Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Forward (+)

1125289 .. 1125794

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGGTGCCTTGTAGTAGTATTCTGAACTACTTGACTTGTGAAAGCCGTTTGGGAGTTTCTTGTGAAGGATGCCTGTATATAGTGGATTATAGTCGCCTGTTTGAGCCTAGGTGGATAGATTATTTTGTTGATTTTTGGGTCATGAGAGAATACGGCAACAGTGATTCCTGGACCAGATCCTTCAGCCTAAGGCCGAAGAAGTTTGATCAAGACAAAGAAGAGATGCCTGATCACATGTATATGATTCATGATCAAAATAAACAAGAGAACGCCAGCATGTATATTCTTCACAGTAATTCCCCAGACATGATCGTATATGAAGAGAGTGAGACTGAGAGTCTCAGTGAGTATCATGGGGTGGAAAAGGCTTTAATCCTCTATGTACCACAAGGCTTGATAACGCTGAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

139

Amino Acids

16.39

Weight (kDa)

4.82

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	237
AhdI	GACNNNNNGTC	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	326, 347
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	174
AvrII	CCTAGG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	7
BceAI	ACGGC	2 cut(s)	33, 172
BciT130I	CCWGG	1 cut(s)	172
BclI	TGATCA	3 cut(s)	208, 232, 253
BcoDI	GTCTC	2 cut(s)	326, 347
BfaI	CTAG	1 cut(s)	111
BlnI	CCTAGG	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	174
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	62, 216
BsaJI	CCNNGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	327, 358
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	7
BsmAI	GTCTC	2 cut(s)	326, 347
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	179, 208, 232, 253, 312
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	328, 357
BspHI	TCATGA	2 cut(s)	144, 250
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	5 cut(s)	179, 208, 232, 253, 312
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	164, 296
Bst6I	CTCTTC	2 cut(s)	216, 318
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	191, 336, 344
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	5 cut(s)	182, 211, 235, 256, 315
BstMAI	GTCTC	2 cut(s)	326, 347
BstMBI	GATC	5 cut(s)	179, 208, 232, 253, 312
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	2 cut(s)	241, 283
BstSCI	CCNGG	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	169, 352
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	2 cut(s)	144, 250
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	386
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	6 cut(s)	145, 238, 251, 280, 310, 356
CviJI	RGCY	6 cut(s)	48, 109, 189, 196, 371, 396
CviKI_1	RGCY	6 cut(s)	48, 109, 189, 196, 371, 396
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	191, 336, 344
DpnI	GATC	5 cut(s)	181, 210, 234, 255, 314
DpnII	GATC	5 cut(s)	179, 208, 232, 253, 312
DriI	GACNNNNNGTC	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	216, 318
Eam1105I	GACNNNNNGTC	1 cut(s)	339
EarI	CTCTTC	2 cut(s)	216, 318
Eco130I	CCWWGG	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	6 cut(s)	148, 241, 254, 283, 313, 359
FatI	CATG	6 cut(s)	144, 237, 250, 279, 309, 355
FbaI	TGATCA	3 cut(s)	208, 232, 253
FokI	GGATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	6 cut(s)	148, 241, 254, 283, 313, 359
HinfI	GANTC	3 cut(s)	167, 247, 340
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	145, 212, 251
HpyAV	CCTTC	2 cut(s)	62, 193
HpyCH4III	ACNGT	2 cut(s)	164, 296
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	191, 336, 344
Hsp92II	CATG	6 cut(s)	148, 241, 254, 283, 313, 359
Ksp22I	TGATCA	3 cut(s)	208, 232, 253
Kzo9I	GATC	5 cut(s)	179, 208, 232, 253, 312
LpnPI	CCDG	8 cut(s)	89, 113, 157, 184, 190, 243, 289, 318
LweI	GCATC	2 cut(s)	62, 216
MaeI	CTAG	1 cut(s)	111
MalI	GATC	5 cut(s)	181, 210, 234, 255, 314
MboI	GATC	5 cut(s)	179, 208, 232, 253, 312
MboII	GAAGA	4 cut(s)	211, 233, 281, 335
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
NdeII	GATC	5 cut(s)	179, 208, 232, 253, 312
NlaIII	CATG	6 cut(s)	148, 241, 254, 283, 313, 359
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	2 cut(s)	241, 283
PagI	TCATGA	2 cut(s)	144, 250
PciI	ACATGT	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	167, 247
PfoI	TCCNGGA	1 cut(s)	170
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	5 cut(s)	179, 208, 232, 253, 312
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	2 cut(s)	9, 116
SfaNI	GCATC	2 cut(s)	62, 216
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	164, 296
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	167, 247
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	2 cut(s)	169, 352
TspDTI	ATGAA	2 cut(s)	239, 336
TspRI	CASTG	2 cut(s)	169, 352
VpaK11BI	GGWCC	1 cut(s)	174
XceI	RCATGY	2 cut(s)	241, 283
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.