AT5G58070
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001674
Physical Location & Seq
Reverse (-)
23500061 .. 23501416
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58070.1

Sequence Viewer

Length: 561 bp
ATGACAGAGAAGAAAGAGATGGAAGTGGTGAAAGGGCTCAACGTGGAGAGATACATGGGCCGTTGGTACGAGATTGCTTCTTTCCCATCAAGGTTTCAGCCAAAGAACGGCGTCGACACTCGCGCCACCTACACCCTTAACCCCGACGGTACCATACACGTCTTGAACGAAACGTGGAGCAACGGGAAGAGGGGTTTTATCGAAGGCAGCGCCTATAAGGCCGATCCTAAAAGCGACGAAGCCAAGCTCAAAGTCAAGTTCTATGTCCCTCCTTTCCTCCCAATCATTCCCGTCACCGGAGACTACTGGGTGCTCTACATCGATCCTGACTACCAGCACGCTCTCATTGGCCAGCCTTCCAGGAGTTATCTCTGGATATTGAGCAGGACGGCGCAAATGGAGGAAGAGACGTATAAGCAGCTGGTGGAGAAGGCAGTGGAGGAAGGTTATGACATCAGCAAGCTTCACAAGACTCCTCAGAGTGACACACCACCTGAGTCCAACACTGCCCCTGAAGACTCCAAGGGCGTTTGGTGGTTCAAATCTCTCTTCGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006873 GO:0006875 GO:0006883 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009898 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010286 GO:0010431 GO:0012505 GO:0016020 GO:0019725 GO:0021700 GO:0022414 GO:0030002 GO:0030003 GO:0030004 GO:0030054 GO:0030320 GO:0030644 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0042538 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0047484 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050801 GO:0050826 GO:0050896 GO:0055044 GO:0055064 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071944 GO:0080134 GO:0098552 GO:0098562 GO:0098588 GO:0098771 GO:0098805 GO:1901000 GO:1901002 GO:1901562 GO:1901700 GO:1902882 GO:1902884
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

186

Amino Acids

21.43

Weight (kDa)

5.98

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipocalin_2 PF08212 13 - 160 8.6e-57 Lipocalin-like domain
Lipocalin PF00061 20 - 162 7.2e-08 Lipocalin / cytosolic fatty-acid binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 123
AclWI GGATC 2 cut(s) 218, 317
AcoI YGGCCR 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 68, 151
AfiI CCNNNNNNNGG 2 cut(s) 107, 296
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 2 cut(s) 166, 541
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 3 cut(s) 247, 421, 463
AluI AGCT 3 cut(s) 247, 421, 463
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 294, 401
AlwI GGATC 2 cut(s) 218, 317
AoxI GGCC 3 cut(s) 58, 219, 349
ApeKI GCWGC 2 cut(s) 207, 418
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 3 cut(s) 125, 212, 394
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 40, 286
BalI TGGCCA 1 cut(s) 351
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 219, 430
BccI CCATC 2 cut(s) 13, 94
BceAI ACGGC 3 cut(s) 45, 124, 405
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 294, 401
BfoI RGCGCY 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 2 cut(s) 208, 419
BlsI GCNGC 2 cut(s) 209, 420
Bme1390I CCNGG 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 296
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 107, 296
BseMII CTCAG 2 cut(s) 486, 491
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 2 cut(s) 219, 430
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 60, 221, 351
BshNI GGYRCC 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 107, 296
BsmAI GTCTC 2 cut(s) 294, 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 60, 221, 351
Bsp1286I GDGCHC 2 cut(s) 39, 315
Bsp143I GATC 2 cut(s) 223, 322
BspANI GGCC 3 cut(s) 60, 221, 351
BspCNI CTCAG 2 cut(s) 487, 490
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 2 cut(s) 218, 317
BspT107I GGYRCC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 2 cut(s) 223, 322
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 3 cut(s) 182, 399, 554
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 339, 353, 461
BstDEI CTNAG 2 cut(s) 477, 495
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 125, 212, 394
BstKTI GATC 2 cut(s) 226, 325
BstMAI GTCTC 2 cut(s) 294, 401
BstMBI GATC 2 cut(s) 223, 322
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 219, 430
BstV2I GAAGAC 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 3 cut(s) 60, 221, 351
BsuTUI ATCGAT 1 cut(s) 321
BtrI CACGTC 1 cut(s) 160
BtsI GCAGTG 2 cut(s) 441, 504
BtsIMutI CAGTG 2 cut(s) 441, 504
Cac8I GCNNGC 3 cut(s) 339, 353, 461
CfoI GCGC 3 cut(s) 125, 212, 394
Cfr13I GGNCC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 67, 150
CviAII CATG 1 cut(s) 55
CviQI GTAC 2 cut(s) 67, 150
DdeI CTNAG 2 cut(s) 477, 495
DpnI GATC 2 cut(s) 225, 324
DpnII GATC 2 cut(s) 223, 322
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 182, 399, 554
EarI CTCTTC 3 cut(s) 182, 399, 554
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 56, 155, 216, 264, 414, 450
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 208, 419
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 208, 419
GlaI GCGC 3 cut(s) 124, 211, 393
GluI GCNGC 2 cut(s) 208, 419
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 60, 221, 351
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 100
HhaI GCGC 3 cut(s) 125, 212, 394
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 3 cut(s) 123, 210, 392
HinP1I GCGC 3 cut(s) 123, 210, 392
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 472, 497, 518
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 40, 286
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 3 cut(s) 163, 326, 373
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 3 cut(s) 116, 149, 239
HpyAV CCTTC 4 cut(s) 197, 366, 424, 437
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 4 cut(s) 42, 159, 173, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 477, 495
HpySE526I ACGT 4 cut(s) 42, 159, 173, 410
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 3 cut(s) 123, 210, 392
KpnI GGTACC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 223, 322
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 2 cut(s) 219, 430
MaeII ACGT 4 cut(s) 42, 159, 173, 410
MaeIII GTNAC 2 cut(s) 292, 482
MalI GATC 2 cut(s) 225, 324
MboI GATC 2 cut(s) 223, 322
MboII GAAGA 5 cut(s) 22, 199, 416, 527, 541
MhlI GDGCHC 2 cut(s) 39, 315
MlsI TGGCCA 1 cut(s) 351
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 3 cut(s) 466, 506, 512
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 6 cut(s) 183, 279, 287, 394, 433, 486
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 223, 322
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 292, 482
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 2 cut(s) 209, 420
PleI GAGTC 3 cut(s) 466, 505, 512
PpsI GAGTC 3 cut(s) 466, 505, 512
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 2 cut(s) 68, 151
RsaNI GTAC 2 cut(s) 67, 150
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 208, 419
Sau3AI GATC 2 cut(s) 223, 322
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 3 cut(s) 466, 506, 512
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 2 cut(s) 39, 315
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 4 cut(s) 45, 162, 176, 413
TaqI TCGA 3 cut(s) 114, 201, 321
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 441, 511
TseFI GTSAC 2 cut(s) 292, 482
TseI GCWGC 2 cut(s) 207, 418
Tsp45I GTSAC 2 cut(s) 292, 482
TspRI CASTG 2 cut(s) 441, 511
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.