Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001674

Physical Location & Seq

Genomic Coordinates Reverse (-)

685671 .. 687576

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAAGTTCAACCATTCACACTAAGGCCCAGAAACCCCCTCGCGTCCCCGTCCTTTCACTTTACCTTTTGCTCGAAGCAAAAAACCCATTAAAACTCCGCCACCTCCACACACCTTATCCTCACAAAACCCCCCACCCAAAATTCACGAACTCCCGCACCAATTTCCTCACACACTCTCGCACAAACCAAAACACAAACACTTCATCTGCAACAATGGCGACGAAGAAGGAGATGGAAGTCGTGAAGGGCCTGGATGTGCAGCGCTACATGGGACGGTGGTACGAGATTGCCTCCTTTCCGTCGCGGTTTCAGCCCAAGAGCGGCGAGAACACGCGGGCGACGTACACTCTGAAGGAAGACGGCGCCACCGTGAATGTTTTGAACGAGACTTGGACCGATGGGAAGAGGGGGTTCATCGAGGGCACCGCCTACAAGGCTGACCCGGCGAGCGACGAGGCGAAGCTGAAGGTGAAGTTTTATGTGCCTCCATTTCTGCCGATCATCCCTGTCGTTGGGGATTACTGGGTTTTGTTCATCGATGAGGATTATCAGTATGCGCTGATTGGCCAACCTAGCAGGAATTACCTTTGGATATTGAGCAGGCAGCCTCATCTGGATGAAGAAATATACAACCAGCTGGTTCAGAGGGCGGTGGACGAGGGTTACGACGTGAGCAAACTCCACAAGACGCCGCAGAGCGAGACTCCGCCGGAGTCGGAAGAAGGCCCCAAAGACACCAAGGGCATCTGGTGGTTCAAATCCATCCTCGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0009279 GO:0016020 GO:0019867 GO:0030312 GO:0030313 GO:0031975 GO:0044462 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

260

Amino Acids

29.74

Weight (kDa)

9.12

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipocalin_2	PF08212	85 - 233	5.5e-53	Lipocalin-like domain
Lipocalin	PF00061	92 - 234	1.4e-06	Lipocalin / cytosolic fatty-acid binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58070
fragaria_vesca	FvH4_1g01260 FvH4_1g02260 FvH4_2g05890 FvH4_7g32350
malus_domestica	MD02G1010500.v1.1 MD07G1286300.v1.1 MD15G1155500.v1.1
prunus_persica	Prupe.7G259600_v2.0.a1
pyrus_communis	pycom02g00940 pycom15g13950
rosa_chinensis	RchiOBHm_Chr2g0086031 RchiOBHm_Chr2g0086041 RchiOBHm_Chr2g0086051 RchiOBHm_Chr2g0086061 RchiOBHm_Chr2g0122651
rosa_laevigata	RLG00000015736 RLG00000015737 RLG00000015738 RLG00000015739 RLG00000015742
rosa_multiflora	Rmu_co8177264.1_g000001 Rmu_sc0003133.1_g000024 Rmu_sc0017765.1_g000004 Rmu_ssc0000355.1_g000018 Rmu_ssc0000355.1_g000019 Rmu_ssc0000355.1_g000021
rosa_roxburghii	Rroxscaffold_2G00121400 Rroxscaffold_2G00154820
rosa_rugosa	Rorug01G0465300 Rorug01G0465400 Rorug01G0465500 Rorug01G0465500 Rorug02G0241100
rosa_samantha	Rh2AG014500 Rh2AG014600 Rh2AG014700 Rh2AG014800 Rh2AG015100 Rh2AG015200 Rh2BG015000 Rh2CG015600 Rh2CG015700 Rh2CG015800 Rh2CG016200 Rh2DG016900 Rh2DG017100
rosa_wichuraiana	Rw2G001290 Rw2G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	365, 425
AccBSI	CCGCTC	1 cut(s)	324
AccII	CGCG	3 cut(s)	45, 307, 337
AciI	CCGC	9 cut(s)	100, 157, 307, 324, 337, 429, 653, 695, 710
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	374, 488
AcyI	GRCGYC	2 cut(s)	366, 692
AfaI	GTAC	2 cut(s)	284, 347
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	323, 515
AgsI	TTSAA	3 cut(s)	12, 385, 760
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	466, 640
AluI	AGCT	2 cut(s)	466, 640
Alw26I	GTCTC	2 cut(s)	383, 698
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	4 cut(s)	27, 250, 568, 727
ApeKI	GCWGC	2 cut(s)	262, 607
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	3 cut(s)	267, 368, 562
AspS9I	GGNCC	4 cut(s)	28, 250, 396, 728
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	365, 425
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	274, 619
BccI	CCATC	3 cut(s)	229, 395, 773
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	383, 698
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	2 cut(s)	268, 369
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	4 cut(s)	263, 325, 608, 695
BlsI	GCNGC	4 cut(s)	264, 326, 609, 696
Bme1390I	CCNGG	2 cut(s)	254, 446
Bme18I	GGWCC	1 cut(s)	396
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	4 cut(s)	28, 250, 396, 728
BmiI	GGNNCC	3 cut(s)	367, 427, 730
BmrFI	CCNGG	2 cut(s)	254, 446
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	756
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	4 cut(s)	278, 310, 691, 723
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	540
BsaHI	GRCGYC	2 cut(s)	366, 692
BsaJI	CCNNGG	2 cut(s)	741, 769
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 515
Bse1I	ACTGG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	741, 769
BseGI	GGATG	4 cut(s)	262, 504, 625, 765
BseLI	CCNNNNNNNGG	2 cut(s)	323, 515
BseNI	ACTGG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	274, 619
BsgI	GTGCAG	1 cut(s)	281
Bsh1236I	CGCG	3 cut(s)	45, 307, 337
BshFI	GGCC	4 cut(s)	29, 252, 570, 729
BshNI	GGYRCC	2 cut(s)	365, 425
BshVI	ATCGAT	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	446, 713
BslFI	GGGAC	2 cut(s)	32, 288
BslI	CCNNNNNNNGG	2 cut(s)	323, 515
BsmAI	GTCTC	2 cut(s)	383, 698
BsmFI	GGGAC	2 cut(s)	32, 288
BsnI	GGCC	4 cut(s)	29, 252, 570, 729
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	501
BspACI	CCGC	9 cut(s)	100, 157, 307, 324, 337, 429, 653, 695, 710
BspANI	GGCC	4 cut(s)	29, 252, 570, 729
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	3 cut(s)	45, 307, 337
BspLI	GGNNCC	3 cut(s)	367, 427, 730
BspT107I	GGYRCC	2 cut(s)	365, 425
BsrBI	CCGCTC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	741, 769
BssMI	GATC	1 cut(s)	501
BssNI	GRCGYC	2 cut(s)	366, 692
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	279, 373
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	366, 692
BstC8I	GCNNGC	3 cut(s)	339, 451, 605
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	262, 504, 625, 765
BstFNI	CGCG	3 cut(s)	45, 307, 337
BstH2I	RGCGCY	2 cut(s)	268, 369
BstHHI	GCGC	3 cut(s)	267, 368, 562
BstKTI	GATC	1 cut(s)	504
BstMAI	GTCTC	2 cut(s)	383, 698
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 313, 437, 446, 576
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 444
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	3 cut(s)	45, 307, 337
BstV1I	GCAGC	2 cut(s)	274, 619
BstV2I	GAAGAC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	29, 252, 570, 729
BsuTUI	ATCGAT	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	4 cut(s)	262, 504, 625, 765
Cac8I	GCNNGC	3 cut(s)	339, 451, 605
CfoI	GCGC	3 cut(s)	267, 368, 562
Cfr13I	GGNCC	4 cut(s)	28, 250, 396, 728
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	2 cut(s)	34, 700
Csp6I	GTAC	2 cut(s)	283, 346
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	9 cut(s)	29, 252, 316, 440, 466, 570, 610, 640, 729
CviKI_1	RGCY	9 cut(s)	29, 252, 316, 440, 466, 570, 610, 640, 729
CviQI	GTAC	2 cut(s)	283, 346
DdeI	CTNAG	1 cut(s)	24
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	2 cut(s)	89, 699
Eco130I	CCWWGG	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	396
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	374, 488
EcoO109I	RGGNCCY	2 cut(s)	250, 728
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	741
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	272, 483, 558, 631
FaqI	GGGAC	2 cut(s)	32, 288
FatI	CATG	1 cut(s)	270
FauI	CCCGC	2 cut(s)	164, 330
Fnu4HI	GCNGC	4 cut(s)	263, 325, 608, 695
FokI	GGATG	4 cut(s)	269, 491, 632, 752
Fsp4HI	GCNGC	4 cut(s)	263, 325, 608, 695
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	3 cut(s)	266, 367, 561
GluI	GCNGC	4 cut(s)	263, 325, 608, 695
HaeII	RGCGCY	2 cut(s)	268, 369
HaeIII	GGCC	4 cut(s)	29, 252, 570, 729
HapII	CCGG	2 cut(s)	446, 713
HgaI	GACGC	2 cut(s)	34, 700
HhaI	GCGC	3 cut(s)	267, 368, 562
Hin1I	GRCGYC	2 cut(s)	366, 692
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	3 cut(s)	265, 366, 560
HinP1I	GCGC	3 cut(s)	265, 366, 560
HinfI	GANTC	2 cut(s)	706, 716
HpaII	CCGG	2 cut(s)	446, 713
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	348, 658
Hpy188I	TCNGA	4 cut(s)	354, 648, 721, 773
Hpy188III	TCNNGA	3 cut(s)	148, 244, 617
Hpy8I	GTNNAC	2 cut(s)	348, 658
Hpy99I	CGWCG	5 cut(s)	226, 307, 346, 458, 674
HpyAV	CCTTC	5 cut(s)	223, 241, 349, 463, 719
HpyCH4III	ACNGT	2 cut(s)	279, 373
HpyCH4IV	ACGT	2 cut(s)	344, 672
HpyCH4V	TGCA	2 cut(s)	212, 262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 313, 437, 446, 576
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	344, 672
Hsp92I	GRCGYC	2 cut(s)	366, 692
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	3 cut(s)	265, 366, 560
KasI	GGCGCC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	501
Lsp1109I	GCAGC	2 cut(s)	274, 619
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	2 cut(s)	344, 672
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	1 cut(s)	503
MbiI	CCGCTC	1 cut(s)	324
MboI	GATC	1 cut(s)	501
MboII	GAAGA	5 cut(s)	238, 371, 418, 635, 734
MhlI	GDGCHC	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	3 cut(s)	143, 163, 583
MluNI	TGGCCA	1 cut(s)	570
Mly113I	GGCGCC	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	700, 725
MmeI	TCCRAC	1 cut(s)	699
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	2 cut(s)	446, 713
MspR9I	CCNGG	2 cut(s)	254, 446
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	3 cut(s)	45, 307, 337
MwoI	GCNNNNNNNGC	5 cut(s)	218, 313, 437, 446, 576
NarI	GGCGCC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	367, 427, 730
PcsI	WCGNNNNNNNCGW	3 cut(s)	341, 369, 666
PkrI	GCNGC	4 cut(s)	264, 326, 609, 696
PleI	GAGTC	2 cut(s)	700, 724
PluTI	GGCGCC	1 cut(s)	369
PpsI	GAGTC	2 cut(s)	700, 724
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	367, 427, 730
PspPI	GGNCC	4 cut(s)	28, 250, 396, 728
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	2 cut(s)	284, 347
RsaNI	GTAC	2 cut(s)	283, 346
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	4 cut(s)	263, 325, 608, 695
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	4 cut(s)	28, 250, 396, 728
SchI	GAGTC	2 cut(s)	700, 725
ScrFI	CCNGG	2 cut(s)	254, 446
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	1 cut(s)	756
SfoI	GGCGCC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	3 cut(s)	143, 163, 583
SsiI	CCGC	9 cut(s)	100, 157, 307, 324, 337, 429, 653, 695, 710
SspDI	GGCGCC	1 cut(s)	365
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	252, 444
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	279, 373
TaiI	ACGT	2 cut(s)	347, 675
TaqI	TCGA	3 cut(s)	75, 420, 540
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	143, 163, 583
TauI	GCSGC	2 cut(s)	327, 697
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	2 cut(s)	262, 607
TspDTI	ATGAA	4 cut(s)	195, 406, 526, 636
TspGWI	ACGGA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.