Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

64259306 .. 64259830

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATAAGAACGGACCTAGTTACCTATGCCTCTCTGCATCTTGCTGCTCTTAACGGTGACTGGATTACTGCTTGGAATCTGTTGAAAGATAATCCGGCAGCTGTGAGGGCAAAAATCACAAAGGGTTCGGAAACTGCTCTTCACATTGCTGCTGGGGCCAAACACACAATGTTTGTGGAGGAGATTGTTAAATGGATGAATAAAGAAGACCTCGAAGTGAAGAATGATGTGGAAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTGTAAAAAGGATAGCTGAGGTAATGGTGAATAAGAATGAAAGGTTACCCCGAATCCGAGGTAGTAAAGGTTCAACACCTCTCCATATGGCTGCATTGTTAGGCCATAAGGAGATGGTATGGTATCTTTACGATAAGACTGATACAATATTGAAAGACAATGATCGTGTGGAGCTTCTTATTGCCGCCATAACATCAGATCTTTACGGCAAGTATAATATAAGTCTTACGAAACTTTCTGGCCAAAACATAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

7.91

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	12 - 99	1.1e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	61 - 136	6.1e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	240, 450
AcoI	YGGCCR	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	85, 339, 418
AluBI	AGCT	3 cut(s)	101, 281, 439
AluI	AGCT	3 cut(s)	101, 281, 439
AoxI	GGCC	3 cut(s)	156, 367, 505
ApeKI	GCWGC	5 cut(s)	44, 98, 149, 254, 356
AspS9I	GGNCC	2 cut(s)	13, 156
AsuHPI	GGTGA	2 cut(s)	68, 304
AvaII	GGWCC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	5 cut(s)	31, 110, 136, 241, 343
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	17
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	6 cut(s)	45, 99, 150, 255, 357, 450
BlsI	GCNGC	6 cut(s)	46, 100, 151, 256, 358, 451
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	13, 156
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	31, 110, 136, 241, 343
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	3 cut(s)	158, 369, 507
BsiSI	CCGG	1 cut(s)	95
BsnI	GGCC	3 cut(s)	158, 369, 507
Bsp143I	GATC	2 cut(s)	427, 463
BspACI	CCGC	2 cut(s)	240, 450
BspANI	GGCC	3 cut(s)	158, 369, 507
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	427, 463
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	430, 466
BstMBI	GATC	2 cut(s)	427, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 155
BstPI	GGTNACC	1 cut(s)	309
BstV1I	GCAGC	5 cut(s)	31, 110, 136, 241, 343
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	158, 369, 507
BtsCI	GGATG	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	13, 156
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviJI	RGCY	7 cut(s)	101, 158, 281, 356, 369, 439, 507
CviKI_1	RGCY	7 cut(s)	101, 158, 281, 356, 369, 439, 507
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	429, 465
DpnII	GATC	2 cut(s)	427, 463
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	13
Eco91I	GGTNACC	1 cut(s)	309
EcoO65I	GGTNACC	1 cut(s)	309
FaiI	YATR	9 cut(s)	27, 351, 353, 372, 385, 455, 480, 485, 515
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	45, 99, 150, 255, 357, 450
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	6 cut(s)	45, 99, 150, 255, 357, 450
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	6 cut(s)	45, 99, 150, 255, 357, 450
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	158, 369, 507
HapII	CCGG	1 cut(s)	95
HinfI	GANTC	2 cut(s)	76, 318
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	68, 304
Hpy188I	TCNGA	3 cut(s)	130, 323, 463
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	37, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 155
HpyF3I	CTNAG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	427, 463
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	5 cut(s)	46, 108, 138, 249, 489
Lsp1109I	GCAGC	5 cut(s)	31, 110, 136, 241, 343
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	19, 56, 309
MalI	GATC	2 cut(s)	429, 465
MboI	GATC	2 cut(s)	427, 463
MboII	GAAGA	3 cut(s)	131, 218, 232
MflI	RGATCY	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	507
MluNI	TGGCCA	1 cut(s)	507
MnlI	CCTC	7 cut(s)	40, 99, 172, 221, 277, 317, 354
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	2 cut(s)	51, 189
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	107, 155
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	427, 463
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	76, 318
PkrI	GCNGC	6 cut(s)	46, 100, 151, 256, 358, 451
PspEI	GGTNACC	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	13, 156
PsrI	GAACNNNNNNTAC	2 cut(s)	319, 351
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	51, 189
SatI	GCNGC	6 cut(s)	45, 99, 150, 255, 357, 450
Sau3AI	GATC	2 cut(s)	427, 463
Sau96I	GGNCC	2 cut(s)	13, 156
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	13
SsiI	CCGC	2 cut(s)	240, 450
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	76, 318
Tru1I	TTAA	2 cut(s)	51, 189
Tru9I	TTAA	2 cut(s)	51, 189
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	5 cut(s)	44, 98, 149, 254, 356
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	212, 318
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	13
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.