Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000375.1

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Reverse (-)

80643 .. 82625

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000375.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgataagaacggacctagttacctatgcctctctgcatcttgctgctcttaacggtgactggattactgcttggaatttgttgaaagataatccggcagctgcgagggcaaaaatcacaaagggttcggaaactgctcttcacattgctgctggggccaaacacacaatgtttgtggaggagattgttaaatggatgaatcaagaagacctcgaagtgaagaatgatgtggaaaacaccgccctttattttgctgctgtatctggtgtaaaaaggatagctgaggtaatggtgaataagaatgaaaggttaccccgaatccgaggtagtaaaggttcaacacctctccatatggctgcattgttaggccataaggagatggtatggtatctttacgataagactgatacaattttgaaagacaaagatcgtgtggagcttcttattgctgccataacatcagatctttacgatgtagcactgcatattatccaaaagcacccggaaatggctctggcccgtgatgagaatggagagactgcacttcatataatggcccgaaaacctttagcatattgcagtcgacatcagctcgaaatttggaaacggtgcttattttcaggtcgtaaccatccctcccgacctaaggcaaaggctgtaacgcgtcgcctccaagtcggcctccccagcattggcgtcgggcttcgacgccatccaaaacaatcgtctgatcaccatcaccagccaacccaccaacctccgatctcatttatcaaagcctgcccaccgagaccgccagcacccactagactctgctctgacccgacaaagtcccaatctccctccaatcccaacctgcagccacgacatagccaatcccatccactgagaaagaagatgcaagacacctcccgatcctatccttcggaatttagtcacgcctaccaaacaagcaacctgtccgaccgcactcaacatgcgtcggctaggccagaggctgtcgccaacactggctcacagccgagcaggcacaagcactgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

347

Amino Acids

38.98

Weight (kDa)

9.76

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	864
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	664
AciI	CCGC	3 cut(s)	240, 794, 967
AclWI	GGATC	1 cut(s)	909
AcsI	RAATTY	3 cut(s)	76, 597, 929
AcyI	GRCGYC	2 cut(s)	696, 709
AfiI	CCNNNNNNNGG	3 cut(s)	508, 646, 692
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	3 cut(s)	85, 339, 418
AluBI	AGCT	4 cut(s)	101, 281, 439, 592
AluI	AGCT	4 cut(s)	101, 281, 439, 592
Alw26I	GTCTC	2 cut(s)	530, 784
AlwI	GGATC	1 cut(s)	909
AlwNI	CAGNNNCTG	1 cut(s)	998
AoxI	GGCC	6 cut(s)	156, 367, 516, 555, 679, 989
ApeKI	GCWGC	8 cut(s)	44, 98, 101, 149, 254, 356, 449, 859
ApoI	RAATTY	3 cut(s)	76, 597, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspS9I	GGNCC	4 cut(s)	13, 156, 517, 556
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	4 cut(s)	68, 304, 725, 731
AvaII	GGWCC	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	8 cut(s)	31, 88, 110, 136, 241, 343, 436, 871
BccI	CCATC	5 cut(s)	373, 639, 720, 744, 888
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	530, 784
BfaI	CTAG	3 cut(s)	17, 807, 987
BfmI	CTRYAG	1 cut(s)	857
BfuAI	ACCTGC	1 cut(s)	864
BglI	GCCNNNNNGGC	1 cut(s)	1027
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	8 cut(s)	45, 99, 102, 150, 255, 357, 450, 860
BlsI	GCNGC	8 cut(s)	46, 100, 103, 151, 256, 358, 451, 861
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	4 cut(s)	13, 156, 517, 556
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	46, 888
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	2 cut(s)	696, 709
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 646, 692
Bse1I	ACTGG	2 cut(s)	65, 1015
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	4 cut(s)	201, 631, 712, 880
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	3 cut(s)	508, 646, 692
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	273, 878
BseNI	ACTGG	2 cut(s)	65, 1015
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	8 cut(s)	31, 88, 110, 136, 241, 343, 436, 871
BseYI	CCCAGC	2 cut(s)	152, 686
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	664
Bsh1285I	CGRYCG	1 cut(s)	967
BshFI	GGCC	6 cut(s)	158, 369, 518, 557, 681, 991
BsiEI	CGRYCG	1 cut(s)	967
BsiSI	CCGG	2 cut(s)	95, 503
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	3 cut(s)	508, 646, 692
BsmAI	GTCTC	2 cut(s)	530, 784
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	6 cut(s)	158, 369, 518, 557, 681, 991
Bso31I	GGTCTC	1 cut(s)	784
Bsp143I	GATC	5 cut(s)	427, 463, 730, 762, 914
BspACI	CCGC	3 cut(s)	240, 794, 967
BspANI	GGCC	6 cut(s)	158, 369, 518, 557, 681, 991
BspCNI	CTCAG	2 cut(s)	274, 879
BspFNI	CGCG	1 cut(s)	664
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	864
BspPI	GGATC	1 cut(s)	909
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	65, 1015
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	5 cut(s)	427, 463, 730, 762, 914
BssNI	GRCGYC	2 cut(s)	696, 709
Bst4CI	ACNGT	2 cut(s)	56, 609
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	2 cut(s)	696, 709
BstC8I	GCNNGC	3 cut(s)	781, 798, 1028
BstDEI	CTNAG	3 cut(s)	282, 645, 887
BstEII	GGTNACC	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	201, 631, 712, 880
BstFNI	CGCG	1 cut(s)	664
BstKTI	GATC	5 cut(s)	430, 466, 733, 765, 917
BstMAI	GTCTC	2 cut(s)	530, 784
BstMBI	GATC	5 cut(s)	427, 463, 730, 762, 914
BstMCI	CGRYCG	1 cut(s)	967
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 155, 687, 1027
BstNSI	RCATGY	1 cut(s)	980
BstPI	GGTNACC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	857
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	8 cut(s)	31, 88, 110, 136, 241, 343, 436, 871
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	6 cut(s)	158, 369, 518, 557, 681, 991
BtsCI	GGATG	4 cut(s)	201, 631, 712, 880
BtsI	GCAGTG	2 cut(s)	479, 1036
BtsIMutI	CAGTG	4 cut(s)	479, 884, 1008, 1036
BveI	ACCTGC	1 cut(s)	864
Cac8I	GCNNGC	3 cut(s)	781, 798, 1028
CaiI	CAGNNNCTG	1 cut(s)	998
Cfr13I	GGNCC	4 cut(s)	13, 156, 517, 556
CseI	GACGC	4 cut(s)	653, 685, 717, 969
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	1 cut(s)	977
DdeI	CTNAG	3 cut(s)	282, 645, 887
DpnI	GATC	5 cut(s)	429, 465, 732, 764, 916
DpnII	GATC	5 cut(s)	427, 463, 730, 762, 914
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	309
EcoO65I	GGTNACC	1 cut(s)	309
FaeI	CATG	1 cut(s)	980
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	1 cut(s)	976
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	45, 99, 102, 150, 255, 357, 450, 860
FokI	GGATG	4 cut(s)	208, 618, 699, 867
Fsp4HI	GCNGC	8 cut(s)	45, 99, 102, 150, 255, 357, 450, 860
FspBI	CTAG	3 cut(s)	17, 807, 987
GluI	GCNGC	8 cut(s)	45, 99, 102, 150, 255, 357, 450, 860
GsaI	CCCAGC	2 cut(s)	156, 690
HaeIII	GGCC	6 cut(s)	158, 369, 518, 557, 681, 991
HapII	CCGG	2 cut(s)	95, 503
HgaI	GACGC	4 cut(s)	653, 685, 717, 969
Hin1I	GRCGYC	2 cut(s)	696, 709
Hin1II	CATG	1 cut(s)	980
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	199, 318, 810
HpaII	CCGG	2 cut(s)	95, 503
HphI	GGTGA	4 cut(s)	68, 304, 725, 731
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	8 cut(s)	130, 323, 463, 730, 762, 820, 928, 964
Hpy188III	TCNNGA	3 cut(s)	203, 639, 912
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	4 cut(s)	669, 701, 711, 985
HpyAV	CCTTC	1 cut(s)	933
HpyCH4III	ACNGT	2 cut(s)	56, 609
HpyCH4V	TGCA	7 cut(s)	37, 359, 484, 542, 579, 859, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 155, 687, 1027
HpyF3I	CTNAG	3 cut(s)	282, 645, 887
Hsp92I	GRCGYC	2 cut(s)	696, 709
Hsp92II	CATG	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	5 cut(s)	427, 463, 730, 762, 914
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	8 cut(s)	31, 88, 110, 136, 241, 343, 436, 871
LweI	GCATC	2 cut(s)	46, 888
MaeI	CTAG	3 cut(s)	17, 807, 987
MaeIII	GTNAC	6 cut(s)	19, 56, 309, 626, 658, 935
MalI	GATC	5 cut(s)	429, 465, 732, 764, 916
MboI	GATC	5 cut(s)	427, 463, 730, 762, 914
MboII	GAAGA	4 cut(s)	131, 218, 232, 907
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	4 cut(s)	76, 411, 597, 929
MluI	ACGCGT	1 cut(s)	662
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	987
MseI	TTAA	2 cut(s)	51, 189
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	95, 503
MspR9I	CCNGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	4 cut(s)	107, 155, 687, 1027
NciI	CCSGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	5 cut(s)	427, 463, 730, 762, 914
NlaIII	CATG	1 cut(s)	980
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	56, 935
NspI	RCATGY	1 cut(s)	980
PciSI	GCTCTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	199, 318
PflFI	GACNNNGTC	1 cut(s)	829
PkrI	GCNGC	8 cut(s)	46, 100, 103, 151, 256, 358, 451, 861
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
PspEI	GGTNACC	1 cut(s)	309
PspFI	CCCAGC	2 cut(s)	152, 686
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	4 cut(s)	13, 156, 517, 556
PsrI	GAACNNNNNNTAC	2 cut(s)	319, 351
PstI	CTGCAG	1 cut(s)	861
PstNI	CAGNNNCTG	1 cut(s)	998
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	101
SalI	GTCGAC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	51, 189
SatI	GCNGC	8 cut(s)	45, 99, 102, 150, 255, 357, 450, 860
Sau3AI	GATC	5 cut(s)	427, 463, 730, 762, 914
Sau96I	GGNCC	4 cut(s)	13, 156, 517, 556
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	1 cut(s)	503
SfaNI	GCATC	2 cut(s)	46, 888
SfcI	CTRYAG	1 cut(s)	857
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	4 cut(s)	76, 411, 597, 929
SsiI	CCGC	3 cut(s)	240, 794, 967
SspMI	CTAG	3 cut(s)	17, 807, 987
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	56, 609
TaqI	TCGA	4 cut(s)	213, 583, 594, 706
TasI	AATT	4 cut(s)	76, 411, 597, 929
TfiI	GAWTC	2 cut(s)	199, 318
Tru1I	TTAA	2 cut(s)	51, 189
Tru9I	TTAA	2 cut(s)	51, 189
TscAI	CASTG	4 cut(s)	486, 891, 1015, 1043
TseFI	GTSAC	2 cut(s)	56, 935
TseI	GCWGC	8 cut(s)	44, 98, 101, 149, 254, 356, 449, 859
Tsp45I	GTSAC	2 cut(s)	56, 935
TspDTI	ATGAA	3 cut(s)	212, 318, 536
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	4 cut(s)	486, 891, 1015, 1043
Tth111I	GACNNNGTC	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	3 cut(s)	76, 597, 929
XceI	RCATGY	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	3 cut(s)	17, 807, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.