Rh2CG016200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001674
Physical Location & Seq
Forward (+)
1269528 .. 1270262
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG016200.1

Sequence Viewer

Length: 357 bp
ATGGTGGTTTCACTCCTAAAAGTCGTTTATTTAAAAAAGAAAGCTTGTTTATCTGGAACCCATCAATCGAATTCTACAAAGAAATACTTGTTGAAGGCTTTTATCTTCCATTGGGAGTTTCCATGCGTGGTTTTGGCCATGTCTCTGGCACCGATTGACGACTATAAAGTTGTGTTAAGAGGGAAGACGCCGAGGGAGGTCAACCTCTTCTCGTTGAGAGCTGAGACATGGAAATCAGTTAAATCCCCTACGAAAGGCACTACGCATAGGAAGGGGCTGTTTTTGAGAGAGGCACTTCATTGGCTAGCTTATGACGAGACAACACTGCTCCTTTTAAGTATTCCGGACTACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

9.73

Isoelectric Point (pI)

24.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 3 cut(s) 44, 221, 308
AluI AGCT 3 cut(s) 44, 221, 308
Alw26I GTCTC 3 cut(s) 147, 218, 311
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 191
BccI CCATC 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 147, 218, 311
BfaI CTAG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 58, 150
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 3 cut(s) 147, 218, 311
BsnI GGCC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 343
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 58, 150
BspOI GCTAGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 252
BstMAI GTCTC 3 cut(s) 147, 218, 311
BstV2I GAAGAC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuRI GGCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 306
CseI GACGC 1 cut(s) 196
CviAII CATG 3 cut(s) 123, 139, 228
CviJI RGCY 7 cut(s) 44, 98, 137, 221, 277, 304, 308
CviKI_1 RGCY 7 cut(s) 44, 98, 137, 221, 277, 304, 308
DdeI CTNAG 1 cut(s) 222
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 70
FaeI CATG 3 cut(s) 126, 142, 231
FaiI YATR 6 cut(s) 124, 140, 165, 229, 267, 312
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 3 cut(s) 122, 138, 227
FspBI CTAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 3 cut(s) 126, 142, 231
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 54, 344
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 88, 265
HpyF3I CTNAG 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 3 cut(s) 126, 142, 231
Kpn2I TCCGGA 1 cut(s) 343
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 2 cut(s) 39, 131
MaeI CTAG 1 cut(s) 305
MboII GAAGA 3 cut(s) 97, 196, 199
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 70
MluNI TGGCCA 1 cut(s) 137
MnlI CCTC 5 cut(s) 173, 186, 190, 215, 283
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 137
MseI TTAA 4 cut(s) 32, 176, 240, 335
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 1 cut(s) 344
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 3 cut(s) 126, 142, 231
NlaIV GGNNCC 2 cut(s) 58, 150
NmeAIII GCCGAG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 58, 150
SaqAI TTAA 4 cut(s) 32, 176, 240, 335
SetI ASST 5 cut(s) 46, 201, 207, 223, 310
Sse9I AATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 305
TaqI TCGA 1 cut(s) 68
TasI AATT 1 cut(s) 70
Tru1I TTAA 4 cut(s) 32, 176, 240, 335
Tru9I TTAA 4 cut(s) 32, 176, 240, 335
TscAI CASTG 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 287
TspRI CASTG 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 70
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.