1531
Hpy99I	CGWCG	3 cut(s)	280, 620, 646
HpyAV	CCTTC	7 cut(s)	38, 1221, 1537, 1814, 1831, 1975, 2054
HpyCH4III	ACNGT	8 cut(s)	159, 1032, 1076, 1401, 1413, 1740, 1885, 1909
HpyCH4IV	ACGT	9 cut(s)	260, 278, 344, 615, 812, 873, 2144, 2148, 2156
HpyF10VI	GCNNNNNNNGC	7 cut(s)	132, 440, 736, 752, 800, 1103, 1643
HpyF3I	CTNAG	5 cut(s)	490, 518, 927, 1691, 1794
HpySE526I	ACGT	9 cut(s)	260, 278, 344, 615, 812, 873, 2144, 2148, 2156
HspAI	GCGC	1 cut(s)	1202
KpnI	GGTACC	1 cut(s)	2133
Ksp22I	TGATCA	3 cut(s)	397, 1449, 2271
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	5 cut(s)	743, 800, 826, 853, 1798
LweI	GCATC	6 cut(s)	454, 1244, 1601, 1856, 1978, 2127
MaeI	CTAG	8 cut(s)	204, 264, 576, 662, 756, 830, 1010, 1316
MaeII	ACGT	9 cut(s)	260, 278, 344, 615, 812, 873, 2144, 2148, 2156
MaeIII	GTNAC	7 cut(s)	239, 288, 656, 701, 974, 1433, 2063
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	2 cut(s)	963, 1108
MhlI	GDGCHC	2 cut(s)	1017, 1803
MlsI	TGGCCA	2 cut(s)	393, 514
MluNI	TGGCCA	2 cut(s)	393, 514
MlyI	GAGTC	3 cut(s)	57, 488, 557
MmeI	TCCRAC	2 cut(s)	582, 1759
Mox20I	TGGCCA	2 cut(s)	393, 514
Mph1103I	ATGCAT	2 cut(s)	1259, 1859
MroXI	GAANNNNTTC	2 cut(s)	1210, 1547
MscI	TGGCCA	2 cut(s)	393, 514
MseI	TTAA	4 cut(s)	834, 945, 1137, 1713
MslI	CAYNNNNRTG	6 cut(s)	1457, 1523, 1852, 1862, 1886, 1943
Msp20I	TGGCCA	2 cut(s)	393, 514
MspA1I	CMGCKG	3 cut(s)	140, 252, 1339
MspI	CCGG	3 cut(s)	150, 798, 1913
MspR9I	CCNGG	6 cut(s)	297, 741, 1070, 1273, 1913, 1914
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	4 cut(s)	297, 741, 1070, 1273
MvnI	CGCG	2 cut(s)	794, 1204
MwoI	GCNNNNNNNGC	7 cut(s)	132, 440, 736, 752, 800, 1103, 1643
NciI	CCSGG	2 cut(s)	1913, 1914
NdeI	CATATG	1 cut(s)	996
NlaIV	GGNNCC	4 cut(s)	136, 772, 965, 2131
NmeAIII	GCCGAG	1 cut(s)	2151
NmuCI	GTSAC	3 cut(s)	656, 701, 2063
NsiI	ATGCAT	2 cut(s)	1259, 1859
NspI	RCATGY	5 cut(s)	108, 219, 605, 1313, 1942
PaeI	GCATGC	2 cut(s)	1313, 1942
PaeR7I	CTCGAG	1 cut(s)	1164
PaqCI	CACCTGC	1 cut(s)	1657
PciI	ACATGT	2 cut(s)	104, 215
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	2 cut(s)	1210, 1547
PfeI	GAWTC	2 cut(s)	77, 1370
Pfl23II	CGTACG	1 cut(s)	2145
PflMI	CCANNNNNTGG	1 cut(s)	1198
PleI	GAGTC	3 cut(s)	56, 488, 556
PpsI	GAGTC	3 cut(s)	56, 488, 556
Ppu21I	YACGTR	2 cut(s)	813, 2145
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	2 cut(s)	104, 215
PsiI	TTATAA	1 cut(s)	1599
Psp1406I	AACGTT	1 cut(s)	2156
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	4 cut(s)	295, 739, 1068, 1271
PspEI	GGTNACC	1 cut(s)	1433
PspGI	CCWGG	4 cut(s)	295, 739, 1068, 1271
PspLI	CGTACG	1 cut(s)	2145
PspN4I	GGNNCC	4 cut(s)	136, 772, 965, 2131
PspPI	GGNCC	3 cut(s)	194, 587, 1072
PspPPI	RGGWCCY	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	657, 689
PstI	CTGCAG	5 cut(s)	85, 272, 436, 850, 1423
PsuI	RGATCY	2 cut(s)	963, 1108
PvuII	CAGCTG	1 cut(s)	1339
RsaI	GTAC	6 cut(s)	666, 815, 1029, 1843, 2131, 2147
RsaNI	GTAC	6 cut(s)	665, 814, 1028, 1842, 2130, 2146
RseI	CAYNNNNRTG	6 cut(s)	1457, 1523, 1852, 1862, 1886, 1943
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	4 cut(s)	834, 945, 1137, 1713
Sau96I	GGNCC	3 cut(s)	194, 587, 1072
SchI	GAGTC	3 cut(s)	57, 488, 557
ScrFI	CCNGG	6 cut(s)	297, 741, 1070, 1273, 1913, 1914
SduI	GDGCHC	2 cut(s)	1017, 1803
SfaNI	GCATC	6 cut(s)	454, 1244, 1601, 1856, 1978, 2127
SfcI	CTRYAG	7 cut(s)	81, 244, 268, 432, 846, 1419, 2124
Sfr274I	CTCGAG	1 cut(s)	1164
SinI	GGWCC	3 cut(s)	194, 587, 1072
SlaI	CTCGAG	1 cut(s)	1164
SmaI	CCCGGG	1 cut(s)	1914
SmiMI	CAYNNNNRTG	6 cut(s)	1457, 1523, 1852, 1862, 1886, 1943
SmlI	CTYRAG	2 cut(s)	1164, 2023
SmoI	CTYRAG	2 cut(s)	1164, 2023
SnaBI	TACGTA	1 cut(s)	813
SpeI	ACTAGT	1 cut(s)	575
SphI	GCATGC	2 cut(s)	1313, 1942
SsiI	CCGC	3 cut(s)	138, 252, 794
SspMI	CTAG	8 cut(s)	204, 264, 576, 662, 756, 830, 1010, 1316
StyD4I	CCNGG	6 cut(s)	295, 739, 1068, 1271, 1911, 1912
TaaI	ACNGT	8 cut(s)	159, 1032, 1076, 1401, 1413, 1740, 1885, 1909
TaiI	ACGT	9 cut(s)	263, 281, 347, 618, 815, 876, 2147, 2151, 2159
TaqI	TCGA	4 cut(s)	1165, 1504, 2018, 2036
TaqII	GACCGA	1 cut(s)	289
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	2 cut(s)	77, 1370
Tru1I	TTAA	4 cut(s)	834, 945, 1137, 1713
Tru9I	TTAA	4 cut(s)	834, 945, 1137, 1713
TscAI	CASTG	5 cut(s)	889, 1327, 1530, 1798, 1912
TseFI	GTSAC	3 cut(s)	656, 701, 2063
Tsp45I	GTSAC	3 cut(s)	656, 701, 2063
TspGWI	ACGGA	3 cut(s)	189, 249, 276
TspMI	CCCGGG	1 cut(s)	1912
TspRI	CASTG	5 cut(s)	889, 1327, 1530, 1798, 1912
Van91I	CCANNNNNTGG	1 cut(s)	1198
VpaK11BI	GGWCC	3 cut(s)	194, 587, 1072
XapI	RAATTY	5 cut(s)	622, 1056, 1276, 1350, 1782
XceI	RCATGY	5 cut(s)	108, 219, 605, 1313, 1942
XhoI	CTCGAG	1 cut(s)	1164
XmaI	CCCGGG	1 cut(s)	1912
XmnI	GAANNNNTTC	2 cut(s)	1210, 1547
XspI	CTAG	8 cut(s)	204, 264, 576, 662, 756, 830, 1010, 1316
Zsp2I	ATGCAT	2 cut(s)	1259, 1859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.