RchiOBHm_Chr4g0399281

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
16461391 .. 16467304
5914 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37141

Sequence Viewer

Length: 2124 bp
ATGTCAGAGGATTTCCAGGAGGAACCTGCACATGAAGTAGAAGGGCCATTTGAAAGCAGGCTGCAGACATCTCATCCATTACCAGAAGGCCTGGGAGCACAAGTGATAGCTCTCTTCACGAGTACTTTTCGCGAACCAAAGAAGATAGATAATAAAATTCCACCAAAAGTACAAGCAACAACACCTGCTAAATGGGCTCAGAGTGCTCCAACTCAAGAACGTACAAATATATCTGGCGATGTACTAAGAAAAGATCAGAAGGATGTTACACATACTCCAGAAAACAATGCCACAGCAACACCAACTATCATAAACACCAACCTAGTTCCGTACGTGACACTACATCTTGCTGCTCTGAATGGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACGTACACTTTTTGTTGAGGAGCTAGTAAAATGGATGACACCAAATGACCTTGAATTGAAGAATGATGTAGGAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTATCAAAAGGATTGCTGAGGTAATGGTGGATATTAACCCAAGATTACCTCAGATCCGAGGTACTAAAGATCTAACACCTCTTCATATGGCTACATTGCTAGGCCACAAAGAAATTGTATGGTATCTATACGACAAGACAATTTTGACAGAACAAGATTACATAGGGCTTCTTATTTCTGCCATAACGGCAGATCTTTATGATGTAGCACTGGATATAATTCAAAAGCACCCTGAAATGGCTTTTGCTCGAGATAGAAATGGAGAGACAGCACTACATGTATTGGCTCGAAAGCCTTCAGCATGTTATAGTGGAAGTCAGCTGGGATCTTTGAAACGATGGATAACTTCGTATGTGGCTATGGATATAGTTGAACAACACCCTGAAATGATTTCTGTTCAAGATGAAATTGTGGAGACTACACTCCAAATAGTGGAGCCTTCGGCATGTTATAGTGGAAATCAGCTGGGACTTTGGAAACGATTGATATTATCTGTCCCCAATATCCAGGTCTCATACGACAAAAAGTTGAATCATATGCAAGCAACTGAACTTGTGAAGCTGCTTTGGAAAAAAGTTTTGACACTAGGGAGTGATTTGGGGATAAATGATTTGATCAATGTACCCTCTCGCTTATTGTTTACTGCTGCTGAATTGGGGAATATAGAGTTTCTCATTATACTTATTAGATCGTACCCCAGTCTCATTTGGCAAGTTGATGAACAAAACCGAAGCATATTTCATGCTGCATTGATTCATCGACAGGAAAAAGTTTTCAATCTCATTTATGAATTAGGCGGTCTGAAAGACTTAATTGCCTCTTATAAAGATGTAAACAACAATAACATGCTTCATTTGGCTGCACGAGCATCTCCAAATCGACTAAGTTTTGATACAGGGGCAGCATTGAAACTGCGAAGAGAGTTGACTTGGTTTAAGGAGGTGGAGAAGATTGTCCAGCCATTATACAAAGAAATGAGGAACTCAGATGGAGAAACACCTCAACTTCTTTTCACCAAGGAACACAAGGAACTACTACGACAAGGAGAAGAGTGGATGAAGGGCACTGCATCATCATGCATGGTTGTGGCAACTCTTATTGCCACTGTAATGTTTTCTGTCTTCTCCACTGTCCCCGGTGGCAACAACAATAACACAGGCATTCCCATATTCCTTAAATCAAGGGCCTTCAAGGTTTTTGTCATATCAGATTCAATATCCCTCATCTCTTCGACCACTTCAATCTTGAGTTTTCTGTCCATTCTTACATCACGCTACACTGAAGGAGATTTTCTCAATTCATTACCGTATAGATTGATCGTGGGGCTTGCTACCTTATTTATCTCTATGGCTACAATGATGATGACATTTGTTGCCACACTTCTTATGGTTCTTGGCCCTGGATTTCATGAGATAAAATTTCCAGTTGCTTTGGTTGCTGCAGTTCCAGTTGGTTTCTACGCGTTACTACAGTTTCCTCTTCTATCTGATATGATCTGTCATGCTTATATCTCAAGAGTTTCTTTTCGTCCATGCAACCACCTCTTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

707

Amino Acids

79.1

Weight (kDa)

6.69

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 114 - 201 5.4e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 163 - 237 3.9e-08 Ankyrin repeats (3 copies)
PGG PF13962 540 - 653 5.8e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1395
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 2 cut(s) 34, 193
AccB7I CCANNNNNTGG 1 cut(s) 1003
AccII CGCG 2 cut(s) 132, 2033
AciI CCGC 2 cut(s) 546, 1368
AclWI GGATC 2 cut(s) 619, 904
AcsI RAATTY 3 cut(s) 156, 382, 1988
AcuI CTGAAG 2 cut(s) 852, 1872
AfaI GTAC 9 cut(s) 124, 171, 223, 243, 332, 472, 634, 1194, 1265
AfiI CCNNNNNNNGG 2 cut(s) 808, 1003
AflIII ACRYGT 2 cut(s) 847, 2031
AjnI CCWGG 4 cut(s) 15, 90, 1077, 1969
AluBI AGCT 7 cut(s) 110, 407, 458, 490, 892, 1036, 1132
AluI AGCT 7 cut(s) 110, 407, 458, 490, 892, 1036, 1132
Alw21I GWGCWC 2 cut(s) 100, 208
Alw26I GTCTC 4 cut(s) 830, 980, 1087, 1277
AlwI GGATC 2 cut(s) 619, 904
AlwNI CAGNNNCTG 2 cut(s) 407, 440
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 5 cut(s) 44, 88, 673, 1755, 1966
ApoI RAATTY 3 cut(s) 156, 382, 1988
Asp700I GAANNNNTTC 1 cut(s) 865
AspS9I GGNCC 3 cut(s) 44, 1755, 1967
AsuC2I CCSGG 1 cut(s) 1707
AsuHPI GGTGA 2 cut(s) 374, 1576
AvaI CYCGRG 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 1637
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 2 cut(s) 118, 1434
BbsI GAAGAC 1 cut(s) 1684
Bbv12I GWGCWC 2 cut(s) 100, 208
BbvCI CCTCAGC 1 cut(s) 588
BccI CCATC 2 cut(s) 903, 1553
BceAI ACGGC 1 cut(s) 774
BciT130I CCWGG 4 cut(s) 17, 92, 1079, 1971
BclI TGATCA 1 cut(s) 1185
BcnI CCSGG 1 cut(s) 1707
BcoDI GTCTC 4 cut(s) 830, 980, 1087, 1277
BfaI CTAG 6 cut(s) 323, 378, 491, 671, 1157, 2122
BfmI CTRYAG 3 cut(s) 62, 2010, 2039
BfuAI ACCTGC 2 cut(s) 34, 193
BglI GCCNNNNNGGC 1 cut(s) 758
BglII AGATCT 2 cut(s) 640, 763
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 5 cut(s) 17, 92, 1079, 1707, 1971
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 3 cut(s) 44, 1755, 1967
BmiI GGNNCC 2 cut(s) 24, 1008
BmrFI CCNGG 5 cut(s) 17, 92, 1079, 1707, 1971
BmrI ACTGGG 1 cut(s) 1263
BmsI GCATC 2 cut(s) 1448, 1649
BmuI ACTGGG 1 cut(s) 1263
BpiI GAAGAC 1 cut(s) 1684
BplI GAGNNNNNCTC 2 cut(s) 1848, 1880
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 3 cut(s) 198, 1837, 2068
BpuMI CCSGG 1 cut(s) 1707
BsaAI YACGTR 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 1087
BsaJI CCNNGG 5 cut(s) 91, 628, 1587, 1705, 1969
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 808, 1003
Bse1I ACTGG 5 cut(s) 371, 786, 1269, 1994, 2018
Bse3DI GCAATG 2 cut(s) 450, 665
BseBI CCWGG 4 cut(s) 17, 92, 1079, 1971
BseDI CCNNGG 5 cut(s) 91, 628, 1587, 1705, 1969
BseGI GGATG 5 cut(s) 73, 268, 375, 507, 1632
BseLI CCNNNNNNNGG 2 cut(s) 808, 1003
BseMI GCAATG 2 cut(s) 450, 665
BseMII CTCAG 4 cut(s) 212, 579, 635, 1569
BseNI ACTGG 5 cut(s) 371, 786, 1269, 1994, 2018
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 1637
BseYI CCCAGC 3 cut(s) 458, 892, 1036
BsgI GTGCAG 2 cut(s) 12, 1416
Bsh1236I CGCG 2 cut(s) 132, 2033
BshFI GGCC 5 cut(s) 46, 90, 675, 1757, 1968
BsiHKAI GWGCWC 2 cut(s) 100, 208
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 1 cut(s) 1707
BsiWI CGTACG 1 cut(s) 330
BslFI GGGAC 3 cut(s) 1052, 1053, 1688
BslI CCNNNNNNNGG 2 cut(s) 808, 1003
BsmAI GTCTC 4 cut(s) 830, 980, 1087, 1277
BsmFI GGGAC 3 cut(s) 1052, 1053, 1688
BsmI GAATGC 1 cut(s) 1731
BsnI GGCC 5 cut(s) 46, 90, 675, 1757, 1968
Bso31I GGTCTC 1 cut(s) 1087
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 4 cut(s) 100, 199, 208, 1637
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 2 cut(s) 546, 1368
BspANI GGCC 5 cut(s) 46, 90, 675, 1757, 1968
BspCNI CTCAG 4 cut(s) 211, 580, 634, 1568
BspFNI CGCG 2 cut(s) 132, 2033
BspHI TCATGA 1 cut(s) 1978
BspLI GGNNCC 2 cut(s) 24, 1008
BspMAI CTGCAG 2 cut(s) 66, 2014
BspMI ACCTGC 2 cut(s) 34, 193
BspPI GGATC 2 cut(s) 619, 904
BspQI GCTCTTC 1 cut(s) 450
BspTNI GGTCTC 1 cut(s) 1087
BsrDI GCAATG 2 cut(s) 450, 665
BsrI ACTGG 5 cut(s) 371, 786, 1269, 1994, 2018
BssECI CCNNGG 5 cut(s) 91, 628, 1587, 1705, 1969
BssSI CACGAG 2 cut(s) 118, 1434
BssT1I CCWWGG 1 cut(s) 1587
Bst2BI CACGAG 2 cut(s) 118, 1434
Bst2UI CCWGG 4 cut(s) 17, 92, 1079, 1971
Bst4CI ACNGT 4 cut(s) 1678, 1702, 1878, 2043
Bst6I CTCTTC 7 cut(s) 119, 450, 657, 1483, 1614, 1804, 2055
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 59, 1113, 1899
BstDEI CTNAG 7 cut(s) 198, 245, 417, 588, 621, 1454, 1555
BstF5I GGATG 5 cut(s) 73, 268, 375, 507, 1632
BstFNI CGCG 2 cut(s) 132, 2033
BstMAI GTCTC 4 cut(s) 830, 980, 1087, 1277
BstMWI GCNNNNNNNGC 8 cut(s) 194, 203, 397, 413, 461, 758, 1436, 2006
BstNI CCWGG 4 cut(s) 17, 92, 1079, 1971
BstNSI RCATGY 4 cut(s) 851, 876, 1020, 1420
BstSCI CCNGG 5 cut(s) 15, 90, 1077, 1705, 1969
BstSFI CTRYAG 3 cut(s) 62, 2010, 2039
BstSLI GKGCMC 1 cut(s) 1637
BstUI CGCG 2 cut(s) 132, 2033
BstV2I GAAGAC 1 cut(s) 1684
BstX2I RGATCY 4 cut(s) 624, 640, 763, 896
BstYI RGATCY 4 cut(s) 624, 640, 763, 896
BsuRI GGCC 5 cut(s) 46, 90, 675, 1757, 1968
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 5 cut(s) 73, 268, 375, 507, 1632
BtsI GCAGTG 1 cut(s) 1635
BtsIMutI CAGTG 5 cut(s) 779, 1635, 1674, 1698, 1848
BtuMI TCGCGA 1 cut(s) 132
BveI ACCTGC 2 cut(s) 34, 193
Cac8I GCNNGC 3 cut(s) 59, 1113, 1899
CaiI CAGNNNCTG 2 cut(s) 407, 440
CciI TCATGA 1 cut(s) 1978
Cfr13I GGNCC 3 cut(s) 44, 1755, 1967
Csp6I GTAC 9 cut(s) 123, 170, 222, 242, 331, 471, 633, 1193, 1264
CviQI GTAC 9 cut(s) 123, 170, 222, 242, 331, 471, 633, 1193, 1264
DdeI CTNAG 7 cut(s) 198, 245, 417, 588, 621, 1454, 1555
Eam1104I CTCTTC 7 cut(s) 119, 450, 657, 1483, 1614, 1804, 2055
EarI CTCTTC 7 cut(s) 119, 450, 657, 1483, 1614, 1804, 2055
Eco130I CCWWGG 1 cut(s) 1587
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 1087
Eco57I CTGAAG 2 cut(s) 852, 1872
Eco88I CYCGRG 1 cut(s) 819
EcoO109I RGGNCCY 1 cut(s) 1755
EcoRII CCWGG 4 cut(s) 15, 90, 1077, 1969
EcoT14I CCWWGG 1 cut(s) 1587
EcoT22I ATGCAT 1 cut(s) 1652
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 1587
FalI AAGNNNNNCTT 2 cut(s) 2077, 2109
FaqI GGGAC 3 cut(s) 1052, 1053, 1688
FauNDI CATATG 2 cut(s) 657, 1107
FbaI TGATCA 1 cut(s) 1185
FokI GGATG 5 cut(s) 60, 275, 382, 514, 1639
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 6 cut(s) 323, 378, 491, 671, 1157, 2122
GsaI CCCAGC 3 cut(s) 462, 896, 1040
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 5 cut(s) 46, 90, 675, 1757, 1968
HapII CCGG 1 cut(s) 1707
HincII GTYRAC 1 cut(s) 1497
HindII GTYRAC 1 cut(s) 1497
HinfI GANTC 3 cut(s) 1102, 1324, 1781
HpaII CCGG 1 cut(s) 1707
HphI GGTGA 2 cut(s) 374, 1576
Hpy166II GTNNAC 4 cut(s) 473, 1212, 1405, 1497
Hpy188III TCNNGA 9 cut(s) 118, 131, 215, 278, 821, 971, 1816, 1979, 2085
Hpy8I GTNNAC 4 cut(s) 473, 1212, 1405, 1497
HpyAV CCTTC 8 cut(s) 35, 80, 253, 876, 1020, 1624, 1768, 1847
HpyCH4III ACNGT 4 cut(s) 1678, 1702, 1878, 2043
HpyCH4IV ACGT 3 cut(s) 220, 333, 469
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 203, 397, 413, 461, 758, 1436, 2006
HpyF3I CTNAG 7 cut(s) 198, 245, 417, 588, 621, 1454, 1555
HpySE526I ACGT 3 cut(s) 220, 333, 469
Ksp22I TGATCA 1 cut(s) 1185
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 95, 211, 487, 1006
LweI GCATC 2 cut(s) 1448, 1649
MaeI CTAG 6 cut(s) 323, 378, 491, 671, 1157, 2122
MaeII ACGT 3 cut(s) 220, 333, 469
MaeIII GTNAC 4 cut(s) 265, 334, 362, 2034
MflI RGATCY 4 cut(s) 624, 640, 763, 896
MhlI GDGCHC 4 cut(s) 100, 199, 208, 1637
MluI ACGCGT 1 cut(s) 2031
MmeI TCCRAC 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 1652
MroXI GAANNNNTTC 1 cut(s) 865
MseI TTAA 4 cut(s) 606, 1382, 1506, 1746
MslI CAYNNNNRTG 3 cut(s) 1645, 1655, 1679
MspA1I CMGCKG 3 cut(s) 458, 892, 1036
MspI CCGG 1 cut(s) 1707
MspR9I CCNGG 5 cut(s) 17, 92, 1079, 1707, 1971
Mva1269I GAATGC 1 cut(s) 1731
MvaI CCWGG 4 cut(s) 17, 92, 1079, 1971
MvnI CGCG 2 cut(s) 132, 2033
MwoI GCNNNNNNNGC 8 cut(s) 194, 203, 397, 413, 461, 758, 1436, 2006
NciI CCSGG 1 cut(s) 1707
NdeI CATATG 2 cut(s) 657, 1107
NlaIV GGNNCC 2 cut(s) 24, 1008
NmuCI GTSAC 2 cut(s) 334, 362
NruI TCGCGA 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 1652
NspI RCATGY 4 cut(s) 851, 876, 1020, 1420
PaeR7I CTCGAG 1 cut(s) 819
PagI TCATGA 1 cut(s) 1978
PaqCI CACCTGC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 847
PciSI GCTCTTC 1 cut(s) 450
PctI GAATGC 1 cut(s) 1731
PdmI GAANNNNTTC 1 cut(s) 865
PfeI GAWTC 3 cut(s) 1102, 1324, 1781
Pfl23II CGTACG 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 1003
PfoI TCCNGGA 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 847
PsiI TTATAA 1 cut(s) 1395
Psp6I CCWGG 4 cut(s) 15, 90, 1077, 1969
PspFI CCCAGC 3 cut(s) 458, 892, 1036
PspGI CCWGG 4 cut(s) 15, 90, 1077, 1969
PspLI CGTACG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 24, 1008
PspPI GGNCC 3 cut(s) 44, 1755, 1967
PstI CTGCAG 2 cut(s) 66, 2014
PstNI CAGNNNCTG 2 cut(s) 407, 440
PsuI RGATCY 4 cut(s) 624, 640, 763, 896
PvuII CAGCTG 3 cut(s) 458, 892, 1036
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 9 cut(s) 124, 171, 223, 243, 332, 472, 634, 1194, 1265
RsaNI GTAC 9 cut(s) 123, 170, 222, 242, 331, 471, 633, 1193, 1264
RseI CAYNNNNRTG 3 cut(s) 1645, 1655, 1679
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 4 cut(s) 606, 1382, 1506, 1746
Sau96I GGNCC 3 cut(s) 44, 1755, 1967
ScaI AGTACT 1 cut(s) 124
ScrFI CCNGG 5 cut(s) 17, 92, 1079, 1707, 1971
SduI GDGCHC 4 cut(s) 100, 199, 208, 1637
SfaNI GCATC 2 cut(s) 1448, 1649
SfcI CTRYAG 3 cut(s) 62, 2010, 2039
Sfr274I CTCGAG 1 cut(s) 819
SlaI CTCGAG 1 cut(s) 819
SmiMI CAYNNNNRTG 3 cut(s) 1645, 1655, 1679
SmlI CTYRAG 4 cut(s) 213, 819, 1816, 2083
SmoI CTYRAG 4 cut(s) 213, 819, 1816, 2083
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 2 cut(s) 546, 1368
SspMI CTAG 6 cut(s) 323, 378, 491, 671, 1157, 2122
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 5 cut(s) 15, 90, 1077, 1705, 1969
StyI CCWWGG 1 cut(s) 1587
TaaI ACNGT 4 cut(s) 1678, 1702, 1878, 2043
TaiI ACGT 3 cut(s) 223, 336, 472
TaqI TCGA 5 cut(s) 820, 859, 1330, 1450, 1802
TatI WGTACW 3 cut(s) 122, 169, 241
TfiI GAWTC 3 cut(s) 1102, 1324, 1781
Tru1I TTAA 4 cut(s) 606, 1382, 1506, 1746
Tru9I TTAA 4 cut(s) 606, 1382, 1506, 1746
TscAI CASTG 5 cut(s) 786, 1642, 1681, 1705, 1855
TseFI GTSAC 2 cut(s) 334, 362
Tsp45I GTSAC 2 cut(s) 334, 362
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 5 cut(s) 786, 1642, 1681, 1705, 1855
Van91I CCANNNNNTGG 1 cut(s) 1003
XapI RAATTY 3 cut(s) 156, 382, 1988
XceI RCATGY 4 cut(s) 851, 876, 1020, 1420
XcmI CCANNNNNNNNNTGG 1 cut(s) 1954
XhoI CTCGAG 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 865
XspI CTAG 6 cut(s) 323, 378, 491, 671, 1157, 2122
ZrmI AGTACT 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 1652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.