Rorug01G0465400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001674
Physical Location & Seq
Forward (+)
55796970 .. 55799794
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0465400.1

Sequence Viewer

Length: 1089 bp
ATGAATACTCTCAGAGCCATCATCTTCTCCTTCCTTCTCTTCTCTTCATTCTCATGCCTTACAACGAGTAGTACCTTAGAGACTTGCAAAAACGCTGTTTGCCAAACCGGCGAGGCCGTAATCCGTTTCCCGTTTCGGATCGACAAACGCCAGCCGGAGACTTGTGGCTTCCCCGGTTTTGATCTGACCTGTGACATCACATCCCAAACACTGCTCAATCTTCCTTCTTCGGGAGATTTCACCGTTCAGGGCATAGACTACGGCGAGCAAGAGATATGGATCAACGATCCAAACACCTGCCTCCCCAAACGGCTCCTCTCTCTGAACCTCACCGGCTCTCCGTTTCGGGCTGGGTTTAGTGAAGACTTCACGTTCTTTAACTGCTCCTTGGACTACTTGAAGTACAAGCTAAACCCTATTGCTTGCATGAGTGGTTCCAACTACACGGTTTTCGCCACCAATTCTGCGAGGGTGATTAGGTCCTTGTCGACGACGTGCAGTAAGATTGGAACGTTTTCTGTTCCGGTCGAGTGGACGTTTCACCAGGAGGTTATGTCGTCGGATCTCGACGATCATCTCCGGCTAAAGTGGGACCGACCGGGGTGCGGCGCCTGCGAGTTGCGTGGCGGAAAGTGTGGCTTCAAGACCAATTCTACTAAAGTTGTTTGCTCCAGCCTTAATCAACGAGGAATCCCAAGGGGTGCACGCTATGCTATTACAGTGGGCGTTGGAGTGCCAGCACTTATGTGCCTTATAGGGCTATTATGTTGCATGTGTGGCAGACTCAAGCCTTTAAGAATGAGACGCACATCACTCCCAGAATTTAATTCAATTGTGGCTCCTCAGCCTGGAATCGTAAAGGGACTCGATGTGGCAACACTTGCGGCTTACCCGAAAATAGTCCTCGGTGAAAGCCGGCGTCTACCGCAGCCGGATGAGAGCACTTGTTCGATATGCTTGTCCGAGTACCGGCCGAAGGAGACACTAAAGACCATACCCGAATGCCAACACTGCTTCCATGCTAATTGCATCGATGAATGGCTTAAATTGAATGCTACTTGCCCTATTTGTAGAAAATCTCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

362

Amino Acids

40.08

Weight (kDa)

8.54

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 29 - 96 3.3e-17 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 158 - 224 1.1e-06 Wall-associated receptor kinase C-terminal
zf-rbx1 PF12678 314 - 358 6.5e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 315 - 358 9e-13 Ring finger domain
zf-RING_11 PF17123 316 - 344 1.4e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 316 - 357 1.1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 608
AccI GTMKAC 2 cut(s) 488, 922
AciI CCGC 4 cut(s) 606, 627, 884, 926
AclI AACGTT 1 cut(s) 512
AclWI GGATC 4 cut(s) 146, 281, 287, 570
AcoI YGGCCR 1 cut(s) 971
AcsI RAATTY 1 cut(s) 821
AcyI GRCGYC 2 cut(s) 609, 919
AfaI GTAC 3 cut(s) 73, 404, 968
AfiI CCNNNNNNNGG 5 cut(s) 230, 605, 848, 969, 976
AgsI TTSAA 4 cut(s) 400, 643, 831, 1051
AjiI CACGTC 1 cut(s) 495
AjnI CCWGG 2 cut(s) 543, 847
AleI CACNNNNGTG 1 cut(s) 745
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
Alw21I GWGCWC 2 cut(s) 706, 944
Alw26I GTCTC 4 cut(s) 74, 152, 796, 974
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 4 cut(s) 146, 281, 287, 570
AoxI GGCC 2 cut(s) 114, 971
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 928
ApoI RAATTY 1 cut(s) 821
Asp700I GAANNNNTTC 1 cut(s) 514
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 2 cut(s) 480, 592
AsuC2I CCSGG 2 cut(s) 174, 600
AsuHPI GGTGA 5 cut(s) 232, 322, 484, 533, 920
AvaII GGWCC 2 cut(s) 480, 592
BaeGI GKGCMC 1 cut(s) 706
BanI GGYRCC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 706, 944
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 940
BccI CCATC 1 cut(s) 26
BceAI ACGGC 3 cut(s) 101, 277, 326
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 2 cut(s) 545, 849
BcnI CCSGG 2 cut(s) 174, 600
BcoDI GTCTC 4 cut(s) 74, 152, 796, 974
BfoI RGCGCY 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 3 cut(s) 607, 885, 929
BlsI GCNGC 3 cut(s) 608, 886, 930
Bme1390I CCNGG 4 cut(s) 174, 545, 600, 849
Bme18I GGWCC 2 cut(s) 480, 592
BmgBI CACGTC 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 480, 592
BmiI GGNNCC 5 cut(s) 314, 436, 593, 610, 840
BmrFI CCNGG 4 cut(s) 174, 545, 600, 849
BmsI GCATC 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 655
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 174, 600
Bsa29I ATCGAT 1 cut(s) 1032
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 609, 919
BsaJI CCNNGG 5 cut(s) 172, 387, 599, 695, 904
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 4 cut(s) 322, 352, 539, 569
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 605, 848, 969, 976
Bse118I RCCGGY 4 cut(s) 107, 332, 915, 969
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 545, 849
BseCI ATCGAT 1 cut(s) 1032
BseDI CCNNGG 5 cut(s) 172, 387, 599, 695, 904
BseGI GGATG 2 cut(s) 200, 940
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 5 cut(s) 230, 605, 848, 969, 976
BseMII CTCAG 2 cut(s) 25, 857
BseRI GAGGAG 2 cut(s) 305, 831
BseSI GKGCMC 1 cut(s) 706
BseX3I CGGCCG 1 cut(s) 971
BseXI GCAGC 1 cut(s) 940
BseYI CCCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 517
Bsh1285I CGRYCG 3 cut(s) 528, 599, 974
BshFI GGCC 2 cut(s) 116, 973
BshNI GGYRCC 1 cut(s) 608
BshVI ATCGAT 1 cut(s) 1032
BsiEI CGRYCG 3 cut(s) 528, 599, 974
BsiHKAI GWGCWC 2 cut(s) 706, 944
BslFI GGGAC 2 cut(s) 605, 876
BslI CCNNNNNNNGG 5 cut(s) 230, 605, 848, 969, 976
BsmAI GTCTC 4 cut(s) 74, 152, 796, 974
BsmBI CGTCTC 1 cut(s) 796
BsmFI GGGAC 2 cut(s) 605, 876
BsmI GAATGC 2 cut(s) 1007, 1057
BsnI GGCC 2 cut(s) 116, 973
Bsp1286I GDGCHC 2 cut(s) 706, 944
Bsp143I GATC 6 cut(s) 138, 181, 279, 286, 562, 571
BspACI CCGC 4 cut(s) 606, 627, 884, 926
BspANI GGCC 2 cut(s) 116, 973
BspCNI CTCAG 2 cut(s) 24, 856
BspDI ATCGAT 1 cut(s) 1032
BspLI GGNNCC 5 cut(s) 314, 436, 593, 610, 840
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 146, 281, 287, 570
BspT107I GGYRCC 1 cut(s) 608
BsrFI RCCGGY 4 cut(s) 107, 332, 915, 969
BssAI RCCGGY 4 cut(s) 107, 332, 915, 969
BssECI CCNNGG 5 cut(s) 172, 387, 599, 695, 904
BssMI GATC 6 cut(s) 138, 181, 279, 286, 562, 571
BssNI GRCGYC 2 cut(s) 609, 919
BssT1I CCWWGG 2 cut(s) 387, 695
Bst2UI CCWGG 2 cut(s) 545, 849
Bst4CI ACNGT 3 cut(s) 244, 448, 721
Bst6I CTCTTC 2 cut(s) 44, 49
BstACI GRCGYC 2 cut(s) 609, 919
BstAPI GCANNNNNTGC 2 cut(s) 710, 881
BstC8I GCNNGC 7 cut(s) 152, 266, 424, 613, 706, 738, 917
BstDEI CTNAG 3 cut(s) 11, 76, 843
BstF5I GGATG 2 cut(s) 200, 940
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 6 cut(s) 141, 184, 282, 289, 565, 574
BstMAI GTCTC 4 cut(s) 74, 152, 796, 974
BstMBI GATC 6 cut(s) 138, 181, 279, 286, 562, 571
BstMCI CGRYCG 3 cut(s) 528, 599, 974
BstMWI GCNNNNNNNGC 7 cut(s) 108, 612, 710, 777, 881, 925, 1011
BstNI CCWGG 2 cut(s) 545, 849
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 4 cut(s) 172, 543, 598, 847
BstSLI GKGCMC 1 cut(s) 706
BstV1I GCAGC 1 cut(s) 940
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZI CGGCCG 1 cut(s) 971
Bsu15I ATCGAT 1 cut(s) 1032
BsuRI GGCC 2 cut(s) 116, 973
BsuTUI ATCGAT 1 cut(s) 1032
BtrI CACGTC 1 cut(s) 495
BtsCI GGATG 2 cut(s) 200, 940
BtsI GCAGTG 2 cut(s) 209, 1009
BtsIMutI CAGTG 3 cut(s) 209, 726, 1009
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 7 cut(s) 152, 266, 424, 613, 706, 738, 917
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 4 cut(s) 107, 332, 915, 969
Cfr13I GGNCC 2 cut(s) 480, 592
ClaI ATCGAT 1 cut(s) 1032
CseI GACGC 2 cut(s) 813, 908
Csp6I GTAC 3 cut(s) 72, 403, 967
CviAII CATG 4 cut(s) 54, 427, 772, 1019
CviQI GTAC 3 cut(s) 72, 403, 967
DdeI CTNAG 3 cut(s) 11, 76, 843
DinI GGCGCC 1 cut(s) 610
DpnI GATC 6 cut(s) 140, 183, 281, 288, 564, 573
DpnII GATC 6 cut(s) 138, 181, 279, 286, 562, 571
EaeI YGGCCR 1 cut(s) 971
EagI CGGCCG 1 cut(s) 971
Eam1104I CTCTTC 2 cut(s) 44, 49
EarI CTCTTC 2 cut(s) 44, 49
EciI GGCGGA 1 cut(s) 642
EclXI CGGCCG 1 cut(s) 971
Eco130I CCWWGG 2 cut(s) 387, 695
Eco47I GGWCC 2 cut(s) 480, 592
Eco52I CGGCCG 1 cut(s) 971
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 543, 847
EcoT14I CCWWGG 2 cut(s) 387, 695
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 387, 695
Esp3I CGTCTC 1 cut(s) 796
FaeI CATG 4 cut(s) 57, 430, 775, 1022
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 2 cut(s) 605, 876
FatI CATG 4 cut(s) 53, 426, 771, 1018
FblI GTMKAC 2 cut(s) 488, 922
Fnu4HI GCNGC 3 cut(s) 607, 885, 929
FokI GGATG 2 cut(s) 187, 947
Fsp4HI GCNGC 3 cut(s) 607, 885, 929
GlaI GCGC 1 cut(s) 610
GluI GCNGC 3 cut(s) 607, 885, 929
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 655
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 2 cut(s) 116, 973
HgaI GACGC 2 cut(s) 813, 908
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 2 cut(s) 609, 919
Hin1II CATG 4 cut(s) 57, 430, 775, 1022
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 4 cut(s) 690, 783, 852, 864
HphI GGTGA 5 cut(s) 232, 322, 484, 533, 920
Hpy166II GTNNAC 4 cut(s) 489, 534, 704, 923
Hpy188I TCNGA 6 cut(s) 14, 138, 186, 324, 562, 964
Hpy188III TCNNGA 3 cut(s) 231, 566, 643
Hpy8I GTNNAC 4 cut(s) 489, 534, 704, 923
Hpy99I CGWCG 4 cut(s) 493, 496, 562, 572
HpyAV CCTTC 4 cut(s) 40, 44, 234, 970
HpyCH4III ACNGT 3 cut(s) 244, 448, 721
HpyCH4IV ACGT 4 cut(s) 371, 494, 512, 536
HpyCH4V TGCA 6 cut(s) 87, 426, 498, 704, 771, 1029
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 612, 710, 777, 881, 925, 1011
HpyF3I CTNAG 3 cut(s) 11, 76, 843
HpySE526I ACGT 4 cut(s) 371, 494, 512, 536
Hsp92I GRCGYC 2 cut(s) 609, 919
Hsp92II CATG 4 cut(s) 57, 430, 775, 1022
HspAI GCGC 1 cut(s) 609
KasI GGCGCC 1 cut(s) 608
KroI GCCGGC 1 cut(s) 915
KroNI GCCGGC 1 cut(s) 917
Kzo9I GATC 6 cut(s) 138, 181, 279, 286, 562, 571
LmnI GCTCC 4 cut(s) 318, 389, 674, 844
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 1 cut(s) 1038
MaeII ACGT 4 cut(s) 371, 494, 512, 536
MaeIII GTNAC 1 cut(s) 191
MalI GATC 6 cut(s) 140, 183, 281, 288, 564, 573
MboI GATC 6 cut(s) 138, 181, 279, 286, 562, 571
MboII GAAGA 6 cut(s) 16, 31, 36, 212, 219, 374
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 706, 944
MluCI AATT 7 cut(s) 460, 649, 821, 826, 831, 1024, 1046
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 2 cut(s) 777, 858
MmeI TCCRAC 3 cut(s) 462, 540, 709
MnlI CCTC 9 cut(s) 106, 311, 326, 338, 462, 541, 680, 852, 914
MroNI GCCGGC 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 5 cut(s) 378, 678, 794, 825, 1044
MslI CAYNNNNRTG 2 cut(s) 52, 745
MspR9I CCNGG 4 cut(s) 174, 545, 600, 849
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 2 cut(s) 1007, 1057
MvaI CCWGG 2 cut(s) 545, 849
MwoI GCNNNNNNNGC 7 cut(s) 108, 612, 710, 777, 881, 925, 1011
NaeI GCCGGC 1 cut(s) 917
NarI GGCGCC 1 cut(s) 609
NciI CCSGG 2 cut(s) 174, 600
NdeII GATC 6 cut(s) 138, 181, 279, 286, 562, 571
NgoMIV GCCGGC 1 cut(s) 915
NlaIII CATG 4 cut(s) 57, 430, 775, 1022
NlaIV GGNNCC 5 cut(s) 314, 436, 593, 610, 840
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 305
PctI GAATGC 2 cut(s) 1007, 1057
PdiI GCCGGC 1 cut(s) 917
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 690, 852
PkrI GCNGC 3 cut(s) 608, 886, 930
PleI GAGTC 2 cut(s) 777, 858
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 2 cut(s) 777, 858
PpuMI RGGWCCY 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 543, 847
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 543, 847
PspN4I GGNNCC 5 cut(s) 314, 436, 593, 610, 840
PspPI GGNCC 2 cut(s) 480, 592
PspPPI RGGWCCY 1 cut(s) 480
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 3 cut(s) 73, 404, 968
RsaNI GTAC 3 cut(s) 72, 403, 967
RseI CAYNNNNRTG 2 cut(s) 52, 745
SalI GTCGAC 1 cut(s) 487
SaqAI TTAA 5 cut(s) 378, 678, 794, 825, 1044
SatI GCNGC 3 cut(s) 607, 885, 929
Sau3AI GATC 6 cut(s) 138, 181, 279, 286, 562, 571
Sau96I GGNCC 2 cut(s) 480, 592
SchI GAGTC 2 cut(s) 777, 858
ScrFI CCNGG 4 cut(s) 174, 545, 600, 849
SduI GDGCHC 2 cut(s) 706, 944
SfaNI GCATC 1 cut(s) 1038
SfoI GGCGCC 1 cut(s) 610
SinI GGWCC 2 cut(s) 480, 592
SmiMI CAYNNNNRTG 2 cut(s) 52, 745
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 7 cut(s) 460, 649, 821, 826, 831, 1024, 1046
SsiI CCGC 4 cut(s) 606, 627, 884, 926
SspDI GGCGCC 1 cut(s) 608
StyD4I CCNGG 4 cut(s) 172, 543, 598, 847
StyI CCWWGG 2 cut(s) 387, 695
TaaI ACNGT 3 cut(s) 244, 448, 721
TaiI ACGT 4 cut(s) 374, 497, 515, 539
TaqI TCGA 7 cut(s) 141, 488, 528, 567, 867, 950, 1032
TaqII GACCGA 1 cut(s) 609
TasI AATT 7 cut(s) 460, 649, 821, 826, 831, 1024, 1046
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 609, 887
TfiI GAWTC 2 cut(s) 690, 852
Tru1I TTAA 5 cut(s) 378, 678, 794, 825, 1044
Tru9I TTAA 5 cut(s) 378, 678, 794, 825, 1044
TscAI CASTG 3 cut(s) 216, 726, 1016
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 928
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 17, 36, 1050
TspGWI ACGGA 2 cut(s) 113, 330
TspRI CASTG 3 cut(s) 216, 726, 1016
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 2 cut(s) 480, 592
XapI RAATTY 1 cut(s) 821
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 2 cut(s) 488, 922
XmnI GAANNNNTTC 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.