Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

25568869 .. 25569631

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCAGAGAAACTAACCACATCATCGCCATTTGAAGTTGAAGAAGGAGTCTCAACCCAAGAGAACTTCCCAAAAGAATCTGCAGGAGAAGTTATGCAAGAGACATGTGGACTAACCTTTGGAGGCGACAATGGCACCGCTGCCACATCCGGCAGACAGTCATTTGCAACAAGCGATGGAGGGTACAGTGCAGGTCCTCCGTCTAGCAGGACGACATGTGCAACAATAAGCTACGGAGGTTACTACAGCAGCGGTGGAACGTCTAGCTGCAGACCGACGTGTCATCCGTTACCACCTGGCCTCGGAACACCAATTATCGCAATTGTTCATAGTCCTGAATTTACGTTTGGTGGATGGGGTAATTCTACTGAAAATGTTGATGTAGAGATTGGCCATGATCAGCAACCTGATGATCTGGAGGCTACATATACTGCAGAAGAAGCCGAAAGAAAACAAAGGGAAGATGCAGCTTCCCCAGTAATAACCCAGTCAGACTCCATTTCAATTTGTTGGCCACTCAGAAAATTACTTGATAGGGGAAGAAATGAGTCTCATTCCAACAACGACCATGAAACTAGTATTGCAGGACCACCAAGTGAGCATGTTCCAAATAACGTCGCAAATTCATCTAACATCATTTCGTGTATGTTCTTCCAACTTACTTATGATCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

225

Amino Acids

23.96

Weight (kDa)

4.47

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	138, 252
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	2 cut(s)	391, 512
AcsI	RAATTY	2 cut(s)	338, 622
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	3 cut(s)	104, 215, 278
AgsI	TTSAA	3 cut(s)	35, 41, 504
AhlI	ACTAGT	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	231, 267, 470
AluI	AGCT	3 cut(s)	231, 267, 470
Alw26I	GTCTC	3 cut(s)	55, 95, 555
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	3 cut(s)	298, 391, 512
ApeKI	GCWGC	4 cut(s)	140, 249, 267, 467
ApoI	RAATTY	2 cut(s)	338, 622
AspS9I	GGNCC	2 cut(s)	194, 587
AvaII	GGWCC	2 cut(s)	194, 587
BalI	TGGCCA	2 cut(s)	393, 514
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	127, 254, 261, 479
BccI	CCATC	2 cut(s)	170, 348
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	55, 95, 555
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	3 cut(s)	204, 264, 576
BfmI	CTRYAG	4 cut(s)	81, 244, 268, 432
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	141, 250, 268, 468
BlsI	GCNGC	4 cut(s)	142, 251, 269, 469
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	2 cut(s)	194, 587
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	194, 587
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	2 cut(s)	470, 481
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	2 cut(s)	470, 481
BpmI	CTGGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	476, 487
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	146, 283, 359
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	532
BseNI	ACTGG	2 cut(s)	476, 487
BseXI	GCAGC	4 cut(s)	127, 254, 261, 479
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	300, 393, 514
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	3 cut(s)	55, 95, 555
BsnI	GGCC	3 cut(s)	300, 393, 514
Bsp143I	GATC	3 cut(s)	397, 412, 667
BspACI	CCGC	2 cut(s)	138, 252
BspANI	GGCC	3 cut(s)	300, 393, 514
BspCNI	CTCAG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	3 cut(s)	85, 272, 436
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	476, 487
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	397, 412, 667
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	159, 188
BstDEI	CTNAG	1 cut(s)	518
BstF5I	GGATG	3 cut(s)	146, 283, 359
BstKTI	GATC	3 cut(s)	400, 415, 670
BstMAI	GTCTC	3 cut(s)	55, 95, 555
BstMBI	GATC	3 cut(s)	397, 412, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 440
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	3 cut(s)	108, 219, 605
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	4 cut(s)	81, 244, 268, 432
BstV1I	GCAGC	4 cut(s)	127, 254, 261, 479
BsuRI	GGCC	3 cut(s)	300, 393, 514
BtgZI	GCGATG	2 cut(s)	9, 189
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	146, 283, 359
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	194, 587
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	5 cut(s)	105, 216, 395, 569, 602
CviJI	RGCY	8 cut(s)	231, 267, 300, 393, 422, 443, 470, 514
CviKI_1	RGCY	8 cut(s)	231, 267, 300, 393, 422, 443, 470, 514
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	3 cut(s)	399, 414, 669
DpnII	GATC	3 cut(s)	397, 412, 667
DraIII	CACNNNGTG	1 cut(s)	596
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	391, 512
Eco47I	GGWCC	2 cut(s)	194, 587
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	5 cut(s)	108, 219, 398, 572, 605
FatI	CATG	5 cut(s)	104, 215, 394, 568, 601
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	141, 250, 268, 468
FokI	GGATG	3 cut(s)	133, 270, 366
Fsp4HI	GCNGC	4 cut(s)	141, 250, 268, 468
FspBI	CTAG	3 cut(s)	204, 264, 576
GluI	GCNGC	4 cut(s)	141, 250, 268, 468
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	300, 393, 514
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	5 cut(s)	108, 219, 398, 572, 605
HinfI	GANTC	4 cut(s)	48, 77, 494, 548
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	4 cut(s)	7, 305, 493, 521
Hpy188III	TCNNGA	3 cut(s)	335, 416, 671
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	280, 620
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	159, 188
HpyCH4IV	ACGT	4 cut(s)	260, 278, 344, 615
HpyCH4V	TGCA	9 cut(s)	83, 97, 167, 191, 221, 270, 434, 467, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 440
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	4 cut(s)	260, 278, 344, 615
Hsp92II	CATG	5 cut(s)	108, 219, 398, 572, 605
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	397, 412, 667
Lsp1109I	GCAGC	4 cut(s)	127, 254, 261, 479
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	3 cut(s)	204, 264, 576
MaeII	ACGT	4 cut(s)	260, 278, 344, 615
MaeIII	GTNAC	2 cut(s)	239, 288
MalI	GATC	3 cut(s)	399, 414, 669
MboI	GATC	3 cut(s)	397, 412, 667
MboII	GAAGA	5 cut(s)	53, 449, 473, 552, 643
MfeI	CAATTG	1 cut(s)	321
MlsI	TGGCCA	2 cut(s)	393, 514
MluCI	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
MluNI	TGGCCA	2 cut(s)	393, 514
MlyI	GAGTC	3 cut(s)	57, 488, 557
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	116, 173, 207, 230, 311, 412
Mox20I	TGGCCA	2 cut(s)	393, 514
MscI	TGGCCA	2 cut(s)	393, 514
Msp20I	TGGCCA	2 cut(s)	393, 514
MspA1I	CMGCKG	2 cut(s)	140, 252
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	132, 440
NdeII	GATC	3 cut(s)	397, 412, 667
NlaIII	CATG	5 cut(s)	108, 219, 398, 572, 605
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	3 cut(s)	108, 219, 605
PciI	ACATGT	2 cut(s)	104, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	142, 251, 269, 469
PleI	GAGTC	3 cut(s)	56, 488, 556
PpsI	GAGTC	3 cut(s)	56, 488, 556
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	2 cut(s)	104, 215
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	194, 587
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	3 cut(s)	85, 272, 436
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	4 cut(s)	141, 250, 268, 468
Sau3AI	GATC	3 cut(s)	397, 412, 667
Sau96I	GGNCC	2 cut(s)	194, 587
SchI	GAGTC	3 cut(s)	57, 488, 557
ScrFI	CCNGG	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	4 cut(s)	81, 244, 268, 432
SinI	GGWCC	2 cut(s)	194, 587
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
SsiI	CCGC	2 cut(s)	138, 252
SspMI	CTAG	3 cut(s)	204, 264, 576
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	159, 188
TaiI	ACGT	4 cut(s)	263, 281, 347, 618
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	7 cut(s)	312, 321, 338, 361, 504, 524, 622
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	4 cut(s)	140, 249, 267, 467
TspDTI	ATGAA	3 cut(s)	317, 585, 615
TspGWI	ACGGA	3 cut(s)	189, 249, 276
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	194, 587
XapI	RAATTY	2 cut(s)	338, 622
XceI	RCATGY	3 cut(s)	108, 219, 605
XspI	CTAG	3 cut(s)	204, 264, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.