Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

43406668 .. 43410697

Gene Structure 4030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTCAAAGATAACATTTTCAAACCAAAAAAAAAAAAAAAGACAACACTCAACATTTTTATTTTCTTGGTAGCTATCATAAACACCAACCTAGTTCCGTACGTGACACTACATCTTGCTGCTCTGAATGGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACGTACACTTTTTGTTGAGGAGCTAGTAAAATGGATGACACCAAATGACCTTGAATTGAAGAATGATGTAGGAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTATCAAAAGGATTGCTGAGGTAATGGTGGATATTAACCCAAGATTACCTCAGATCCGAGGTACTAAAGATCTAACACCTCTTCATATGGCTACATTGCTAGGCCACAAAGAAATTGTATGGTATCTATACGATAAGACAGTTTTGACAGAACAAGATTACATAGGGCTTCTTATTTCTGCCATAACAGCAGATCTTTATGATGTAGCACTGCATATAATTCAAAAGCACCCTGAAATGGCTTTTGCTCGAGATAGAAATGGAGAGACAGCACTACATGTATTGGCTCGAAAGCCTTCAGCATGTTATAGTGGAAGTCAGCTGGGATCTTTGCAACAATGGATAACTTCGTATGTGGCTATGGATATAGTTGAACAACACCCTGAAATGACTTCTGTTCAAGATGAAATTGTGGAGACTGCACTCCAAATAGTGGAGCCTGCGGCATGTTATAGTGGAAATCAGCTGGGACTTTGGAAACGATTGATATTATCGGTCCCCAATATCCAGGTCTCATACGACAAAAAGTTGAATCATATGCAAGCAACTGAACTTGTGAAGCTGCTTTGGAAAAAAGTTTTGACACTAGGGAGTGATTTGGGGATAAATGATTTGATCAATGTACCCTCTCGCTTATTGTTTACTGCTGCTGAATTGGGGAATATAGAATTTCTCATTATACTTATTAGATCGTACCCCAGTCTCATTTGGCAAGTTGATGAACAAAACCGAAGCATATTTCATGCTGCATTGATTCATCGACAGGAAAAAGTTTCAATCTCATTTATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

377

Amino Acids

42.57

Weight (kDa)

8.33

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	37 - 124	2e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	72 - 159	1.2e-09	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	772
AciI	CCGC	2 cut(s)	315, 782
AclWI	GGATC	2 cut(s)	388, 673
AcsI	RAATTY	2 cut(s)	151, 1007
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	5 cut(s)	101, 241, 403, 963, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	577, 772
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	9 cut(s)	7, 22, 290, 295, 563, 713, 740, 871, 1116
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	7 cut(s)	74, 176, 227, 259, 661, 805, 901
AluI	AGCT	7 cut(s)	74, 176, 227, 259, 661, 805, 901
Alw26I	GTCTC	4 cut(s)	599, 749, 856, 1046
AlwI	GGATC	2 cut(s)	388, 673
AlwNI	CAGNNNCTG	2 cut(s)	176, 209
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	6 cut(s)	119, 224, 329, 901, 986, 1085
ApoI	RAATTY	2 cut(s)	151, 1007
Asp700I	GAANNNNTTC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	835
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	106, 236, 316, 888, 973, 1072
BciT130I	CCWGG	1 cut(s)	848
BclI	TGATCA	1 cut(s)	954
BcoDI	GTCTC	4 cut(s)	599, 749, 856, 1046
BfaI	CTAG	5 cut(s)	92, 147, 260, 440, 926
BglII	AGATCT	2 cut(s)	409, 532
BisI	GCNGC	7 cut(s)	120, 225, 330, 783, 902, 987, 1086
BlsI	GCNGC	7 cut(s)	121, 226, 331, 784, 903, 988, 1087
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	2 cut(s)	777, 837
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	1 cut(s)	1032
BmuI	ACTGGG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 772
Bse1I	ACTGG	2 cut(s)	140, 1038
Bse3DI	GCAATG	2 cut(s)	219, 434
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	144, 276
BseLI	CCNNNNNNNGG	2 cut(s)	577, 772
BseMI	GCAATG	2 cut(s)	219, 434
BseMII	CTCAG	2 cut(s)	348, 404
BseNI	ACTGG	2 cut(s)	140, 1038
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	6 cut(s)	106, 236, 316, 888, 973, 1072
BseYI	CCCAGC	3 cut(s)	227, 661, 805
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	588
BsiWI	CGTACG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	821, 822
BslI	CCNNNNNNNGG	2 cut(s)	577, 772
BsmAI	GTCTC	4 cut(s)	599, 749, 856, 1046
BsmFI	GGGAC	2 cut(s)	821, 822
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	856
BsoBI	CYCGRG	1 cut(s)	588
Bsp143I	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
BspACI	CCGC	2 cut(s)	315, 782
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	2 cut(s)	349, 403
BspLI	GGNNCC	2 cut(s)	777, 837
BspPI	GGATC	2 cut(s)	388, 673
BspQI	GCTCTTC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	856
BsrDI	GCAATG	2 cut(s)	219, 434
BsrI	ACTGG	2 cut(s)	140, 1038
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	2 cut(s)	219, 426
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	780, 882
BstDEI	CTNAG	3 cut(s)	186, 357, 390
BstF5I	GGATG	2 cut(s)	144, 276
BstKTI	GATC	7 cut(s)	192, 396, 412, 535, 668, 957, 1031
BstMAI	GTCTC	4 cut(s)	599, 749, 856, 1046
BstMBI	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 182, 230, 527
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	3 cut(s)	620, 645, 789
BstSCI	CCNGG	1 cut(s)	846
BstV1I	GCAGC	6 cut(s)	106, 236, 316, 888, 973, 1072
BstX2I	RGATCY	4 cut(s)	393, 409, 532, 665
BstYI	RGATCY	4 cut(s)	393, 409, 532, 665
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	144, 276
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	780, 882
CaiI	CAGNNNCTG	2 cut(s)	176, 209
Cfr13I	GGNCC	1 cut(s)	835
Csp6I	GTAC	5 cut(s)	100, 240, 402, 962, 1033
CviAII	CATG	4 cut(s)	617, 642, 786, 1082
CviQI	GTAC	5 cut(s)	100, 240, 402, 962, 1033
DdeI	CTNAG	3 cut(s)	186, 357, 390
DpnI	GATC	7 cut(s)	191, 395, 411, 534, 667, 956, 1030
DpnII	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
Eam1104I	CTCTTC	2 cut(s)	219, 426
EarI	CTCTTC	2 cut(s)	219, 426
Eco31I	GGTCTC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	846
FaeI	CATG	4 cut(s)	620, 645, 789, 1085
FaqI	GGGAC	2 cut(s)	821, 822
FatI	CATG	4 cut(s)	616, 641, 785, 1081
FauNDI	CATATG	2 cut(s)	426, 876
FbaI	TGATCA	1 cut(s)	954
Fnu4HI	GCNGC	7 cut(s)	120, 225, 330, 783, 902, 987, 1086
FokI	GGATG	2 cut(s)	151, 283
Fsp4HI	GCNGC	7 cut(s)	120, 225, 330, 783, 902, 987, 1086
FspBI	CTAG	5 cut(s)	92, 147, 260, 440, 926
GluI	GCNGC	7 cut(s)	120, 225, 330, 783, 902, 987, 1086
GsaI	CCCAGC	3 cut(s)	231, 665, 809
HaeIII	GGCC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	620, 645, 789, 1085
HinfI	GANTC	2 cut(s)	871, 1093
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	242, 981
Hpy188I	TCNGA	4 cut(s)	126, 205, 393, 398
Hpy188III	TCNNGA	2 cut(s)	590, 740
Hpy8I	GTNNAC	2 cut(s)	242, 981
HpyAV	CCTTC	1 cut(s)	645
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	2 cut(s)	102, 238
HpyCH4V	TGCA	7 cut(s)	160, 224, 553, 673, 761, 880, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 182, 230, 527
HpyF3I	CTNAG	3 cut(s)	186, 357, 390
HpySE526I	ACGT	2 cut(s)	102, 238
Hsp92II	CATG	4 cut(s)	620, 645, 789, 1085
Ksp22I	TGATCA	1 cut(s)	954
Kzo9I	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	256, 775
Lsp1109I	GCAGC	6 cut(s)	106, 236, 316, 888, 973, 1072
MaeI	CTAG	5 cut(s)	92, 147, 260, 440, 926
MaeII	ACGT	2 cut(s)	102, 238
MaeIII	GTNAC	2 cut(s)	103, 131
MalI	GATC	7 cut(s)	191, 395, 411, 534, 667, 956, 1030
MboI	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
MboII	GAAGA	3 cut(s)	206, 307, 413
MflI	RGATCY	4 cut(s)	393, 409, 532, 665
MluCI	AATT	9 cut(s)	151, 161, 290, 453, 558, 747, 992, 1007, 1129
MnlI	CCTC	7 cut(s)	174, 247, 352, 392, 399, 429, 976
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	3 cut(s)	227, 661, 805
MspR9I	CCNGG	1 cut(s)	848
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	4 cut(s)	166, 182, 230, 527
NdeI	CATATG	2 cut(s)	426, 876
NdeII	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
NlaIII	CATG	4 cut(s)	620, 645, 789, 1085
NlaIV	GGNNCC	2 cut(s)	777, 837
NmuCI	GTSAC	2 cut(s)	103, 131
NspI	RCATGY	3 cut(s)	620, 645, 789
PaeR7I	CTCGAG	1 cut(s)	588
PciI	ACATGT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	871, 1093
Pfl23II	CGTACG	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	772
PkrI	GCNGC	7 cut(s)	121, 226, 331, 784, 903, 988, 1087
Ppu21I	YACGTR	1 cut(s)	103
PscI	ACATGT	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	846
PspFI	CCCAGC	3 cut(s)	227, 661, 805
PspGI	CCWGG	1 cut(s)	846
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	777, 837
PspPI	GGNCC	1 cut(s)	835
PstNI	CAGNNNCTG	2 cut(s)	176, 209
PsuI	RGATCY	4 cut(s)	393, 409, 532, 665
PvuII	CAGCTG	3 cut(s)	227, 661, 805
RsaI	GTAC	5 cut(s)	101, 241, 403, 963, 1034
RsaNI	GTAC	5 cut(s)	100, 240, 402, 962, 1033
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	7 cut(s)	120, 225, 330, 783, 902, 987, 1086
Sau3AI	GATC	7 cut(s)	189, 393, 409, 532, 665, 954, 1028
Sau96I	GGNCC	1 cut(s)	835
ScrFI	CCNGG	1 cut(s)	848
Sfr274I	CTCGAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	835
SlaI	CTCGAG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	9 cut(s)	151, 161, 290, 453, 558, 747, 992, 1007, 1129
SsiI	CCGC	2 cut(s)	315, 782
SspMI	CTAG	5 cut(s)	92, 147, 260, 440, 926
StyD4I	CCNGG	1 cut(s)	846
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	2 cut(s)	105, 241
TaqI	TCGA	3 cut(s)	589, 628, 1099
TaqII	GACCGA	1 cut(s)	823
TasI	AATT	9 cut(s)	151, 161, 290, 453, 558, 747, 992, 1007, 1129
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	2 cut(s)	871, 1093
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	2 cut(s)	103, 131
TseI	GCWGC	6 cut(s)	119, 224, 329, 901, 986, 1085
Tsp45I	GTSAC	2 cut(s)	103, 131
TspDTI	ATGAA	5 cut(s)	413, 759, 1070, 1074, 1085
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	772
VpaK11BI	GGWCC	1 cut(s)	835
XapI	RAATTY	2 cut(s)	151, 1007
XceI	RCATGY	3 cut(s)	620, 645, 789
XhoI	CTCGAG	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	5 cut(s)	92, 147, 260, 440, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.