Rw2G001290

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001674
Physical Location & Seq
Reverse (-)
1062850 .. 1075649
12800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001290.1

Sequence Viewer

Length: 1119 bp
ATGGTGGCAGCTGCAATATTACCCGAAGAGATAATAGTGCAGATCGTGACTAGGCTACCTGTCAAATCTGTGGGGCGATGCAGATGCGTCTGTAAACGGTGGCGCACTCTATTCTCTGATCCCCAATTCGCCAAATTGCACTTCCAATGTGCTCCTAAGCATCAAACCATACTATTCTTCCGCAACTTTGACCTTGAAATCCTAAATTTGAGTCATAATCTGTCGTTCGGAAAGGAATCTCTAGTTCTCCGAAATCTGAATGTCCCCTTCGATCACCGGTGGGCTGTCTATATAGGCTCCTGCAATGGGCTGGTAGCATCATATCTCTCCCGTTCCTTCCTGCAACAGGAAAGCCTGTTTATATGGAACCCGTCCACCAGATTCTTTAAGAAATTACCCAGCCGAGGTAATACTTCTCAGATTTCCATTTTTGGGTTTGGCTATGTGTCTGCCACCGACGAGTACAAAGCTGTGATAAATGGGGAGATCTTCTCATCCAAGAGTGAATCATGGAAGCGGATTGAAACCCCTCGCTTCCGCATCGTGTCATCATGTGGTGTGCTTTTCGGTGAGGCACTCCATTGGCTATTCTATCCCGATGTTGAAAGGCAACAGGTTCCAAATCTGTATGCTTTCGATTTGGAGAAGGAGGAGTTTTCAGTAATGAAGCTGCCTAGTTCTACCGCCGGACTTTTAGACATTAACACTAGTGCTCTTCAAACACACGGGCTTAGAAACTGTTTTATATGCCAGGGTGGTGTTTCTTGTGAAGGGTGCTTGTATGTAATGGTCAAGAAGGCGCGGTGGGATTGTGGTAAGTTGGCCTATTATGAAATTGACTTTTGGGTCATGAGAGAGTATGGCAACAGTGATTCCTGGACTAGATCGTTCAGCGTAAGGATTCCCGGTCAGCCTGAGCGGAGGGACTGGTATCTTTTGCTTCAAGCAATTTCGGTTAGGGAAGCTAGTGCATTTGTGAGGAATAGATGTCCAAGGGAAGAAGAGAAGCTTGACATGTCTATAATTCATTATCGTAATGAAGAAGAGAACTCCGACATGTATATGCTTGACAATGATGCACAAGACATGGTTGTATATGAAGAGAGTCTGTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

372

Amino Acids

43.1

Weight (kDa)

7.02

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 43 4.3e-11 F-box-like
F-box PF00646 7 - 43 8.3e-11 F-box domain
FBA_1 PF07734 64 - 328 1.7e-15 F-box associated beta propeller domain
FBA_3 PF08268 72 - 271 4e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 845
AccBSI CCGCTC 1 cut(s) 919
AccII CGCG 1 cut(s) 802
AciI CCGC 6 cut(s) 181, 517, 538, 684, 802, 919
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 4 cut(s) 306, 346, 404, 432
AflIII ACRYGT 2 cut(s) 1014, 1056
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 5 cut(s) 197, 524, 605, 719, 944
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 2 cut(s) 750, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 5 cut(s) 11, 470, 670, 965, 1009
AluI AGCT 5 cut(s) 11, 470, 670, 965, 1009
Alw21I GWGCWC 2 cut(s) 154, 715
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 822
ApeKI GCWGC 3 cut(s) 8, 11, 670
ApoI RAATTY 1 cut(s) 205
AsiGI ACCGGT 1 cut(s) 276
AspLEI GCGC 2 cut(s) 105, 802
AsuC2I CCSGG 1 cut(s) 906
AsuHPI GGTGA 2 cut(s) 266, 581
Bbv12I GWGCWC 2 cut(s) 154, 715
BbvI GCAGC 2 cut(s) 20, 657
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 2 cut(s) 752, 877
BcnI CCSGG 1 cut(s) 906
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 6 cut(s) 51, 242, 675, 708, 882, 966
BglII AGATCT 1 cut(s) 486
BisI GCNGC 3 cut(s) 9, 12, 671
BlsI GCNGC 3 cut(s) 10, 13, 672
Bme1390I CCNGG 3 cut(s) 752, 877, 906
BmiI GGNNCC 3 cut(s) 298, 368, 618
BmrFI CCNGG 3 cut(s) 752, 877, 906
BmsI GCATC 6 cut(s) 68, 74, 169, 326, 549, 1066
BplI GAGNNNNNCTC 2 cut(s) 476, 508
Bpu10I CCTNAGC 2 cut(s) 156, 915
BpuMI CCSGG 1 cut(s) 906
BsaJI CCNNGG 3 cut(s) 403, 751, 992
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 4 cut(s) 306, 346, 404, 432
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 932
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 752, 877
BseDI CCNNGG 3 cut(s) 403, 751, 992
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 4 cut(s) 306, 346, 404, 432
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 431, 906
BseNI ACTGG 1 cut(s) 932
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 20, 657
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 802
BshFI GGCC 1 cut(s) 824
BshTI ACCGGT 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 154, 715
BsiSI CCGG 3 cut(s) 277, 687, 906
BslFI GGGAC 2 cut(s) 248, 938
BslI CCNNNNNNNGG 4 cut(s) 306, 346, 404, 432
BsmFI GGGAC 2 cut(s) 248, 938
BsnI GGCC 1 cut(s) 824
Bsp1286I GDGCHC 2 cut(s) 154, 715
Bsp143I GATC 5 cut(s) 42, 118, 271, 486, 884
BspACI CCGC 6 cut(s) 181, 517, 538, 684, 802, 919
BspANI GGCC 1 cut(s) 824
BspCNI CTCAG 2 cut(s) 430, 907
BspFNI CGCG 1 cut(s) 802
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 3 cut(s) 298, 368, 618
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 720
BsrBI CCGCTC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 932
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 403, 751, 992
BssMI GATC 5 cut(s) 42, 118, 271, 486, 884
BssT1I CCWWGG 1 cut(s) 992
Bst2UI CCWGG 2 cut(s) 752, 877
Bst4CI ACNGT 3 cut(s) 99, 740, 869
Bst6I CTCTTC 5 cut(s) 21, 720, 996, 1038, 1095
BstDEI CTNAG 4 cut(s) 156, 417, 731, 915
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 802
BstHHI GCGC 2 cut(s) 105, 802
BstKTI GATC 5 cut(s) 45, 121, 274, 489, 887
BstMBI GATC 5 cut(s) 42, 118, 271, 486, 884
BstNI CCWGG 2 cut(s) 752, 877
BstNSI RCATGY 2 cut(s) 1018, 1060
BstSCI CCNGG 3 cut(s) 750, 875, 904
BstUI CGCG 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 20, 657
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BsuRI GGCC 1 cut(s) 824
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 874
CciI TCATGA 1 cut(s) 849
CfoI GCGC 2 cut(s) 105, 802
Cfr10I RCCGGY 1 cut(s) 276
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 463
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 6 cut(s) 510, 552, 850, 1015, 1057, 1087
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 4 cut(s) 156, 417, 731, 915
DpnI GATC 5 cut(s) 44, 120, 273, 488, 886
DpnII GATC 5 cut(s) 42, 118, 271, 486, 884
DrdI GACNNNNNNGTC 1 cut(s) 845
DseDI GACNNNNNNGTC 1 cut(s) 845
Eam1104I CTCTTC 5 cut(s) 21, 720, 996, 1038, 1095
EarI CTCTTC 5 cut(s) 21, 720, 996, 1038, 1095
Eco130I CCWWGG 1 cut(s) 992
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 750, 875
EcoT14I CCWWGG 1 cut(s) 992
ErhI CCWWGG 1 cut(s) 992
FaeI CATG 6 cut(s) 513, 555, 853, 1018, 1060, 1090
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 2 cut(s) 248, 938
FatI CATG 6 cut(s) 509, 551, 849, 1014, 1056, 1086
Fnu4HI GCNGC 3 cut(s) 9, 12, 671
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 9, 12, 671
FspBI CTAG 6 cut(s) 51, 242, 675, 708, 882, 966
GlaI GCGC 2 cut(s) 104, 801
GluI GCNGC 3 cut(s) 9, 12, 671
GsaI CCCAGC 1 cut(s) 402
HaeIII GGCC 1 cut(s) 824
HapII CCGG 3 cut(s) 277, 687, 906
HgaI GACGC 1 cut(s) 76
HhaI GCGC 2 cut(s) 105, 802
Hin1II CATG 6 cut(s) 513, 555, 853, 1018, 1060, 1090
Hin6I GCGC 2 cut(s) 103, 800
HinP1I GCGC 2 cut(s) 103, 800
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 7 cut(s) 211, 236, 381, 506, 872, 901, 1105
HpaII CCGG 3 cut(s) 277, 687, 906
HphI GGTGA 2 cut(s) 266, 581
Hpy166II GTNNAC 2 cut(s) 95, 375
Hpy188I TCNGA 6 cut(s) 118, 230, 251, 258, 420, 1054
Hpy188III TCNNGA 4 cut(s) 46, 596, 793, 850
Hpy8I GTNNAC 2 cut(s) 95, 375
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 5 cut(s) 277, 346, 640, 764, 790
HpyCH4III ACNGT 3 cut(s) 99, 740, 869
HpyCH4V TGCA 8 cut(s) 14, 40, 81, 139, 303, 343, 971, 1079
HpyF3I CTNAG 4 cut(s) 156, 417, 731, 915
Hsp92II CATG 6 cut(s) 513, 555, 853, 1018, 1060, 1090
HspAI GCGC 2 cut(s) 103, 800
Kzo9I GATC 5 cut(s) 42, 118, 271, 486, 884
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 2 cut(s) 157, 302
Lsp1109I GCAGC 2 cut(s) 20, 657
LweI GCATC 6 cut(s) 68, 74, 169, 326, 549, 1066
MaeI CTAG 6 cut(s) 51, 242, 675, 708, 882, 966
MaeIII GTNAC 1 cut(s) 46
MalI GATC 5 cut(s) 44, 120, 273, 488, 886
MbiI CCGCTC 1 cut(s) 919
MboI GATC 5 cut(s) 42, 118, 271, 486, 884
MboII GAAGA 9 cut(s) 38, 169, 481, 707, 1010, 1013, 1052, 1055, 1112
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 154, 715
MluCI AATT 7 cut(s) 125, 134, 205, 392, 834, 948, 1023
MlyI GAGTC 2 cut(s) 220, 1114
MmeI TCCRAC 1 cut(s) 1077
MnlI CCTC 6 cut(s) 398, 540, 565, 643, 915, 972
MseI TTAA 3 cut(s) 387, 702, 1117
MslI CAYNNNNRTG 1 cut(s) 1061
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 3 cut(s) 277, 687, 906
MspR9I CCNGG 3 cut(s) 752, 877, 906
MvaI CCWGG 2 cut(s) 752, 877
MvnI CGCG 1 cut(s) 802
NciI CCSGG 1 cut(s) 906
NdeII GATC 5 cut(s) 42, 118, 271, 486, 884
NlaIII CATG 6 cut(s) 513, 555, 853, 1018, 1060, 1090
NlaIV GGNNCC 3 cut(s) 298, 368, 618
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 2 cut(s) 1018, 1060
PagI TCATGA 1 cut(s) 849
PciI ACATGT 2 cut(s) 1014, 1056
PciSI GCTCTTC 1 cut(s) 720
PfeI GAWTC 5 cut(s) 236, 381, 506, 872, 901
PfoI TCCNGGA 1 cut(s) 875
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 3 cut(s) 10, 13, 672
PleI GAGTC 2 cut(s) 219, 1113
PpsI GAGTC 2 cut(s) 219, 1113
PscI ACATGT 2 cut(s) 1014, 1056
Psp6I CCWGG 2 cut(s) 750, 875
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 750, 875
PspN4I GGNNCC 3 cut(s) 298, 368, 618
PsuI RGATCY 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 1061
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 387, 702, 1117
SatI GCNGC 3 cut(s) 9, 12, 671
Sau3AI GATC 5 cut(s) 42, 118, 271, 486, 884
SchI GAGTC 2 cut(s) 220, 1114
ScrFI CCNGG 3 cut(s) 752, 877, 906
SduI GDGCHC 2 cut(s) 154, 715
SetI ASST 9 cut(s) 13, 61, 195, 409, 472, 618, 672, 967, 1011
SfaNI GCATC 6 cut(s) 68, 74, 169, 326, 549, 1066
SgrAI CRCCGGYG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 1061
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 7 cut(s) 125, 134, 205, 392, 834, 948, 1023
SsiI CCGC 6 cut(s) 181, 517, 538, 684, 802, 919
SspI AATATT 1 cut(s) 18
SspMI CTAG 6 cut(s) 51, 242, 675, 708, 882, 966
StyD4I CCNGG 3 cut(s) 750, 875, 904
StyI CCWWGG 1 cut(s) 992
TaaI ACNGT 3 cut(s) 99, 740, 869
TaqI TCGA 2 cut(s) 270, 636
TasI AATT 7 cut(s) 125, 134, 205, 392, 834, 948, 1023
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 5 cut(s) 236, 381, 506, 872, 901
Tru1I TTAA 3 cut(s) 387, 702, 1117
Tru9I TTAA 3 cut(s) 387, 702, 1117
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 8, 11, 670
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 680, 846, 1016, 1053, 1113
TspRI CASTG 1 cut(s) 874
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 205
XceI RCATGY 2 cut(s) 1018, 1060
XspI CTAG 6 cut(s) 51, 242, 675, 708, 882, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.