Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

50163115 .. 50166243

Gene Structure 3129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAGTTAGCTTTTTGTGGATTGTATATATTACAGTTTTCAACTGCTATAATAGAATTCGACTATATAGCAAAGGGTATCATGTCAGAGGATTTCCAGGAGGAACCTGCACATGAAGTAGAAGGGCCATTTGAAAGCAGGCTGCAGACATCTCATCCATTATCAGAAGGCCTGGGAGCACAAGTGATAGCTCTCTTCACGAGTACTTTTCGCGAACCAAAGAAGATAGATAATAAAATTCCACCAAAAGTACAAGCAACAACACCTGCTAAATGGGCTCAGAGTGCTCCAACTCAAGAACGTACAAATATATCTGGCGATGTTCTAAGAAAAGATCAGAAGGATGTTACACACACTCCAGAAAACAATGCCGCAGCAACACCAACTATCATAAACACCAACCTAGTTCCGTATGTGACACTACATCTTGCTGCTCTGAATGGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACGTACACTTTTTGTTGAGGAGCTAGTAAAATGGATGACACCAAATGACCTTGAATTGAAGAATGATGTAGGAAACACCGCCCTTTATTTTGCTGCTGTATCTGGTATCAAAAGGATTGCGGAGGTAATGGTGGATGTTAACCCAAGATTACCTCAGATCCGAGGTACTAAAGATCTAACACCTCTTCATATGGCTACATTGCTAGGCCACAAAGAAATTGTATGGTATCTATACGATAAGACAATTTTGACAGAACAAGATTACATAGGGCTTCTTATTTCTGCCATAACAGCAGATCTTTATGATGTAGCACTGGATATAATTCAAAAGCACCCTGAAATGGCTTTTGCTCGAGATAGAAATGGAGAGACAGCACTACATGTATTGGCTCGAAAGCCTTCAGCATGTTATAGTGGAAGTCAGCTGGGATCTTTGCAACGATGGATAACTTCGTTTGTGGCTATGGATATAGTTGAACAACACCCTGAAATGACTTCTGTTCAAGATGAAATTGTGGAGACTACACTCCAAATAGTGGAGCCTTCGGCATGTTATAGTGGAAATCAGCTGGGACTTTGGAAACGATTGATATTATCTGTCCCCAATATCCAGGTCTCATACGACAAAAAGTTGAATCATATGCAAGCAACTGAACTTGTGAAGCTGCTTTGGAAAAAAGTTTTGACACTAGGGAGTGATTTGGGGATAAATGATTTGATCAATTTCCAGTTGTTTTCTACGCGTTACTACAGTTTCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

438

Amino Acids

48.96

Weight (kDa)

5.71

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	141 - 228	2.9e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	190 - 264	1.2e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	2 cut(s)	115, 274
AccB7I	CCANNNNNTGG	1 cut(s)	1084
AccII	CGCG	2 cut(s)	213, 1291
AciI	CCGC	3 cut(s)	372, 627, 668
AclWI	GGATC	2 cut(s)	700, 985
AcsI	RAATTY	3 cut(s)	56, 237, 463
AcuI	CTGAAG	1 cut(s)	933
AfaI	GTAC	5 cut(s)	205, 252, 304, 553, 715
AfiI	CCNNNNNNNGG	2 cut(s)	889, 1084
AflIII	ACRYGT	2 cut(s)	928, 1289
AgsI	TTSAA	8 cut(s)	42, 134, 602, 607, 875, 1025, 1052, 1183
AjnI	CCWGG	3 cut(s)	96, 171, 1158
AluBI	AGCT	8 cut(s)	11, 191, 488, 539, 571, 973, 1117, 1213
AluI	AGCT	8 cut(s)	11, 191, 488, 539, 571, 973, 1117, 1213
Alw21I	GWGCWC	2 cut(s)	181, 289
Alw26I	GTCTC	3 cut(s)	911, 1061, 1168
AlwI	GGATC	2 cut(s)	700, 985
AlwNI	CAGNNNCTG	2 cut(s)	488, 521
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	3 cut(s)	125, 169, 754
ApeKI	GCWGC	6 cut(s)	142, 374, 431, 536, 641, 1213
ApoI	RAATTY	3 cut(s)	56, 237, 463
Asp700I	GAANNNNTTC	1 cut(s)	946
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	900
BanII	GRGCYC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	181, 289
BbvI	GCAGC	6 cut(s)	129, 386, 418, 548, 628, 1200
BccI	CCATC	1 cut(s)	984
BciT130I	CCWGG	3 cut(s)	98, 173, 1160
BclI	TGATCA	1 cut(s)	1266
BcoDI	GTCTC	3 cut(s)	911, 1061, 1168
BfaI	CTAG	6 cut(s)	404, 459, 572, 752, 1238, 1312
BfmI	CTRYAG	2 cut(s)	143, 1297
BfuAI	ACCTGC	2 cut(s)	115, 274
BglII	AGATCT	2 cut(s)	721, 844
BisI	GCNGC	7 cut(s)	143, 372, 375, 432, 537, 642, 1214
BlsI	GCNGC	7 cut(s)	144, 373, 376, 433, 538, 643, 1215
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	98, 173, 1160
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	105, 1089
BmrFI	CCNGG	3 cut(s)	98, 173, 1160
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	1168
BsaJI	CCNNGG	2 cut(s)	172, 709
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	889, 1084
Bse1I	ACTGG	3 cut(s)	452, 867, 1276
Bse3DI	GCAATG	2 cut(s)	531, 746
BseBI	CCWGG	3 cut(s)	98, 173, 1160
BseDI	CCNNGG	2 cut(s)	172, 709
BseGI	GGATG	5 cut(s)	154, 349, 456, 588, 688
BseLI	CCNNNNNNNGG	2 cut(s)	889, 1084
BseMI	GCAATG	2 cut(s)	531, 746
BseMII	CTCAG	2 cut(s)	293, 716
BseNI	ACTGG	3 cut(s)	452, 867, 1276
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	6 cut(s)	129, 386, 418, 548, 628, 1200
BseYI	CCCAGC	3 cut(s)	539, 973, 1117
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	2 cut(s)	213, 1291
BshFI	GGCC	3 cut(s)	127, 171, 756
BsiHKAI	GWGCWC	2 cut(s)	181, 289
BsiHKCI	CYCGRG	1 cut(s)	900
BslFI	GGGAC	2 cut(s)	1133, 1134
BslI	CCNNNNNNNGG	2 cut(s)	889, 1084
BsmAI	GTCTC	3 cut(s)	911, 1061, 1168
BsmFI	GGGAC	2 cut(s)	1133, 1134
BsnI	GGCC	3 cut(s)	127, 171, 756
Bso31I	GGTCTC	1 cut(s)	1168
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	3 cut(s)	181, 280, 289
Bsp143I	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	3 cut(s)	372, 627, 668
BspANI	GGCC	3 cut(s)	127, 171, 756
BspCNI	CTCAG	2 cut(s)	292, 715
BspFNI	CGCG	2 cut(s)	213, 1291
BspLI	GGNNCC	2 cut(s)	105, 1089
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	2 cut(s)	115, 274
BspPI	GGATC	2 cut(s)	700, 985
BspQI	GCTCTTC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	1168
BsrDI	GCAATG	2 cut(s)	531, 746
BsrI	ACTGG	3 cut(s)	452, 867, 1276
BssECI	CCNNGG	2 cut(s)	172, 709
BssMI	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	3 cut(s)	98, 173, 1160
Bst4CI	ACNGT	2 cut(s)	36, 1301
Bst6I	CTCTTC	3 cut(s)	200, 531, 738
BstC8I	GCNNGC	2 cut(s)	140, 1194
BstDEI	CTNAG	4 cut(s)	279, 326, 498, 702
BstF5I	GGATG	5 cut(s)	154, 349, 456, 588, 688
BstFNI	CGCG	2 cut(s)	213, 1291
BstKTI	GATC	7 cut(s)	337, 504, 708, 724, 847, 980, 1269
BstMAI	GTCTC	3 cut(s)	911, 1061, 1168
BstMBI	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 284, 478, 494, 542, 839
BstNI	CCWGG	3 cut(s)	98, 173, 1160
BstNSI	RCATGY	3 cut(s)	932, 957, 1101
BstSCI	CCNGG	3 cut(s)	96, 171, 1158
BstSFI	CTRYAG	2 cut(s)	143, 1297
BstUI	CGCG	2 cut(s)	213, 1291
BstV1I	GCAGC	6 cut(s)	129, 386, 418, 548, 628, 1200
BstX2I	RGATCY	4 cut(s)	705, 721, 844, 977
BstYI	RGATCY	4 cut(s)	705, 721, 844, 977
BsuRI	GGCC	3 cut(s)	127, 171, 756
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	154, 349, 456, 588, 688
BtsIMutI	CAGTG	1 cut(s)	860
BtuMI	TCGCGA	1 cut(s)	213
BveI	ACCTGC	2 cut(s)	115, 274
Cac8I	GCNNGC	2 cut(s)	140, 1194
CaiI	CAGNNNCTG	2 cut(s)	488, 521
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	5 cut(s)	204, 251, 303, 552, 714
CviAII	CATG	5 cut(s)	82, 113, 929, 954, 1098
CviQI	GTAC	5 cut(s)	204, 251, 303, 552, 714
DdeI	CTNAG	4 cut(s)	279, 326, 498, 702
DpnI	GATC	7 cut(s)	336, 503, 707, 723, 846, 979, 1268
DpnII	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
Eam1104I	CTCTTC	3 cut(s)	200, 531, 738
EarI	CTCTTC	3 cut(s)	200, 531, 738
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	1168
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	900
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	96, 171, 1158
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	5 cut(s)	85, 116, 932, 957, 1101
FaqI	GGGAC	2 cut(s)	1133, 1134
FatI	CATG	5 cut(s)	81, 112, 928, 953, 1097
FauNDI	CATATG	2 cut(s)	738, 1188
FbaI	TGATCA	1 cut(s)	1266
Fnu4HI	GCNGC	7 cut(s)	143, 372, 375, 432, 537, 642, 1214
FokI	GGATG	5 cut(s)	141, 356, 463, 595, 695
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	7 cut(s)	143, 372, 375, 432, 537, 642, 1214
FspBI	CTAG	6 cut(s)	404, 459, 572, 752, 1238, 1312
GluI	GCNGC	7 cut(s)	143, 372, 375, 432, 537, 642, 1214
GsaI	CCCAGC	3 cut(s)	543, 977, 1121
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	127, 171, 756
Hin1II	CATG	5 cut(s)	85, 116, 932, 957, 1101
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	1 cut(s)	1183
HpaI	GTTAAC	1 cut(s)	688
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	554, 688
Hpy188I	TCNGA	8 cut(s)	88, 166, 282, 339, 438, 517, 705, 710
Hpy188III	TCNNGA	6 cut(s)	199, 212, 296, 359, 902, 1052
Hpy8I	GTNNAC	2 cut(s)	554, 688
HpyAV	CCTTC	5 cut(s)	116, 161, 334, 957, 1101
HpyCH4III	ACNGT	2 cut(s)	36, 1301
HpyCH4IV	ACGT	2 cut(s)	301, 550
HpyCH4V	TGCA	6 cut(s)	110, 145, 472, 536, 985, 1192
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 284, 478, 494, 542, 839
HpyF3I	CTNAG	4 cut(s)	279, 326, 498, 702
HpySE526I	ACGT	2 cut(s)	301, 550
Hsp92II	CATG	5 cut(s)	85, 116, 932, 957, 1101
Ksp22I	TGATCA	1 cut(s)	1266
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	4 cut(s)	176, 292, 568, 1087
Lsp1109I	GCAGC	6 cut(s)	129, 386, 418, 548, 628, 1200
MaeI	CTAG	6 cut(s)	404, 459, 572, 752, 1238, 1312
MaeII	ACGT	2 cut(s)	301, 550
MaeIII	GTNAC	4 cut(s)	346, 415, 443, 1292
MalI	GATC	7 cut(s)	336, 503, 707, 723, 846, 979, 1268
MboI	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
MboII	GAAGA	6 cut(s)	187, 235, 518, 619, 725, 1300
MflI	RGATCY	4 cut(s)	705, 721, 844, 977
MhlI	GDGCHC	3 cut(s)	181, 280, 289
MluI	ACGCGT	1 cut(s)	1289
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	82, 94, 486, 559, 664, 704, 711, 741
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	3 cut(s)	539, 973, 1117
MspR9I	CCNGG	3 cut(s)	98, 173, 1160
MvaI	CCWGG	3 cut(s)	98, 173, 1160
MvnI	CGCG	2 cut(s)	213, 1291
MwoI	GCNNNNNNNGC	6 cut(s)	275, 284, 478, 494, 542, 839
NdeI	CATATG	2 cut(s)	738, 1188
NdeII	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
NlaIII	CATG	5 cut(s)	85, 116, 932, 957, 1101
NlaIV	GGNNCC	2 cut(s)	105, 1089
NmuCI	GTSAC	2 cut(s)	415, 443
NruI	TCGCGA	1 cut(s)	213
NspI	RCATGY	3 cut(s)	932, 957, 1101
PaeR7I	CTCGAG	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	171
PciI	ACATGT	1 cut(s)	928
PciSI	GCTCTTC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	1183
PflMI	CCANNNNNTGG	1 cut(s)	1084
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	144, 373, 376, 433, 538, 643, 1215
PscI	ACATGT	1 cut(s)	928
Psp6I	CCWGG	3 cut(s)	96, 171, 1158
PspFI	CCCAGC	3 cut(s)	539, 973, 1117
PspGI	CCWGG	3 cut(s)	96, 171, 1158
PspN4I	GGNNCC	2 cut(s)	105, 1089
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	2 cut(s)	488, 521
PsuI	RGATCY	4 cut(s)	705, 721, 844, 977
PvuII	CAGCTG	3 cut(s)	539, 973, 1117
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	5 cut(s)	205, 252, 304, 553, 715
RsaNI	GTAC	5 cut(s)	204, 251, 303, 552, 714
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	7 cut(s)	143, 372, 375, 432, 537, 642, 1214
Sau3AI	GATC	7 cut(s)	334, 501, 705, 721, 844, 977, 1266
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	98, 173, 1160
SduI	GDGCHC	3 cut(s)	181, 280, 289
SfcI	CTRYAG	2 cut(s)	143, 1297
Sfr274I	CTCGAG	1 cut(s)	900
SlaI	CTCGAG	1 cut(s)	900
SmlI	CTYRAG	2 cut(s)	294, 900
SmoI	CTYRAG	2 cut(s)	294, 900
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	3 cut(s)	372, 627, 668
SspMI	CTAG	6 cut(s)	404, 459, 572, 752, 1238, 1312
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	96, 171, 1158
TaaI	ACNGT	2 cut(s)	36, 1301
TaiI	ACGT	2 cut(s)	304, 553
TaqI	TCGA	3 cut(s)	60, 901, 940
TatI	WGTACW	2 cut(s)	203, 250
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	1183
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	2 cut(s)	415, 443
TseI	GCWGC	6 cut(s)	142, 374, 431, 536, 641, 1213
Tsp45I	GTSAC	2 cut(s)	415, 443
TspDTI	ATGAA	3 cut(s)	129, 725, 1071
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	867
Van91I	CCANNNNNTGG	1 cut(s)	1084
XapI	RAATTY	3 cut(s)	56, 237, 463
XceI	RCATGY	3 cut(s)	932, 957, 1101
XhoI	CTCGAG	1 cut(s)	900
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	6 cut(s)	404, 459, 572, 752, 1238, 1312
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.