Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035003.1

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 397

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgattgcagatgtggctatggatatagttgaacaacaccctgaaattacttctgttcaagatgaaattgtggagactacactccaaatagtggagccttcggcatgttatagtggaaatcagctgggactttggaaacgattgatattatctgtccccaatatccaggtctcatacgacaaaaagttgaatcatatgcaagcaactgaacttgtgaagctgctttggaaaaaagttttgacactagggagtgatttggggataaatgatttgatcaatgtaccctctcgcttattgtttactgctgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

103

Amino Acids

11.49

Weight (kDa)

4.94

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	32, 59, 190
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	124, 220
AluI	AGCT	2 cut(s)	124, 220
Alw26I	GTCTC	2 cut(s)	68, 175
ApeKI	GCWGC	2 cut(s)	220, 305
BbvI	GCAGC	2 cut(s)	207, 292
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	68, 175
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	221, 306
BlsI	GCNGC	2 cut(s)	222, 307
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	207, 292
BseYI	CCCAGC	1 cut(s)	124
BslFI	GGGAC	2 cut(s)	140, 141
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	68, 175
BsmFI	GGGAC	2 cut(s)	140, 141
Bso31I	GGTCTC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	175
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	2 cut(s)	68, 175
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	207, 292
Cac8I	GCNNGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	4 cut(s)	17, 97, 124, 220
CviKI_1	RGCY	4 cut(s)	17, 97, 124, 220
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	108
FaiI	YATR	7 cut(s)	20, 26, 106, 111, 175, 195, 197
FaqI	GGGAC	2 cut(s)	140, 141
FatI	CATG	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	221, 306
Fsp4HI	GCNGC	2 cut(s)	221, 306
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	221, 306
GsaI	CCCAGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	108
HinfI	GANTC	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	8, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	54, 110, 152, 179
Lsp1109I	GCAGC	2 cut(s)	207, 292
MaeI	CTAG	1 cut(s)	245
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MluCI	AATT	2 cut(s)	45, 66
MnlI	CCTC	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	222, 307
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SatI	GCNGC	2 cut(s)	221, 306
Sau3AI	GATC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	3 cut(s)	126, 171, 222
Sse9I	AATT	2 cut(s)	45, 66
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	165
TasI	AATT	2 cut(s)	45, 66
TfiI	GAWTC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	220, 305
TspDTI	ATGAA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.