Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Reverse (-)

11569458 .. 11570820

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1155500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTGGATCAAGTTCAACCATTCACACTCCACGTGTAAGGCTCATAAAGCACCACGTCCCCCTCCTTCCAATACACCTTTTGCCACCTCAACACACCTTATCCTGTTACAAAACCCCCACCGAAAAATTGAAAATTCGCAAATTCCCGCACCAATTCCTCACTCGCTCTCTCAAAAACCAGAACACAAACACTTCATCTGCAACAATGGCGACGAAGAAGGCGATGGAAGTCGTGAAGGGCCTGGATCTGCAGCGCTACATGGGGCGGTGGTACGAGATTGCCTCCGTTCCGTCGCGGTTTCAGCCCAAGAACGGCGAGAACACGCGTGCCACCTACACTCTGAAAGACGACGGCACCGTGAATGTGCTGAACGAGACTTGGACCGACGGGAAGAGGGGGTTCATCGAGGGCACCGCCTACAAGGCGGACCCGAATAGCGACGAGGCGAAACTGAAGGTGAGGTTTTATGTTCCGCCATTTCTGCCGATCATTCCTGTCACGGGGGATTACTGGGTTTTGTTCATTGACGAGGATTATCAGTACGCTTTGATTGGCCAGCCTAGCAGGAATTCCCTTTGGATATTGAGCAGGCGGCCTCATCTGGATGAAGAAATATACAACCAGCTGGTCCAAAGGGCGGCGGACGAGGGCTACGACGTGAGCAAACTCCACAAGACGCGGCAGAGCGAGAGTCCGCCGGAGGGAGAAGAAGGCCCCAAAGACACCAAGGGCATCTGGTGGTTCAAATCCATCTTCGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

256

Amino Acids

29.35

Weight (kDa)

9.34

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipocalin_2	PF08212	82 - 229	5.6e-54	Lipocalin-like domain
Lipocalin	PF00061	89 - 230	1.3e-07	Lipocalin / cytosolic fatty-acid binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	356, 413
AccII	CGCG	3 cut(s)	298, 328, 682
AclWI	GGATC	2 cut(s)	16, 255
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	135, 143, 571
AcuI	CTGAAG	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	275, 545
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	4 cut(s)	314, 503, 640, 704
AflIII	ACRYGT	2 cut(s)	34, 326
AgsI	TTSAA	3 cut(s)	18, 133, 748
AjiI	CACGTC	2 cut(s)	58, 661
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	1 cut(s)	628
AluI	AGCT	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	16, 255
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	4 cut(s)	241, 556, 596, 715
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	3 cut(s)	135, 143, 571
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	5 cut(s)	241, 384, 430, 631, 716
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	3 cut(s)	384, 430, 631
BaeGI	GKGCMC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	2 cut(s)	356, 413
BbrPI	CACGTG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	220, 761
BceAI	ACGGC	2 cut(s)	331, 370
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	259
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	4 cut(s)	254, 596, 642, 683
BlsI	GCNGC	4 cut(s)	255, 597, 643, 684
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	3 cut(s)	384, 430, 631
BmgBI	CACGTC	2 cut(s)	58, 661
BmgT120I	GGNCC	5 cut(s)	241, 384, 430, 631, 716
BmiI	GGNNCC	4 cut(s)	358, 415, 432, 718
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	729
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 503, 640, 704
Bse1I	ACTGG	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	4 cut(s)	314, 503, 640, 704
BseNI	ACTGG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	3 cut(s)	298, 328, 682
BshFI	GGCC	4 cut(s)	243, 558, 598, 717
BshNI	GGYRCC	2 cut(s)	356, 413
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	4 cut(s)	314, 503, 640, 704
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	4 cut(s)	243, 558, 598, 717
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	8, 247, 489
BspANI	GGCC	4 cut(s)	243, 558, 598, 717
BspFNI	CGCG	3 cut(s)	298, 328, 682
BspLI	GGNNCC	4 cut(s)	358, 415, 432, 718
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	16, 255
BspT107I	GGYRCC	2 cut(s)	356, 413
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	3 cut(s)	8, 247, 489
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	330, 560, 593
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	3 cut(s)	298, 328, 682
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	11, 250, 492
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	8, 247, 489
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 209, 304, 425, 484, 564
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	416
BstUI	CGCG	3 cut(s)	298, 328, 682
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	243, 558, 598, 717
BtgZI	GCGATG	1 cut(s)	239
BtrI	CACGTC	2 cut(s)	58, 661
BtsCI	GGATG	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	330, 560, 593
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	5 cut(s)	241, 384, 430, 631, 716
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	274, 544
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	9 cut(s)	43, 243, 307, 558, 562, 598, 628, 654, 717
CviKI_1	RGCY	9 cut(s)	43, 243, 307, 558, 562, 598, 628, 654, 717
CviQI	GTAC	2 cut(s)	274, 544
DpnI	GATC	3 cut(s)	10, 249, 491
DpnII	GATC	3 cut(s)	8, 247, 489
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	4 cut(s)	443, 465, 659, 687
Eco130I	CCWWGG	1 cut(s)	729
Eco47I	GGWCC	3 cut(s)	384, 430, 631
Eco47III	AGCGCT	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	241, 716
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	1 cut(s)	265
FaiI	YATR	4 cut(s)	47, 263, 471, 619
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	254, 596, 642, 683
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	4 cut(s)	254, 596, 642, 683
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	254, 596, 642, 683
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	243, 558, 598, 717
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	1 cut(s)	688
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	345, 761
Hpy188III	TCNNGA	2 cut(s)	235, 605
Hpy99I	CGWCG	6 cut(s)	217, 298, 356, 392, 446, 662
HpyAV	CCTTC	5 cut(s)	77, 214, 232, 451, 707
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	34, 57, 660
HpyCH4V	TGCA	2 cut(s)	203, 253
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 209, 304, 425, 484, 564
HpySE526I	ACGT	3 cut(s)	34, 57, 660
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	8, 247, 489
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	744
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	3 cut(s)	34, 57, 660
MaeIII	GTNAC	2 cut(s)	107, 499
MalI	GATC	3 cut(s)	10, 249, 491
MboI	GATC	3 cut(s)	8, 247, 489
MboII	GAAGA	5 cut(s)	229, 406, 623, 722, 748
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	5 cut(s)	128, 135, 143, 155, 571
MluI	ACGCGT	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	298, 328, 682
MwoI	GCNNNNNNNGC	6 cut(s)	49, 209, 304, 425, 484, 564
NdeII	GATC	3 cut(s)	8, 247, 489
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	4 cut(s)	358, 415, 432, 718
NmuCI	GTSAC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	3 cut(s)	221, 357, 654
PkrI	GCNGC	4 cut(s)	255, 597, 643, 684
PleI	GAGTC	1 cut(s)	702
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	4 cut(s)	358, 415, 432, 718
PspPI	GGNCC	5 cut(s)	241, 384, 430, 631, 716
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	2 cut(s)	275, 545
RsaNI	GTAC	2 cut(s)	274, 544
RseI	CAYNNNNRTG	1 cut(s)	606
SatI	GCNGC	4 cut(s)	254, 596, 642, 683
Sau3AI	GATC	3 cut(s)	8, 247, 489
Sau96I	GGNCC	5 cut(s)	241, 384, 430, 631, 716
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	744
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	3 cut(s)	384, 430, 631
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	5 cut(s)	128, 135, 143, 155, 571
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	37, 60, 663
TaqI	TCGA	1 cut(s)	408
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	128, 135, 143, 155, 571
TauI	GCSGC	3 cut(s)	598, 644, 685
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	4 cut(s)	186, 394, 514, 624
TspGWI	ACGGA	2 cut(s)	277, 282
VpaK11BI	GGWCC	3 cut(s)	384, 430, 631
XapI	RAATTY	3 cut(s)	135, 143, 571
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.