Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Reverse (-)

91315367 .. 91316423

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAAAGAAAACCATGGAAGTTGTGAAAGGCCTAGACTTGCAGAGGTACATGGGCCGCTGGTATGAAATTGCTTCATTCCCATCAAGGTTTCAGCCCAAGAATGGAGAGAACACAAGAGCCACCTACACTCTGAAAGAAGATGGCACTGTGAATGTGCTCAATGAGACCTTCACTAATGGGGTCAGAAGCTCCATAGAAGGCACTGCCTACAAGGCTGACCCTTCAAGTGATGAGGCAAAGCTCAAAGTCAAATTCTATCTCCCTCCATTTTTGCCCATCATCCCTATTACTGGGGATTACTGGGTTTTGTATATTGATGAGGATTATCAGTATGCTCTCATTGGTCAACCTAGCAGAAATTACCTTTGGATATTGAGCAGGAACCCTCATCTAGATGAGGAGATTTACAACCAGCTAGTGCAGAAAGCCAAGGATGAGGACTATGATGTGAGCAAACTCCACAAGACACCACAGAGTGAGAATCCTCCAGAAGATGCACCCACGGACACAAAGGGTACCTGGTGGCTCAAGTCCCTCTTTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

183

Amino Acids

21.17

Weight (kDa)

5.5

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipocalin_2	PF08212	12 - 159	1.6e-54	Lipocalin-like domain
Lipocalin	PF00061	19 - 160	9.9e-09	Lipocalin / cytosolic fatty-acid binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	518
AciI	CCGC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	50, 520
AfiI	CCNNNNNNNGG	2 cut(s)	104, 293
AgsI	TTSAA	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	521
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	3 cut(s)	192, 244, 418
AluI	AGCT	3 cut(s)	192, 244, 418
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	31, 55
ApoI	RAATTY	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	3 cut(s)	91, 137, 287
BciT130I	CCWGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	4 cut(s)	35, 354, 395, 419
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	386, 520
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	2 cut(s)	303, 313
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	2 cut(s)	303, 313
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	15, 432, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 293
Bse1I	ACTGG	2 cut(s)	298, 308
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	15, 432, 504
BseGI	GGATG	2 cut(s)	282, 442
BseLI	CCNNNNNNNGG	2 cut(s)	104, 293
BseNI	ACTGG	2 cut(s)	298, 308
BseRI	GAGGAG	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	33, 57
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	104, 293
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	33, 57
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	2 cut(s)	33, 57
BspLI	GGNNCC	2 cut(s)	386, 520
BspT107I	GGYRCC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	298, 308
BssECI	CCNNGG	3 cut(s)	15, 432, 504
BssT1I	CCWWGG	2 cut(s)	15, 432
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	151
BstDSI	CCRYGG	2 cut(s)	15, 504
BstF5I	GGATG	2 cut(s)	282, 442
BstMAI	GTCTC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	33, 57
BtgI	CCRYGG	2 cut(s)	15, 504
BtsCI	GGATG	2 cut(s)	282, 442
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	147, 204
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	49, 519
CviAII	CATG	2 cut(s)	16, 52
CviQI	GTAC	2 cut(s)	49, 519
DraIII	CACNNNGTG	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	15, 432
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	521
EcoT14I	CCWWGG	2 cut(s)	15, 432
ErhI	CCWWGG	2 cut(s)	15, 432
FaeI	CATG	2 cut(s)	19, 55
FaiI	YATR	7 cut(s)	17, 53, 66, 197, 315, 336, 447
FalI	AAGNNNNNCTT	1 cut(s)	524
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	15, 51
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	2 cut(s)	269, 449
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	4 cut(s)	35, 354, 395, 419
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	33, 57
Hin1II	CATG	2 cut(s)	19, 55
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	135, 188
Hpy188III	TCNNGA	2 cut(s)	395, 491
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	181, 194, 234
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	43, 424, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	19, 55
KpnI	GGTACC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	8 cut(s)	46, 279, 289, 367, 428, 504, 508, 535
LweI	GCATC	1 cut(s)	487
MabI	ACCWGGT	1 cut(s)	521
MaeI	CTAG	4 cut(s)	35, 354, 395, 419
MboII	GAAGA	2 cut(s)	152, 506
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	69, 254, 361
MnlI	CCTC	9 cut(s)	39, 229, 276, 316, 394, 399, 433, 498, 548
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 55
NlaIV	GGNNCC	2 cut(s)	386, 520
PceI	AGGCCT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	386, 520
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	50, 520
RsaNI	GTAC	2 cut(s)	49, 519
RseI	CAYNNNNRTG	1 cut(s)	396
SatI	GCNGC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	69, 254, 361
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	4 cut(s)	35, 354, 395, 419
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	2 cut(s)	15, 432
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	3 cut(s)	69, 254, 361
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	484
TscAI	CASTG	2 cut(s)	154, 211
TspDTI	ATGAA	2 cut(s)	66, 81
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	154, 211
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	394
XspI	CTAG	4 cut(s)	35, 354, 395, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.