Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042317.1

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

1165 .. 2053

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042317.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgcttcatttggctgcacgagcatctccaaatcgactaagtgttgatacaggggcagcattgaaattgcgaagagagttgacttggtttaaggaggtggagaagattgtccagccattatacaaagaaatgaggaactcagatggagaaacacctcaacttcttttcaccaaggaacacaaggaactactacgacaaggagaagagtggatgaagggcactgcatcatcatgcatggttgtggcaactcttattgccactgtaatgttttctgtcttctccactgtccccggtggcaacaacaataacacaggcattcccatattccttaaatcaagggccttcaaggtttttgtcatatcagattcaatatccctcatctcatcgaccacttcaatcttgagttttctgtccattcttacatcacgctacactgaaggagattttctcaattcattaccgtatagattgatcgtggggcttgctaccttatttatctctatggctacaatgatgatgacatttgttgccacacttcttatggttcttggccctggatttcatgagataaaatttccagttgctttggttgctgcagttccagttggtttctacgcgttactacagtttcctcttctatctgatatgatctgtcatgcttatatctcacgagtttcttttcgtccatgcaaccacctcttgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

235

Amino Acids

26.14

Weight (kDa)

9.22

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	617
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	4 cut(s)	64, 346, 369, 396
AjnI	CCWGG	1 cut(s)	553
AoxI	GGCC	2 cut(s)	339, 550
ApeKI	GCWGC	3 cut(s)	14, 56, 593
ApoI	RAATTY	1 cut(s)	572
AspS9I	GGNCC	2 cut(s)	339, 551
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	221
BauI	CACGAG	2 cut(s)	18, 669
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	68, 580
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	1 cut(s)	706
BfmI	CTRYAG	2 cut(s)	594, 623
BisI	GCNGC	3 cut(s)	15, 57, 594
BlsI	GCNGC	3 cut(s)	16, 58, 595
Bme1390I	CCNGG	2 cut(s)	291, 555
BmgT120I	GGNCC	2 cut(s)	339, 551
BmrFI	CCNGG	2 cut(s)	291, 555
BmsI	GCATC	2 cut(s)	32, 233
BpiI	GAAGAC	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	171, 289, 553
Bse1I	ACTGG	2 cut(s)	578, 602
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	171, 289, 553
BseGI	GGATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	578, 602
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	68, 580
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	2 cut(s)	341, 552
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	341, 552
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	471, 648
BspANI	GGCC	2 cut(s)	341, 552
BspCNI	CTCAG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	578, 602
BssECI	CCNNGG	3 cut(s)	171, 289, 553
BssMI	GATC	2 cut(s)	471, 648
BssSI	CACGAG	2 cut(s)	18, 669
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	2 cut(s)	18, 669
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	262, 286, 462, 627
Bst6I	CTCTTC	3 cut(s)	67, 198, 639
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	38, 139
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	617
BstKTI	GATC	2 cut(s)	474, 651
BstMBI	GATC	2 cut(s)	471, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 590
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	289, 553
BstSFI	CTRYAG	2 cut(s)	594, 623
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	68, 580
BstV2I	GAAGAC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	341, 552
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	4 cut(s)	219, 258, 282, 432
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	339, 551
CviAII	CATG	5 cut(s)	231, 235, 563, 656, 687
CviJI	RGCY	6 cut(s)	14, 115, 341, 481, 506, 552
CviKI_1	RGCY	6 cut(s)	14, 115, 341, 481, 506, 552
DdeI	CTNAG	2 cut(s)	38, 139
DpnI	GATC	2 cut(s)	473, 650
DpnII	GATC	2 cut(s)	471, 648
Eam1104I	CTCTTC	3 cut(s)	67, 198, 639
EarI	CTCTTC	3 cut(s)	67, 198, 639
Eco130I	CCWWGG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	234, 238, 566, 659, 690
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	5 cut(s)	230, 234, 562, 655, 686
Fnu4HI	GCNGC	3 cut(s)	15, 57, 594
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	15, 57, 594
FspBI	CTAG	1 cut(s)	706
GluI	GCNGC	3 cut(s)	15, 57, 594
HaeIII	GGCC	2 cut(s)	341, 552
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	5 cut(s)	234, 238, 566, 659, 690
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	142, 364, 643
Hpy188III	TCNNGA	3 cut(s)	400, 563, 669
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	208, 352, 431
HpyCH4III	ACNGT	4 cut(s)	262, 286, 462, 627
HpyCH4V	TGCA	6 cut(s)	17, 224, 234, 596, 690, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 590
HpyF3I	CTNAG	2 cut(s)	38, 139
Hsp92II	CATG	5 cut(s)	234, 238, 566, 659, 690
Kzo9I	GATC	2 cut(s)	471, 648
LpnPI	CCDG	8 cut(s)	36, 125, 297, 304, 540, 567, 591, 615
Lsp1109I	GCAGC	2 cut(s)	68, 580
LweI	GCATC	2 cut(s)	32, 233
MaeI	CTAG	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	618
MalI	GATC	2 cut(s)	473, 650
MboI	GATC	2 cut(s)	471, 648
MboII	GAAGA	5 cut(s)	84, 115, 215, 268, 626
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	65, 451, 572
MluI	ACGCGT	1 cut(s)	615
MnlI	CCTC	6 cut(s)	88, 126, 165, 386, 642, 707
Mph1103I	ATGCAT	1 cut(s)	236
MseI	TTAA	2 cut(s)	90, 330
MslI	CAYNNNNRTG	3 cut(s)	229, 239, 263
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	291, 555
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	20, 590
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	471, 648
NlaIII	CATG	5 cut(s)	234, 238, 566, 659, 690
NsiI	ATGCAT	1 cut(s)	236
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	16, 58, 595
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	339, 551
PstI	CTGCAG	1 cut(s)	598
RseI	CAYNNNNRTG	3 cut(s)	229, 239, 263
SaqAI	TTAA	2 cut(s)	90, 330
SatI	GCNGC	3 cut(s)	15, 57, 594
Sau3AI	GATC	2 cut(s)	471, 648
Sau96I	GGNCC	2 cut(s)	339, 551
ScrFI	CCNGG	2 cut(s)	291, 555
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	99, 157, 351, 491, 699
SfaNI	GCATC	2 cut(s)	32, 233
SfcI	CTRYAG	2 cut(s)	594, 623
SmiMI	CAYNNNNRTG	3 cut(s)	229, 239, 263
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	3 cut(s)	65, 451, 572
SspMI	CTAG	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	289, 553
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	4 cut(s)	262, 286, 462, 627
TaqI	TCGA	2 cut(s)	34, 386
TasI	AATT	3 cut(s)	65, 451, 572
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	90, 330
Tru9I	TTAA	2 cut(s)	90, 330
TscAI	CASTG	4 cut(s)	226, 265, 289, 439
TseI	GCWGC	3 cut(s)	14, 56, 593
TspDTI	ATGAA	3 cut(s)	227, 444, 551
TspRI	CASTG	4 cut(s)	226, 265, 289, 439
XapI	RAATTY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.