Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Reverse (-)

1105714 .. 1108300

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCGAATCAAGGAGCAAACTTGGCGAGGAAGAAAGCATTATGATTATGATTTGAATAGGAGCAAGCTTGGAGAGGACGAAAAAGAATTTTGTGGTTGTAGCTTGAAAGAAGAAGCAAACCATGAATACAAATCGCTAGACTTGGAGTTGGGTGAGCTAAAGGAGCTTAAGAATTCTTCGCTCAGATTCGGACAGCTGAACACCCCATTCAAGAAACCGGGCCATGCTCTCTGCTTTTTAGGCTCTTGCAATGGTATGTTTGGCTGTTTGACCTTAAAGGAAGTCATGAGAGAATACGGAAACAGTGATTCCTGGACTAGATCCTTCAGCCTAAAGTTTTCCGATAAGCAGACCTATTTGCTTGAACCGATCTTGCTTATGGAAACTTGTGCATTTGTGATGAACAGGCCGAAAAAGTTTGATCAAGACAAAGAAGAGACGCCTGACATATATATGGTTCGTGATCATAATGAACAAGAGAACGCCAGCATGTATATTCTTCACATTAATCCACCAGACATGATTGTATATGAAGAGAGTCTTAGTGAGTATCATGGAGTGGAAAGAGAAGAAGGTCAAAAGGCTCCAATCCTCTACCACAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

203

Amino Acids

23.71

Weight (kDa)

5.57

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	86, 172
AcuI	CTGAAG	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	440
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	55, 106, 211, 365
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	5 cut(s)	67, 102, 157, 166, 196
AluI	AGCT	5 cut(s)	67, 102, 157, 166, 196
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	220, 407
ApoI	RAATTY	2 cut(s)	86, 172
AseI	ATTAAT	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	2 cut(s)	421, 463
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	137, 318
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	219, 313
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	2 cut(s)	219, 313
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	222, 409
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	222, 409
Bsp143I	GATC	4 cut(s)	320, 369, 421, 463
BspANI	GGCC	2 cut(s)	222, 409
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	256
BssMI	GATC	4 cut(s)	320, 369, 421, 463
BssNI	GRCGYC	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	429, 528
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	65, 487
BstDEI	CTNAG	2 cut(s)	182, 542
BstKTI	GATC	4 cut(s)	323, 372, 424, 466
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	4 cut(s)	320, 369, 421, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 163, 240
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	217, 311
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	222, 409
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	65, 487
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	448
CspCI	CAANNNNNGTGG	1 cut(s)	587
CviAII	CATG	6 cut(s)	122, 224, 286, 490, 520, 554
DdeI	CTNAG	2 cut(s)	182, 542
DpnI	GATC	4 cut(s)	322, 371, 423, 465
DpnII	GATC	4 cut(s)	320, 369, 421, 463
Eam1104I	CTCTTC	2 cut(s)	429, 528
EarI	CTCTTC	2 cut(s)	429, 528
Eco57I	CTGAAG	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	6 cut(s)	125, 227, 289, 493, 523, 557
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	6 cut(s)	121, 223, 285, 489, 519, 553
FbaI	TGATCA	2 cut(s)	421, 463
FspBI	CTAG	2 cut(s)	137, 318
HaeIII	GGCC	2 cut(s)	222, 409
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	6 cut(s)	125, 227, 289, 493, 523, 557
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	4 cut(s)	6, 186, 308, 538
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	185, 191, 343
Hpy188III	TCNNGA	4 cut(s)	211, 286, 425, 461
HpyAV	CCTTC	2 cut(s)	334, 566
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	249, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 163, 240
HpyF3I	CTNAG	2 cut(s)	182, 542
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	6 cut(s)	125, 227, 289, 493, 523, 557
Ksp22I	TGATCA	2 cut(s)	421, 463
Kzo9I	GATC	4 cut(s)	320, 369, 421, 463
LmnI	GCTCC	4 cut(s)	13, 60, 163, 589
LpnPI	CCDG	7 cut(s)	231, 298, 325, 391, 456, 499, 528
MaeI	CTAG	2 cut(s)	137, 318
MalI	GATC	4 cut(s)	322, 371, 423, 465
MboI	GATC	4 cut(s)	320, 369, 421, 463
MboII	GAAGA	7 cut(s)	42, 122, 168, 446, 491, 545, 581
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	2 cut(s)	86, 172
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	3 cut(s)	20, 67, 602
MseI	TTAA	3 cut(s)	168, 275, 507
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	219, 313
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	22, 163, 240
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	320, 369, 421, 463
NlaIII	CATG	6 cut(s)	125, 227, 289, 493, 523, 557
NlaIV	GGNNCC	1 cut(s)	585
NspI	RCATGY	1 cut(s)	493
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	6, 186, 308
PfoI	TCCNGGA	1 cut(s)	311
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	168, 275, 507
Sau3AI	GATC	4 cut(s)	320, 369, 421, 463
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	219, 313
SetI	ASST	8 cut(s)	69, 104, 159, 168, 198, 275, 356, 577
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	86, 172
SspMI	CTAG	2 cut(s)	137, 318
StyD4I	CCNGG	2 cut(s)	217, 311
TaaI	ACNGT	1 cut(s)	305
TasI	AATT	2 cut(s)	86, 172
TfiI	GAWTC	3 cut(s)	6, 186, 308
Tru1I	TTAA	3 cut(s)	168, 275, 507
Tru9I	TTAA	3 cut(s)	168, 275, 507
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	138, 416, 486, 546
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	2 cut(s)	86, 172
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	2 cut(s)	137, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.