FvH4_1g01260
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001674
Physical Location & Seq
Forward (+)
634152 .. 635441
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01260.t1

Sequence Viewer

Length: 552 bp
ATGGCAAATAAAACCATGGAAGTTGTGAAAGGCCTAGACGTGCAGAGGTACATGGGTCGCTGGTATGAAATTGCTTCATTCCCATCAAGGTTTCAGCCCAAGAATGGAGAAAACACAAGGGCAACCTACACTCTCAAAGAAGATGGCACTGTCGATGTGCTCAATGAGACCTGGACTAATGGGTCTAGAGGCTTCATACAAGGCACTGCTTACAAAGCTGACCCTTCAAGTGATGAGGCAAAGCTCAAAGTCAGATTCTATGTCCCTCCATTTCTGCCCATCATCCCTATCACTGGGGACTACTGGGTTTTGTATATTGATGATGATTATCAGTATGCTCTCGTTGGCCAACCTAGCAGAAACTATCTTTGGATATTGAGCAGGAAGCCTCATCTGGATGAGGAGATTTACAACCAGCTAGTACAGAAGGCTAAGGATGAGGAGTATGATGTGAGCAAGCTCCAAAAGACACCACAGAGTGAGAGTCCACCAGAAGATGCACCTGTTGACACCAAGGGTATCTGGTGGATCAAGTCCCTGTTGGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

184

Amino Acids

21.15

Weight (kDa)

5.31

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipocalin_2 PF08212 12 - 159 3e-55 Lipocalin-like domain
Lipocalin PF00061 19 - 160 8.5e-09 Lipocalin / cytosolic fatty-acid binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 346
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 2 cut(s) 50, 423
AfiI CCNNNNNNNGG 2 cut(s) 104, 293
AgsI TTSAA 1 cut(s) 228
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AluBI AGCT 4 cut(s) 218, 244, 418, 460
AluI AGCT 4 cut(s) 218, 244, 418, 460
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 536
AoxI GGCC 2 cut(s) 31, 346
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BalI TGGCCA 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 3 cut(s) 91, 137, 287
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 4 cut(s) 35, 186, 354, 419
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 2 cut(s) 303, 313
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 2 cut(s) 303, 313
Bpu10I CCTNAGC 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 15, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 293
Bse1I ACTGG 2 cut(s) 298, 308
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 15, 513
BseGI GGATG 3 cut(s) 282, 403, 442
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 104, 293
BseNI ACTGG 2 cut(s) 298, 308
BseRI GAGGAG 2 cut(s) 416, 455
BsgI GTGCAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 33, 348
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 3 cut(s) 248, 311, 520
BslI CCNNNNNNNGG 2 cut(s) 104, 293
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 3 cut(s) 248, 311, 520
BsnI GGCC 2 cut(s) 33, 348
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 15
BspANI GGCC 2 cut(s) 33, 348
BspPI GGATC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 2 cut(s) 298, 308
BssECI CCNNGG 2 cut(s) 15, 513
BssMI GATC 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 15, 513
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 282, 403, 442
BstKTI GATC 1 cut(s) 531
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 528
BstMWI GCNNNNNNNGC 2 cut(s) 215, 354
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BsuRI GGCC 2 cut(s) 33, 348
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 3 cut(s) 282, 403, 442
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 147, 204, 291
Cac8I GCNNGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 49, 422
CviAII CATG 2 cut(s) 16, 52
CviQI GTAC 2 cut(s) 49, 422
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 530
DpnII GATC 1 cut(s) 528
DraIII CACNNNGTG 1 cut(s) 479
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 15, 513
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 15, 513
ErhI CCWWGG 2 cut(s) 15, 513
FaeI CATG 2 cut(s) 19, 55
FaiI YATR 8 cut(s) 17, 53, 66, 197, 261, 315, 336, 447
FaqI GGGAC 3 cut(s) 248, 311, 520
FatI CATG 2 cut(s) 15, 51
FokI GGATG 3 cut(s) 269, 410, 449
FspBI CTAG 4 cut(s) 35, 186, 354, 419
HaeIII GGCC 2 cut(s) 33, 348
Hin1II CATG 2 cut(s) 19, 55
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 2 cut(s) 255, 484
Hpy166II GTNNAC 2 cut(s) 488, 508
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 186, 395
Hpy8I GTNNAC 2 cut(s) 488, 508
HpyAV CCTTC 2 cut(s) 234, 421
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 43, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 354
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 19, 55
Kzo9I GATC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 465
LweI GCATC 1 cut(s) 487
MaeI CTAG 4 cut(s) 35, 186, 354, 419
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 530
MboI GATC 1 cut(s) 528
MboII GAAGA 2 cut(s) 152, 506
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 1 cut(s) 493
MnlI CCTC 7 cut(s) 39, 182, 229, 276, 394, 399, 433
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 215, 354
NcoI CCATGG 1 cut(s) 15
NdeII GATC 1 cut(s) 528
NlaIII CATG 2 cut(s) 19, 55
PceI AGGCCT 1 cut(s) 33
PfeI GAWTC 1 cut(s) 255
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
RsaI GTAC 2 cut(s) 50, 423
RsaNI GTAC 2 cut(s) 49, 422
RseI CAYNNNNRTG 1 cut(s) 396
Sau3AI GATC 1 cut(s) 528
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 33
SspMI CTAG 4 cut(s) 35, 186, 354, 419
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 2 cut(s) 15, 513
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 3 cut(s) 154, 211, 298
TspDTI ATGAA 3 cut(s) 66, 81, 184
TspRI CASTG 3 cut(s) 154, 211, 298
XbaI TCTAGA 1 cut(s) 185
XspI CTAG 4 cut(s) 35, 186, 354, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.