Rorug04G0016100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001853
Physical Location & Seq
Forward (+)
2491746 .. 2492423
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0016100.1

Sequence Viewer

Length: 288 bp
ATGGCTGAAGAGCGATTCAGAATTCTGGTCGTGGATTCGGTGATTTCTCTCTTTCAAGGGGATTTTACTGGGAGAGGAGAACTTGGAGATCGCCAGCTAGTAATAGCTGATCCCGGTGGAAGAGTGTTCATATCAGATCCAAAGAAACCAGCAGGAGGACATGTGCTAGCCCATGCAGCAACAATGAGGCTCATGTTCAGGAAAGGCAAAGGCGAACAGCATGTCTGCAAGGTGTTTGATGCTCCGAACCTGCCTGAGGCTGAAGCAATATCCCTTCCACTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

95

Amino Acids

10.33

Weight (kDa)

6.83

Isoelectric Point (pI)

23.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 1 - 36 1.7e-09 Rad51
Rad51 PF08423 34 - 90 1.3e-20 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 104, 131
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 2 cut(s) 27, 282
AfiI CCNNNNNNNGG 2 cut(s) 155, 256
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 2 cut(s) 97, 107
AluI AGCT 2 cut(s) 97, 107
AlwI GGATC 2 cut(s) 104, 131
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 166
AxyI CCTNAGG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 2 cut(s) 98, 167
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 256
Bse1I ACTGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 155, 256
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 155, 256
Bsp143I GATC 3 cut(s) 88, 109, 136
BspCNI CTCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 104, 131
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 1 cut(s) 73
BssMI GATC 3 cut(s) 88, 109, 136
Bst6I CTCTTC 2 cut(s) 3, 115
BstC8I GCNNGC 2 cut(s) 95, 168
BstDEI CTNAG 1 cut(s) 255
BstENI CCTNNNNNAGG 1 cut(s) 254
BstKTI GATC 3 cut(s) 91, 112, 139
BstMBI GATC 3 cut(s) 88, 109, 136
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 164, 224
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 95, 168
CviAII CATG 4 cut(s) 161, 173, 193, 221
CviJI RGCY 6 cut(s) 5, 97, 107, 170, 190, 260
CviKI_1 RGCY 6 cut(s) 5, 97, 107, 170, 190, 260
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 90, 111, 138
DpnII GATC 3 cut(s) 88, 109, 136
Eam1104I CTCTTC 2 cut(s) 3, 115
EarI CTCTTC 2 cut(s) 3, 115
Eco57I CTGAAG 2 cut(s) 27, 282
Eco81I CCTNAGG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 21
FaeI CATG 4 cut(s) 164, 176, 196, 224
FaiI YATR 5 cut(s) 131, 162, 174, 194, 222
FatI CATG 4 cut(s) 160, 172, 192, 220
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 98, 167
GluI GCNGC 1 cut(s) 177
HapII CCGG 1 cut(s) 114
Hin1II CATG 4 cut(s) 164, 176, 196, 224
HinfI GANTC 2 cut(s) 15, 35
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 20, 136, 246
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 176, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 4 cut(s) 164, 176, 196, 224
Kzo9I GATC 3 cut(s) 88, 109, 136
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 11, 54, 107, 127, 138, 162, 184, 263, 267
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 98, 167
MalI GATC 3 cut(s) 90, 111, 138
MboI GATC 3 cut(s) 88, 109, 136
MboII GAAGA 2 cut(s) 20, 132
MflI RGATCY 1 cut(s) 136
MluCI AATT 1 cut(s) 21
MnlI CCTC 4 cut(s) 68, 149, 180, 250
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 114
NdeII GATC 3 cut(s) 88, 109, 136
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 4 cut(s) 164, 176, 196, 224
NspI RCATGY 2 cut(s) 164, 224
PciI ACATGT 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 3
PfeI GAWTC 2 cut(s) 15, 35
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 160
PsuI RGATCY 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 88, 109, 136
ScrFI CCNGG 1 cut(s) 114
SetI ASST 5 cut(s) 99, 109, 234, 252, 287
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 98, 167
StyD4I CCNGG 1 cut(s) 112
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 15, 35
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 21
XceI RCATGY 2 cut(s) 164, 224
XspI CTAG 2 cut(s) 98, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.