Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

63876208 .. 63883107

Gene Structure 6900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTTTGTGGAGGAGATTGTTAAATGGATGAATAAAAAAGACCTCGAAGTGAAGAATGATGTGGAAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTGTAAAAAGGATAGCTGAGGTAATGGTGAATAAGAATGAAAGGTTACCCCGAATCCGAGGTAGTAAAGGTTCAACACCTCTCCATATGGCTGCATTGTTAGGCCATAAGGAGATGGTATGGTATCTTTACGATAAGACTGATACAATTTTGACAGACAATGATCATGTAGCACTGCATATTATCCAAAAGCACCCGGAAATGGCTCTGGCCCGTGATGAGAATGGAGAGACTGCACTTCATATAATGGCCCGAAAACCTTTAGCATATTGCAGTCGACATCAGCTCGAAATTTGGAAACGGTGCTTATTTTCAGTTACCAATATTAAGGTTACCTGCGAAAAAGGTATCATGCATGAACTTGTGGAACAGCTGTGGAATAAAGTACTGACATTAGAAATTGATTCAAAGATAAGCGATTTTATTCGAGCACCCTCTCGCTTATTGTTTAGTGCTGCCGAATTAGGGAACATTGACTTTCTGATTATACTTATGAGATCATACCCCAATCTTATTTGGAAACTTGATGAGCAAAATCGAAGCATATTCCACACTGCAGTGGTTCACAGGCAGGAGAAAGTTTTCAGCCTCATTTATGAATTAGGTGGAATAAAAGATTTGATAGCATCTTATAAAGATGATGACGATAATAATATGCTTCATTTGGCTGCAAAGCTTGCACCTGCCAATCGTTTGGATGCTGATACTGGAGCAGCATTGCAATTGAGAAGAGAGTTGCATTGGTTTAAGGAAGTGGAGAAGATTGTTCAACCATTATATAGAGAAATGAGGAACTCTGATGGAAAAACACCTCAAGCTCTATTCACTGAGGAACACAAGGAATTATTAAGAGAAGGTGAAAAGTGGATGAAAGGCACTGCATCATCATGTATGGTGGTTGCGACGCTCATTGCCACTGTAATGTTTGCTGTTTCCTCAACTGTTCCTGGTGGCTACAACAATGCAACTGGCCTTCCAATATTCCTTAAATCAAAGGTCTTCATTGTTTTTGCCATATCAGATGCAGTATCACTCATCTCCTCTGCTACTTCAATCTTGAGTTTTCTATCGATACTTACATCACGATATACTGAAGGAGATTTCCTCCACTTATTACCAAAACAATTGATTGTGGGGCTTGCAACACTTTTCATCTCTATAGCTACCATGATGATCACATTCGTTGCCTCTCTAGTTATCGTACTTGGTCACGGGTTTATAGGGATAAAGGTTCCAATAGCTTTGGTCGCTGGCATTCCAGTTAGTCTTTATGCTTTGCTTCAATTTCCTCTTCTTGCTGAGATGATCAGTCAAGCATATCTTTCAAGACTTTCTTTTCGTCGTAGTAACCTTCTGTTGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

487

Amino Acids

54.91

Weight (kDa)

8.64

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	5 - 80	4e-10	Ankyrin repeats (3 copies)
PGG	PF13962	319 - 433	3.2e-24	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AarI	CACCTGC	1 cut(s)	787
Acc36I	ACCTGC	2 cut(s)	440, 787
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	1209
AfaI	GTAC	2 cut(s)	483, 1299
AfiI	CCNNNNNNNGG	2 cut(s)	298, 561
AgsI	TTSAA	6 cut(s)	171, 504, 866, 1149, 1379, 1422
AjnI	CCWGG	1 cut(s)	1042
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	7 cut(s)	113, 382, 469, 772, 914, 1259, 1337
AluI	AGCT	7 cut(s)	113, 382, 469, 772, 914, 1259, 1337
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	4 cut(s)	199, 306, 345, 1066
ApeKI	GCWGC	5 cut(s)	86, 188, 551, 764, 809
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	1416, 1448
Asp700I	GAANNNNTTC	1 cut(s)	677
AspS9I	GGNCC	2 cut(s)	307, 346
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	136, 965
BbsI	GAAGAC	1 cut(s)	1087
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	73, 175, 538, 751, 821
BccI	CCATC	2 cut(s)	205, 890
BciT130I	CCWGG	1 cut(s)	1044
BclI	TGATCA	3 cut(s)	259, 1269, 1401
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	1289
BfmI	CTRYAG	2 cut(s)	651, 1254
BfuAI	ACCTGC	2 cut(s)	440, 787
BisI	GCNGC	5 cut(s)	87, 189, 552, 765, 810
BlsI	GCNGC	5 cut(s)	88, 190, 553, 766, 811
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	2 cut(s)	293, 1044
BmgT120I	GGNCC	2 cut(s)	307, 346
BmiI	GGNNCC	1 cut(s)	1329
BmrFI	CCNGG	2 cut(s)	293, 1044
BmsI	GCATC	4 cut(s)	731, 784, 986, 1108
BpiI	GAAGAC	1 cut(s)	1087
BplI	GAGNNNNNCTC	2 cut(s)	1185, 1217
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	894, 1174
BpuMI	CCSGG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	1166
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 561
Bse1I	ACTGG	3 cut(s)	808, 1069, 1355
Bse3DI	GCAATG	2 cut(s)	812, 1005
BseBI	CCWGG	1 cut(s)	1044
BseCI	ATCGAT	1 cut(s)	1166
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	33, 799, 969
BseLI	CCNNNNNNNGG	2 cut(s)	298, 561
BseMI	GCAATG	2 cut(s)	812, 1005
BseMII	CTCAG	3 cut(s)	105, 915, 1386
BseNI	ACTGG	3 cut(s)	808, 1069, 1355
BseRI	GAGGAG	2 cut(s)	26, 1126
BseXI	GCAGC	5 cut(s)	73, 175, 538, 751, 821
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	201, 308, 347, 1068
BshVI	ATCGAT	1 cut(s)	1166
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	298, 561
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	1350
BsnI	GGCC	4 cut(s)	201, 308, 347, 1068
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	259, 593, 1269, 1401
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	4 cut(s)	201, 308, 347, 1068
BspCNI	CTCAG	3 cut(s)	106, 916, 1387
BspDI	ATCGAT	1 cut(s)	1166
BspLI	GGNNCC	1 cut(s)	1329
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	2 cut(s)	440, 787
BsrDI	GCAATG	2 cut(s)	812, 1005
BsrI	ACTGG	3 cut(s)	808, 1069, 1355
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	4 cut(s)	259, 593, 1269, 1401
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	3 cut(s)	399, 1015, 1039
Bst6I	CTCTTC	2 cut(s)	820, 1392
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstC8I	GCNNGC	3 cut(s)	774, 1236, 1348
BstDEI	CTNAG	3 cut(s)	114, 924, 1395
BstEII	GGTNACC	2 cut(s)	141, 427
BstF5I	GGATG	3 cut(s)	33, 799, 969
BstKTI	GATC	4 cut(s)	262, 596, 1272, 1404
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	259, 593, 1269, 1401
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 1343
BstNI	CCWGG	1 cut(s)	1044
BstPI	GGTNACC	2 cut(s)	141, 427
BstSCI	CCNGG	2 cut(s)	291, 1042
BstSFI	CTRYAG	2 cut(s)	651, 1254
BstV1I	GCAGC	5 cut(s)	73, 175, 538, 751, 821
BstV2I	GAAGAC	1 cut(s)	1087
BstXI	CCANNNNNNTGG	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	1166
BsuRI	GGCC	4 cut(s)	201, 308, 347, 1068
BsuTUI	ATCGAT	1 cut(s)	1166
BtsCI	GGATG	3 cut(s)	33, 799, 969
BtsI	GCAGTG	4 cut(s)	269, 648, 660, 972
BtsIMutI	CAGTG	6 cut(s)	269, 648, 660, 921, 972, 1011
BveI	ACCTGC	2 cut(s)	440, 787
Cac8I	GCNNGC	3 cut(s)	774, 1236, 1348
Cfr13I	GGNCC	2 cut(s)	307, 346
ClaI	ATCGAT	1 cut(s)	1166
CseI	GACGC	1 cut(s)	1009
Csp6I	GTAC	2 cut(s)	482, 1298
CviAII	CATG	5 cut(s)	263, 448, 452, 984, 1264
CviQI	GTAC	2 cut(s)	482, 1298
DdeI	CTNAG	3 cut(s)	114, 924, 1395
DpnI	GATC	4 cut(s)	261, 595, 1271, 1403
DpnII	GATC	4 cut(s)	259, 593, 1269, 1401
Eam1104I	CTCTTC	2 cut(s)	820, 1392
EarI	CTCTTC	2 cut(s)	820, 1392
Eco57I	CTGAAG	1 cut(s)	1209
Eco91I	GGTNACC	2 cut(s)	141, 427
EcoO65I	GGTNACC	2 cut(s)	141, 427
EcoRII	CCWGG	1 cut(s)	1042
EcoT22I	ATGCAT	1 cut(s)	453
FaeI	CATG	5 cut(s)	266, 451, 455, 987, 1267
FalI	AAGNNNNNCTT	4 cut(s)	1401, 1433, 1414, 1446
FatI	CATG	5 cut(s)	262, 447, 451, 983, 1263
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	3 cut(s)	259, 1269, 1401
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	87, 189, 552, 765, 810
FokI	GGATG	3 cut(s)	40, 806, 976
Fsp4HI	GCNGC	5 cut(s)	87, 189, 552, 765, 810
FspBI	CTAG	1 cut(s)	1289
GluI	GCNGC	5 cut(s)	87, 189, 552, 765, 810
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	4 cut(s)	201, 308, 347, 1068
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	1009
Hin1II	CATG	5 cut(s)	266, 451, 455, 987, 1267
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	2 cut(s)	150, 500
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	136, 965
Hpy166II	GTNNAC	2 cut(s)	374, 661
Hpy188I	TCNGA	4 cut(s)	155, 579, 895, 1117
Hpy188III	TCNNGA	3 cut(s)	1153, 1179, 1422
Hpy8I	GTNNAC	2 cut(s)	374, 661
Hpy99I	CGWCG	2 cut(s)	1003, 1440
HpyAV	CCTTC	4 cut(s)	944, 1079, 1184, 1457
HpyCH4III	ACNGT	3 cut(s)	399, 1015, 1039
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 1343
HpyF3I	CTNAG	3 cut(s)	114, 924, 1395
Hsp92II	CATG	5 cut(s)	266, 451, 455, 987, 1267
Ksp22I	TGATCA	3 cut(s)	259, 1269, 1401
Kzo9I	GATC	4 cut(s)	259, 593, 1269, 1401
LmnI	GCTCC	1 cut(s)	806
Lsp1109I	GCAGC	5 cut(s)	73, 175, 538, 751, 821
LweI	GCATC	4 cut(s)	731, 784, 986, 1108
MaeI	CTAG	1 cut(s)	1289
MaeIII	GTNAC	5 cut(s)	141, 412, 427, 1304, 1442
MalI	GATC	4 cut(s)	261, 595, 1271, 1403
MboI	GATC	4 cut(s)	259, 593, 1269, 1401
MboII	GAAGA	5 cut(s)	64, 837, 868, 1087, 1379
MfeI	CAATTG	2 cut(s)	818, 1220
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	9 cut(s)	243, 387, 495, 557, 695, 818, 938, 1220, 1379
Mph1103I	ATGCAT	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	5 cut(s)	21, 423, 843, 944, 1083
MslI	CAYNNNNRTG	3 cut(s)	653, 982, 1016
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	293, 1044
MunI	CAATTG	2 cut(s)	818, 1220
Mva1269I	GAATGC	1 cut(s)	1350
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	2 cut(s)	773, 1343
NciI	CCSGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	4 cut(s)	259, 593, 1269, 1401
NlaIII	CATG	5 cut(s)	266, 451, 455, 987, 1267
NlaIV	GGNNCC	1 cut(s)	1329
NmuCI	GTSAC	1 cut(s)	1304
NsiI	ATGCAT	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	787
PctI	GAATGC	1 cut(s)	1350
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	150, 500
PkrI	GCNGC	5 cut(s)	88, 190, 553, 766, 811
PsiI	TTATAA	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	1042
PspEI	GGTNACC	2 cut(s)	141, 427
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	1 cut(s)	1329
PspPI	GGNCC	2 cut(s)	307, 346
PsrI	GAACNNNNNNTAC	2 cut(s)	151, 183
PstI	CTGCAG	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	2 cut(s)	483, 1299
RsaNI	GTAC	2 cut(s)	482, 1298
RseI	CAYNNNNRTG	3 cut(s)	653, 982, 1016
SalI	GTCGAC	1 cut(s)	372
SaqAI	TTAA	5 cut(s)	21, 423, 843, 944, 1083
SatI	GCNGC	5 cut(s)	87, 189, 552, 765, 810
Sau3AI	GATC	4 cut(s)	259, 593, 1269, 1401
Sau96I	GGNCC	2 cut(s)	307, 346
ScaI	AGTACT	1 cut(s)	483
ScrFI	CCNGG	2 cut(s)	293, 1044
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	4 cut(s)	731, 784, 986, 1108
SfcI	CTRYAG	2 cut(s)	651, 1254
SmiMI	CAYNNNNRTG	3 cut(s)	653, 982, 1016
SmlI	CTYRAG	2 cut(s)	909, 1153
SmoI	CTYRAG	2 cut(s)	909, 1153
Sse9I	AATT	9 cut(s)	243, 387, 495, 557, 695, 818, 938, 1220, 1379
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	2 cut(s)	421, 1077
SspMI	CTAG	1 cut(s)	1289
StyD4I	CCNGG	2 cut(s)	291, 1042
TaaI	ACNGT	3 cut(s)	399, 1015, 1039
TaqI	TCGA	6 cut(s)	45, 373, 384, 523, 634, 1166
TasI	AATT	9 cut(s)	243, 387, 495, 557, 695, 818, 938, 1220, 1379
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	150, 500
Tru1I	TTAA	5 cut(s)	21, 423, 843, 944, 1083
Tru9I	TTAA	5 cut(s)	21, 423, 843, 944, 1083
TscAI	CASTG	6 cut(s)	276, 655, 660, 928, 979, 1018
TseFI	GTSAC	1 cut(s)	1304
TseI	GCWGC	5 cut(s)	86, 188, 551, 764, 809
Tsp45I	GTSAC	1 cut(s)	1304
TspDTI	ATGAA	9 cut(s)	44, 150, 326, 468, 708, 746, 980, 1087, 1237
TspRI	CASTG	6 cut(s)	276, 655, 660, 928, 979, 1018
XapI	RAATTY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	1 cut(s)	1289
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.