RLG00000018005

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001853
Physical Location & Seq
Forward (+)
24354578 .. 24358466
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018005

Sequence Viewer

Length: 1287 bp
ATGTCAGAGAAACTAACCACATCATCGCCATTTGAAGTTGAAGAAGGAGTCTCAACCCAAGAGAACTTCCCAAAAGAATCTGCAGGAGAAGTATTGCAAGAGACATGTGGACTAACCTTTGGAGTCGATAATGGCACCGCTGCCACATCCGGCCGATCGTCATTTGCAACAAGCGATGGAGGGTACAGTGCTGGTCCTCCGCCTAGCGGGACGACATGTGCAGCAATAAGCTACGGAGGTTACTACAGCAGCGGTGGAACGTCTAGCTGCAGACCGACGTGTCATCCGTTACCACCTGGCCTCGGAACACCAATTATCGCAATTGTTCATAGTCCTGAATTTACGTTTGGTGGATGGGGTAATTCTGCTGAAAAAGTTGATGTAGAGATTGGCCATGATCAGCAACCTGATGATCTGGAGGCTACCTATACTGCAGAAGAAGCCGAAAGAAAACAAAGGAAAGATGCAGCTTCCCCAGTAATAACCCACCCAGACTCCATTTCAACTTGTTGGCCACTCAGAAAATTACTTGACAGAGGAAGAAATGAGTCTCATTCCAACAACGACCATGAAACTAGTATTGCAGGACCACCAAGTGAGCATGTACCAAATAACGTCGCAAATTCATCCAACATCATTTCGTCCGTGATAAATAGTGACCTAGTACCCCATGTTCCTCTACATCTTGCTGCTCTCAAAGAGGATCTTGAACTGAAGAATGACGTGGAAAACACTGCCCTATTTTTTGCTGCTGTTTCTGGTATCAAAAGGATCGCTGAGGTAATGGTGGAGGTTAATCCTATATTACCTCGGATCCGAGGTAGTAACAATTCAACTGCTCTGCATATGGCTACTTTGCTAGGGCACAGGGAGATGGTAAGGTATCTTTACAGCAAGACTAAAAGAATTTTGACCTACCAGGACCGTGTGGGGCTTCTTATTGCTGCCATAACAGCAGATCTTTATGATGTAGCTCTTGATATTGTTAAACAACACCCTGAAATGGCTCTTGCTCGAGATGAAAACGAAGAGACTGCACTACATGTAATGGCGCGAAAGCCTTCAGCATATCATAATGGAAGTCAGCTTGGATTTTGGAAACGATGCATATTATCTTTCCCCAGGAATTTCAAGCGTTCCTGTGAAGAAAAGGTAAAGCATGCACTAGCCACTGAACTTGTGAAGCAGCTGTGGAAGAAAATTCTGACATTAGAAAATGATTCCAAGATTGGGGAGATTCAAAATTTGGACTTCTGGAGTTGTAATGTTGCTACAATACAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

429

Amino Acids

46.67

Weight (kDa)

5.62

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 233 - 300 5.9e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 1054
AciI CCGC 4 cut(s) 138, 200, 207, 252
AclWI GGATC 4 cut(s) 711, 779, 808, 821
AcoI YGGCCR 3 cut(s) 151, 391, 512
AcsI RAATTY 6 cut(s) 338, 622, 906, 1126, 1200, 1243
AcuI CTGAAG 2 cut(s) 734, 1047
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 185, 606, 666
AfiI CCNNNNNNNGG 4 cut(s) 206, 302, 1003, 1230
AflIII ACRYGT 4 cut(s) 104, 215, 278, 1042
AgsI TTSAA 7 cut(s) 35, 41, 504, 710, 834, 1132, 1241
AhlI ACTAGT 1 cut(s) 575
AjiI CACGTC 2 cut(s) 279, 724
AjnI CCWGG 3 cut(s) 295, 918, 1121
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 7 cut(s) 231, 267, 470, 974, 1087, 1189, 1284
AluI AGCT 7 cut(s) 231, 267, 470, 974, 1087, 1189, 1284
Alw26I GTCTC 4 cut(s) 55, 95, 555, 1025
AlwI GGATC 4 cut(s) 711, 779, 808, 821
Ama87I CYCGRG 1 cut(s) 1014
AoxI GGCC 4 cut(s) 151, 298, 391, 512
ApeKI GCWGC 9 cut(s) 140, 221, 249, 267, 467, 689, 749, 944, 1186
ApoI RAATTY 6 cut(s) 338, 622, 906, 1126, 1200, 1243
Asp700I GAANNNNTTC 1 cut(s) 1060
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 3 cut(s) 194, 587, 922
AvaI CYCGRG 1 cut(s) 1014
AvaII GGWCC 3 cut(s) 194, 587, 922
BaeGI GKGCMC 1 cut(s) 867
BalI TGGCCA 2 cut(s) 393, 514
BamHI GGATCC 1 cut(s) 813
BanI GGYRCC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 9 cut(s) 127, 233, 254, 261, 479, 676, 736, 931, 1198
BccI CCATC 3 cut(s) 170, 348, 868
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 3 cut(s) 297, 920, 1123
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 4 cut(s) 55, 95, 555, 1025
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 6 cut(s) 204, 264, 576, 662, 860, 1166
BfmI CTRYAG 4 cut(s) 81, 244, 268, 432
BglII AGATCT 1 cut(s) 958
BisI GCNGC 9 cut(s) 141, 222, 250, 268, 468, 690, 750, 945, 1187
BlsI GCNGC 9 cut(s) 142, 223, 251, 269, 469, 691, 751, 946, 1188
Bme1390I CCNGG 3 cut(s) 297, 920, 1123
Bme18I GGWCC 3 cut(s) 194, 587, 922
BmeT110I CYCGRG 1 cut(s) 1014
BmgBI CACGTC 2 cut(s) 279, 724
BmgT120I GGNCC 3 cut(s) 194, 587, 922
BmiI GGNNCC 2 cut(s) 136, 815
BmrFI CCNGG 3 cut(s) 297, 920, 1123
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 454, 1094
BmuI ACTGGG 1 cut(s) 470
BpmI CTGGAG 2 cut(s) 437, 1276
Bpu10I CCTNAGC 1 cut(s) 777
BsaJI CCNNGG 4 cut(s) 301, 809, 817, 1121
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 302, 1003, 1230
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 3 cut(s) 297, 920, 1123
BseDI CCNNGG 4 cut(s) 301, 809, 817, 1121
BseGI GGATG 4 cut(s) 146, 283, 359, 626
BseLI CCNNNNNNNGG 4 cut(s) 206, 302, 1003, 1230
BseMII CTCAG 2 cut(s) 532, 768
BseNI ACTGG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 867
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 9 cut(s) 127, 233, 254, 261, 479, 676, 736, 931, 1198
BsgI GTGCAG 2 cut(s) 240, 1020
Bsh1236I CGCG 1 cut(s) 1054
Bsh1285I CGRYCG 2 cut(s) 154, 158
BshFI GGCC 4 cut(s) 153, 300, 393, 514
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 2 cut(s) 154, 158
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 4 cut(s) 206, 302, 1003, 1230
BsmAI GTCTC 4 cut(s) 55, 95, 555, 1025
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 4 cut(s) 153, 300, 393, 514
BsoBI CYCGRG 1 cut(s) 1014
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
BspACI CCGC 4 cut(s) 138, 200, 207, 252
BspANI GGCC 4 cut(s) 153, 300, 393, 514
BspCNI CTCAG 2 cut(s) 531, 769
BspFNI CGCG 1 cut(s) 1054
BspLI GGNNCC 2 cut(s) 136, 815
BspMAI CTGCAG 3 cut(s) 85, 272, 436
BspPI GGATC 4 cut(s) 711, 779, 808, 821
BspT107I GGYRCC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 4 cut(s) 301, 809, 817, 1121
BssMI GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
Bst2UI CCWGG 3 cut(s) 297, 920, 1123
Bst4CI ACNGT 2 cut(s) 188, 926
Bst6I CTCTTC 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 1161
BstDEI CTNAG 2 cut(s) 518, 777
BstF5I GGATG 4 cut(s) 146, 283, 359, 626
BstFNI CGCG 1 cut(s) 1054
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 7 cut(s) 158, 400, 415, 706, 774, 816, 961
BstMAI GTCTC 4 cut(s) 55, 95, 555, 1025
BstMBI GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
BstMCI CGRYCG 2 cut(s) 154, 158
BstMWI GCNNNNNNNGC 2 cut(s) 440, 953
BstNI CCWGG 3 cut(s) 297, 920, 1123
BstNSI RCATGY 5 cut(s) 108, 219, 605, 1046, 1163
BstSCI CCNGG 3 cut(s) 295, 918, 1121
BstSFI CTRYAG 4 cut(s) 81, 244, 268, 432
BstSLI GKGCMC 1 cut(s) 867
BstUI CGCG 1 cut(s) 1054
BstV1I GCAGC 9 cut(s) 127, 233, 254, 261, 479, 676, 736, 931, 1198
BstX2I RGATCY 3 cut(s) 703, 813, 958
BstYI RGATCY 3 cut(s) 703, 813, 958
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 4 cut(s) 153, 300, 393, 514
BtgZI GCGATG 2 cut(s) 9, 189
BtrI CACGTC 2 cut(s) 279, 724
BtsCI GGATG 4 cut(s) 146, 283, 359, 626
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 193, 732, 1170
Cac8I GCNNGC 1 cut(s) 1161
CfoI GCGC 1 cut(s) 1054
Cfr13I GGNCC 3 cut(s) 194, 587, 922
Csp6I GTAC 3 cut(s) 184, 605, 665
CspCI CAANNNNNGTGG 2 cut(s) 1159, 1194
CviAII CATG 8 cut(s) 105, 216, 395, 569, 602, 671, 1043, 1160
CviQI GTAC 3 cut(s) 184, 605, 665
DdeI CTNAG 2 cut(s) 518, 777
DpnI GATC 7 cut(s) 157, 399, 414, 705, 773, 815, 960
DpnII GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
DraIII CACNNNGTG 1 cut(s) 596
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 3 cut(s) 151, 391, 512
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 189
EclXI CGGCCG 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 194, 587, 922
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 734, 1047
Eco88I CYCGRG 1 cut(s) 1014
EcoRII CCWGG 3 cut(s) 295, 918, 1121
EcoT22I ATGCAT 1 cut(s) 1109
FaeI CATG 8 cut(s) 108, 219, 398, 572, 605, 674, 1046, 1163
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 1 cut(s) 223
FatI CATG 8 cut(s) 104, 215, 394, 568, 601, 670, 1042, 1159
FauI CCCGC 1 cut(s) 200
FauNDI CATATG 1 cut(s) 846
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 9 cut(s) 141, 222, 250, 268, 468, 690, 750, 945, 1187
FokI GGATG 4 cut(s) 133, 270, 366, 613
Fsp4HI GCNGC 9 cut(s) 141, 222, 250, 268, 468, 690, 750, 945, 1187
FspBI CTAG 6 cut(s) 204, 264, 576, 662, 860, 1166
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 9 cut(s) 141, 222, 250, 268, 468, 690, 750, 945, 1187
GsuI CTGGAG 2 cut(s) 437, 1276
HaeIII GGCC 4 cut(s) 153, 300, 393, 514
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 1054
Hin1II CATG 8 cut(s) 108, 219, 398, 572, 605, 674, 1046, 1163
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HinfI GANTC 7 cut(s) 48, 77, 123, 494, 548, 1220, 1237
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 6 cut(s) 7, 305, 521, 813, 818, 1206
Hpy188III TCNNGA 6 cut(s) 335, 416, 707, 977, 1016, 1255
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 2 cut(s) 280, 620
HpyAV CCTTC 2 cut(s) 38, 1071
HpyCH4III ACNGT 2 cut(s) 188, 926
HpyCH4IV ACGT 5 cut(s) 260, 278, 344, 615, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 953
HpyF3I CTNAG 2 cut(s) 518, 777
HpySE526I ACGT 5 cut(s) 260, 278, 344, 615, 723
Hsp92II CATG 8 cut(s) 108, 219, 398, 572, 605, 674, 1046, 1163
HspAI GCGC 1 cut(s) 1052
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
Lsp1109I GCAGC 9 cut(s) 127, 233, 254, 261, 479, 676, 736, 931, 1198
LweI GCATC 2 cut(s) 454, 1094
MaeI CTAG 6 cut(s) 204, 264, 576, 662, 860, 1166
MaeII ACGT 5 cut(s) 260, 278, 344, 615, 723
MaeIII GTNAC 4 cut(s) 239, 288, 656, 824
MalI GATC 7 cut(s) 157, 399, 414, 705, 773, 815, 960
MboI GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
MboII GAAGA 7 cut(s) 53, 449, 552, 727, 1040, 1157, 1207
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 3 cut(s) 703, 813, 958
MhlI GDGCHC 1 cut(s) 867
MlsI TGGCCA 2 cut(s) 393, 514
MluNI TGGCCA 2 cut(s) 393, 514
MlyI GAGTC 4 cut(s) 57, 132, 488, 557
MmeI TCCRAC 2 cut(s) 582, 654
Mox20I TGGCCA 2 cut(s) 393, 514
Mph1103I ATGCAT 1 cut(s) 1109
MroXI GAANNNNTTC 1 cut(s) 1060
MscI TGGCCA 2 cut(s) 393, 514
MseI TTAA 2 cut(s) 795, 987
Msp20I TGGCCA 2 cut(s) 393, 514
MspA1I CMGCKG 3 cut(s) 140, 252, 1189
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 297, 920, 1123
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 3 cut(s) 297, 920, 1123
MvnI CGCG 1 cut(s) 1054
MwoI GCNNNNNNNGC 2 cut(s) 440, 953
NdeI CATATG 1 cut(s) 846
NdeII GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
NlaIII CATG 8 cut(s) 108, 219, 398, 572, 605, 674, 1046, 1163
NlaIV GGNNCC 2 cut(s) 136, 815
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 5 cut(s) 108, 219, 605, 1046, 1163
PaeI GCATGC 1 cut(s) 1163
PaeR7I CTCGAG 1 cut(s) 1014
PciI ACATGT 3 cut(s) 104, 215, 1042
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 1060
PfeI GAWTC 3 cut(s) 77, 1220, 1237
PkrI GCNGC 9 cut(s) 142, 223, 251, 269, 469, 691, 751, 946, 1188
Ple19I CGATCG 1 cut(s) 158
PleI GAGTC 4 cut(s) 56, 131, 488, 556
PpsI GAGTC 4 cut(s) 56, 131, 488, 556
PscI ACATGT 3 cut(s) 104, 215, 1042
Psp6I CCWGG 3 cut(s) 295, 918, 1121
PspGI CCWGG 3 cut(s) 295, 918, 1121
PspN4I GGNNCC 2 cut(s) 136, 815
PspPI GGNCC 3 cut(s) 194, 587, 922
PsrI GAACNNNNNNTAC 2 cut(s) 657, 689
PstI CTGCAG 3 cut(s) 85, 272, 436
PsuI RGATCY 3 cut(s) 703, 813, 958
PvuI CGATCG 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 1189
RsaI GTAC 3 cut(s) 185, 606, 666
RsaNI GTAC 3 cut(s) 184, 605, 665
SaqAI TTAA 2 cut(s) 795, 987
SatI GCNGC 9 cut(s) 141, 222, 250, 268, 468, 690, 750, 945, 1187
Sau3AI GATC 7 cut(s) 155, 397, 412, 703, 771, 813, 958
Sau96I GGNCC 3 cut(s) 194, 587, 922
SchI GAGTC 4 cut(s) 57, 132, 488, 557
ScrFI CCNGG 3 cut(s) 297, 920, 1123
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 2 cut(s) 454, 1094
SfcI CTRYAG 4 cut(s) 81, 244, 268, 432
Sfr274I CTCGAG 1 cut(s) 1014
SinI GGWCC 3 cut(s) 194, 587, 922
SlaI CTCGAG 1 cut(s) 1014
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
SpeI ACTAGT 1 cut(s) 575
SphI GCATGC 1 cut(s) 1163
SsiI CCGC 4 cut(s) 138, 200, 207, 252
SspMI CTAG 6 cut(s) 204, 264, 576, 662, 860, 1166
StyD4I CCNGG 3 cut(s) 295, 918, 1121
TaaI ACNGT 2 cut(s) 188, 926
TaiI ACGT 5 cut(s) 263, 281, 347, 618, 726
TaqI TCGA 2 cut(s) 126, 1015
TaqII GACCGA 1 cut(s) 289
TfiI GAWTC 3 cut(s) 77, 1220, 1237
Tru1I TTAA 2 cut(s) 795, 987
Tru9I TTAA 2 cut(s) 795, 987
TscAI CASTG 3 cut(s) 193, 739, 1177
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 9 cut(s) 140, 221, 249, 267, 467, 689, 749, 944, 1186
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 317, 585, 615, 1035
TspGWI ACGGA 3 cut(s) 249, 276, 634
TspRI CASTG 3 cut(s) 193, 739, 1177
VpaK11BI GGWCC 3 cut(s) 194, 587, 922
XapI RAATTY 6 cut(s) 338, 622, 906, 1126, 1200, 1243
XceI RCATGY 5 cut(s) 108, 219, 605, 1046, 1163
XhoI CTCGAG 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 1060
XspI CTAG 6 cut(s) 204, 264, 576, 662, 860, 1166
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.