Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001853

Physical Location & Seq

Genomic Coordinates Forward (+)

19881015 .. 19882412

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCAGAGGATTTCCGGGAGGAACCTGCACATGAAGTAGAAGGGCCATTTGAAAGCAGGCTGCAGACATCTCATCCATTACCAGAAGGCCTGGGAGCACAAGTGATAGCTCTCTTCACGAGTACTTTTCGCGAACCAAAGAAGATAGATAATAAAATTCCACCAAAAGTACAAGCAACAACACCTGCTAAATGGGCTCAGAGTGCTCCAACTCAAGAACGTACAAATATATCTGGCGATGTACTAAGAAAAGATCAGAAGGATGTTACACATACTCCAGAAAACAATGCCACAGCAACACCAACTATCATAAACACCAACCTAGTTCCGTACGTGACACTACATCTTGCTGCTCTGAATGGTGACTGGATGACTGCTAGAAATTTCTTGCAATTACAGCCAGAAGCTGTGAGGGCTAAGATCACAAAGGGTTCAGAAACTGCTCTTCACATTGCAGCTGGGGCAAAACAACAAGATTACATAGGGCTTCTTATTTCTGCCATAACGGCAGATCTTTATGCACTGGATATAATTCAAAAGCACCCTGAAATGGCTTTTGCTCGAGATAGAAATGGAGAGACAGCACTACATGTATTGGCTCGAAAGCCTTCAGCATGTTATAGTGGAAGTCAGCTGGGATCTTTGAAACGATGGATAACTTCGTGTAAGAAAACTCATGATATTTTTCAGACCATTCTCTGTTTTGCCTTTCTCTCTCAATATGAAAATATTGGTATGTCTGTTAAAATAGTTTCACCAAGTCAGCTAAGGGAAGCTTCAAGGCTTTCATGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

265

Amino Acids

29.32

Weight (kDa)

8.31

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35810
fragaria_vesca	FvH4_1g20460 FvH4_4g07110 FvH4_4g07110 FvH4_4g07110
malus_domestica	MD05G1166100.v1.1
prunus_persica	Prupe.1G545900_v2.0.a1 Prupe.1G545900_v2.0.a1
pyrus_communis	pycom05g15470 pycom05g15480
rosa_chinensis	RchiOBHm_Chr2g0112741 RchiOBHm_Chr4g0399281 RchiOBHm_Chr5g0059341 RchiOBHm_Chr5g0059351
rosa_laevigata	RLG00000009279 RLG00000018005
rosa_multiflora	Rmu_co8188422.1_g000001 Rmu_co8394355.1_g000001 Rmu_sc0000375.1_g000019 Rmu_sc0000375.1_g000021 Rmu_sc0003135.1_g000013 Rmu_sc0035003.1_g000001 Rmu_sc0042317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131190 Rroxscaffold_2G00131200 Rroxscaffold_5G00344220
rosa_rugosa	Rorug02G0182000 Rorug04G0016000 Rorug04G0016100 Rorug04G0016200
rosa_samantha	Rh2AG236700 Rh2BG249500 Rh2BG249600 Rh2CG240700 Rh2DG244100 Rh2DG244200 Rh4AG093900 Rh4BG091300 Rh4CG102100 Rh4DG086000 Rh5AG386900 Rh5DG414600 Rh7DG334500
rosa_wichuraiana	Rw2G018300 Rw4G007700 Rw5G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	34, 193
AccII	CGCG	1 cut(s)	132
AclWI	GGATC	1 cut(s)	646
AcsI	RAATTY	2 cut(s)	156, 382
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	5 cut(s)	124, 171, 223, 243, 332
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	53, 536, 646, 780
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	6 cut(s)	110, 407, 458, 634, 766, 776
AluI	AGCT	6 cut(s)	110, 407, 458, 634, 766, 776
Alw21I	GWGCWC	2 cut(s)	100, 208
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	2 cut(s)	407, 440
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	2 cut(s)	44, 88
ApeKI	GCWGC	3 cut(s)	61, 350, 455
ApoI	RAATTY	2 cut(s)	156, 382
Asp700I	GAANNNNTTC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	374, 747
AvaI	CYCGRG	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	100, 208
BbvI	GCAGC	3 cut(s)	48, 337, 467
BccI	CCATC	1 cut(s)	645
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	323, 378
BfmI	CTRYAG	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	34, 193
BglI	GCCNNNNNGGC	1 cut(s)	506
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	62, 351, 456
BlsI	GCNGC	3 cut(s)	63, 352, 457
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	17, 92
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	17, 92
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	371, 528
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	73, 268, 375
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	371, 528
BseXI	GCAGC	3 cut(s)	48, 337, 467
BseYI	CCCAGC	2 cut(s)	458, 634
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	46, 90
BsiHKAI	GWGCWC	2 cut(s)	100, 208
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	16
BsiWI	CGTACG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	46, 90
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	3 cut(s)	100, 199, 208
Bsp143I	GATC	4 cut(s)	253, 420, 511, 638
Bsp68I	TCGCGA	1 cut(s)	132
BspANI	GGCC	2 cut(s)	46, 90
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	34, 193
BspPI	GGATC	1 cut(s)	646
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	371, 528
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	4 cut(s)	253, 420, 511, 638
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	119, 450
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	198, 245, 417, 767
BstF5I	GGATG	3 cut(s)	73, 268, 375
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	256, 423, 514, 641
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	253, 420, 511, 638
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 506
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	2 cut(s)	593, 618
BstSCI	CCNGG	2 cut(s)	15, 90
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	48, 337, 467
BstX2I	RGATCY	2 cut(s)	511, 638
BstYI	RGATCY	2 cut(s)	511, 638
BsuRI	GGCC	2 cut(s)	46, 90
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	73, 268, 375
BtsIMutI	CAGTG	1 cut(s)	521
BtuMI	TCGCGA	1 cut(s)	132
BveI	ACCTGC	2 cut(s)	34, 193
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	2 cut(s)	407, 440
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	5 cut(s)	123, 170, 222, 242, 331
CviAII	CATG	5 cut(s)	32, 590, 615, 677, 789
CviQI	GTAC	5 cut(s)	123, 170, 222, 242, 331
DdeI	CTNAG	4 cut(s)	198, 245, 417, 767
DpnI	GATC	4 cut(s)	255, 422, 513, 640
DpnII	GATC	4 cut(s)	253, 420, 511, 638
Eam1104I	CTCTTC	2 cut(s)	119, 450
EarI	CTCTTC	2 cut(s)	119, 450
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	5 cut(s)	35, 593, 618, 680, 792
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FatI	CATG	5 cut(s)	31, 589, 614, 676, 788
Fnu4HI	GCNGC	3 cut(s)	62, 351, 456
FokI	GGATG	3 cut(s)	60, 275, 382
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	62, 351, 456
FspBI	CTAG	2 cut(s)	323, 378
GluI	GCNGC	3 cut(s)	62, 351, 456
GsaI	CCCAGC	2 cut(s)	462, 638
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	46, 90
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	5 cut(s)	35, 593, 618, 680, 792
HindIII	AAGCTT	1 cut(s)	774
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	374, 747
Hpy188I	TCNGA	6 cut(s)	7, 201, 258, 357, 436, 690
Hpy188III	TCNNGA	6 cut(s)	118, 131, 215, 278, 563, 677
HpyAV	CCTTC	4 cut(s)	35, 80, 253, 618
HpyCH4IV	ACGT	2 cut(s)	220, 333
HpyCH4V	TGCA	5 cut(s)	29, 64, 391, 455, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 506
HpyF3I	CTNAG	4 cut(s)	198, 245, 417, 767
HpySE526I	ACGT	2 cut(s)	220, 333
Hsp92II	CATG	5 cut(s)	35, 593, 618, 680, 792
Kzo9I	GATC	4 cut(s)	253, 420, 511, 638
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	95, 211
Lsp1109I	GCAGC	3 cut(s)	48, 337, 467
MaeI	CTAG	2 cut(s)	323, 378
MaeII	ACGT	2 cut(s)	220, 333
MaeIII	GTNAC	3 cut(s)	265, 334, 362
MalI	GATC	4 cut(s)	255, 422, 513, 640
MboI	GATC	4 cut(s)	253, 420, 511, 638
MboII	GAAGA	3 cut(s)	106, 154, 437
MflI	RGATCY	2 cut(s)	511, 638
MhlI	GDGCHC	3 cut(s)	100, 199, 208
MluCI	AATT	4 cut(s)	156, 382, 392, 531
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	13, 405
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	1 cut(s)	744
MspA1I	CMGCKG	2 cut(s)	458, 634
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	17, 92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	194, 203, 397, 413, 461, 506
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	4 cut(s)	253, 420, 511, 638
NlaIII	CATG	5 cut(s)	35, 593, 618, 680, 792
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	334, 362
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	2 cut(s)	593, 618
PaeR7I	CTCGAG	1 cut(s)	561
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	607
Pfl23II	CGTACG	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	63, 352, 457
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	2 cut(s)	458, 634
PspGI	CCWGG	1 cut(s)	90
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	407, 440
PsuI	RGATCY	2 cut(s)	511, 638
PvuII	CAGCTG	2 cut(s)	458, 634
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	5 cut(s)	124, 171, 223, 243, 332
RsaNI	GTAC	5 cut(s)	123, 170, 222, 242, 331
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	62, 351, 456
Sau3AI	GATC	4 cut(s)	253, 420, 511, 638
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	17, 92
SduI	GDGCHC	3 cut(s)	100, 199, 208
SfcI	CTRYAG	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	561
SlaI	CTCGAG	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	213, 561
SmoI	CTYRAG	2 cut(s)	213, 561
Sse9I	AATT	4 cut(s)	156, 382, 392, 531
SseBI	AGGCCT	1 cut(s)	90
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	323, 378
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	15, 90
TaiI	ACGT	2 cut(s)	223, 336
TaqI	TCGA	2 cut(s)	562, 601
TasI	AATT	4 cut(s)	156, 382, 392, 531
TatI	WGTACW	3 cut(s)	122, 169, 241
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	2 cut(s)	334, 362
TseI	GCWGC	3 cut(s)	61, 350, 455
Tsp45I	GTSAC	2 cut(s)	334, 362
TspDTI	ATGAA	3 cut(s)	48, 738, 777
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	528
XapI	RAATTY	2 cut(s)	156, 382
XceI	RCATGY	2 cut(s)	593, 618
XhoI	CTCGAG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	2 cut(s)	323, 378
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.